Experiment set4S421 for Escherichia coli ECRC98

Compare to:

WM_JK32

200 most important genes:

  gene name fitness t score description  
JDDGAC_25875 purC -6.9 -6.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_28540 rfbE -6.4 -2.6 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_19305 rfaB -6.3 -6.8 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
JDDGAC_25435 guaB -6.2 -4.3 IMP dehydrogenase compare
JDDGAC_28575 perB -6.0 -4.5 GDP-perosamine N-acetyltransferase compare
JDDGAC_16935 purH -5.9 -17.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_10355 acrZ -5.7 -1.3 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_25755 purM -5.6 -11.2 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_28560 wbdQ -5.6 -2.3 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
JDDGAC_15900 miaA -5.4 -2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_26675 purF -5.3 -11.4 amidophosphoribosyltransferase compare
JDDGAC_25135 purL -5.2 -20.0 phosphoribosylformylglycinamidine synthase compare
JDDGAC_21580 lptC -5.1 -1.6 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_19185 rpoZ -4.9 -1.1 DNA-directed RNA polymerase subunit omega compare
JDDGAC_15870 purA -4.7 -2.9 adenylosuccinate synthase compare
JDDGAC_25750 purN -4.5 -6.7 phosphoribosylglycinamide formyltransferase compare
JDDGAC_19300 rfaJ -4.3 -4.5 glucosyltransferase compare
JDDGAC_11485 purE -4.0 -4.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_19320 rfaF -3.8 -2.2 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_25440 guaA -3.7 -2.3 glutamine-hydrolyzing GMP synthase compare
JDDGAC_23565 -3.7 -1.2 hypothetical protein compare
JDDGAC_16940 purD -3.7 -6.9 Phosphoribosylamine--glycine ligase compare
JDDGAC_06300 minD -3.4 -1.5 septum site-determining protein MinD compare
JDDGAC_22885 yggS -3.3 -7.5 pyridoxal phosphate homeostasis protein compare
JDDGAC_00825 nudB -3.3 -1.0 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_19310 rfaL -3.3 -6.0 O-antigen ligase RfaL compare
JDDGAC_14795 serB -3.3 -6.2 phosphoserine phosphatase compare
JDDGAC_11390 tnp-ISAs1 -3.1 -1.8 ISAs1 family transposase compare
JDDGAC_03900 espR1 -3.1 -2.7 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_11490 purK -3.0 -10.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_18185 rffG -2.9 -8.6 dTDP-glucose 4,6-dehydratase compare
JDDGAC_06135 lolB -2.9 -1.9 lipoprotein insertase outer membrane protein LolB compare
JDDGAC_06165 ychF -2.8 -2.0 redox-regulated ATPase YchF compare
JDDGAC_00935 yebF -2.8 -1.6 Protein YebF compare
JDDGAC_05985 galU -2.8 -4.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_20740 aroK -2.7 -2.5 shikimate kinase AroK compare
JDDGAC_26635 -2.7 -6.4 Protein DedA compare
JDDGAC_18205 wecA -2.6 -12.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
JDDGAC_28510 -2.6 -7.8 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
JDDGAC_18180 rfbA -2.6 -6.2 glucose-1-phosphate thymidylyltransferase RfbA compare
JDDGAC_09100 serC -2.5 -8.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_11975 -2.5 -3.4 Lon protease compare
JDDGAC_10205 -2.4 -1.6 Putative bacteriophage protein (Gene 65) compare
JDDGAC_17890 rfaH -2.3 -1.6 transcription/translation regulatory transformer protein RfaH compare
JDDGAC_07640 -2.3 -1.5 DNA-binding protein compare
JDDGAC_15525 mgtL -2.2 -1.4 mgtA leader peptide compare
JDDGAC_20700 igaA -2.2 -1.9 intracellular growth attenuator protein IgaA compare
JDDGAC_24045 cysH -2.1 -6.7 phosphoadenosine phosphosulfate reductase compare
JDDGAC_10570 sucC -2.1 -3.5 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_10225 -2.1 -1.2 DUF3927 domain-containing protein compare
JDDGAC_16800 pgi -2.1 -5.7 glucose-6-phosphate isomerase compare
JDDGAC_07825 -2.0 -0.9 Membrane protein compare
JDDGAC_21455 sspA -2.0 -5.9 stringent starvation protein A compare
JDDGAC_30080 flmC -2.0 -1.0 Protein FlmC compare
JDDGAC_27740 -1.9 -1.2 regulator compare
JDDGAC_06890 -1.9 -1.0 HNH endonuclease compare
JDDGAC_06130 hemA -1.9 -2.3 glutamyl-tRNA reductase compare
JDDGAC_06120 prmC -1.9 -1.8 peptide chain release factor N(5)-glutamine methyltransferase compare
JDDGAC_01040 prc -1.9 -6.1 carboxy terminal-processing peptidase compare
JDDGAC_20355 -1.9 -2.3 DUF1778 domain-containing protein compare
JDDGAC_29425 -1.8 -0.9 Prophage protein compare
JDDGAC_29975 sopA -1.8 -3.4 plasmid-partitioning protein SopA compare
JDDGAC_26340 ypdK -1.8 -1.1 membrane protein YpdK compare
JDDGAC_29395 eCs1768 -1.8 -1.7 phage replisome organizer compare
JDDGAC_25955 eutS -1.8 -1.5 Bacterial microcompartment shell protein EutS compare
JDDGAC_01035 proQ -1.7 -4.3 RNA chaperone ProQ compare
JDDGAC_10815 nagA -1.7 -3.3 N-acetylglucosamine-6-phosphate deacetylase compare
JDDGAC_10470 tolR -1.7 -2.2 colicin uptake protein TolR compare
JDDGAC_25690 -1.7 -1.0 acyltransferase compare
JDDGAC_09000 gloC -1.6 -2.0 hydroxyacylglutathione hydrolase GloC compare
JDDGAC_25045 rseA -1.6 -1.8 anti-sigma-E factor RseA compare
JDDGAC_15675 cysQ -1.6 -4.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_21770 nlpI -1.6 -7.2 lipoprotein NlpI compare
JDDGAC_18175 rffC -1.6 -4.7 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
JDDGAC_23100 serA -1.6 -5.1 phosphoglycerate dehydrogenase compare
JDDGAC_05535 -1.6 -1.3 hypothetical protein compare
JDDGAC_06605 icd -1.6 -2.4 NADP-dependent isocitrate dehydrogenase compare
JDDGAC_14440 apaH -1.6 -1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_04170 ydcA -1.6 -2.2 Uncharacterized protein YdcA compare
JDDGAC_06305 minE -1.6 -0.8 cell division topological specificity factor MinE compare
JDDGAC_21310 dusB -1.5 -3.9 tRNA dihydrouridine synthase DusB compare
JDDGAC_19330 yibB -1.5 -3.6 protein YibB compare
JDDGAC_28930 iraM -1.5 -3.7 Anti-adapter protein IraM compare
JDDGAC_24035 cysJ -1.5 -7.2 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_28520 wcaA -1.5 -1.2 glycosyl transferase compare
JDDGAC_27425 yeiL -1.5 -0.8 Regulatory protein YeiL compare
JDDGAC_06530 -1.5 -2.0 lysozyme compare
JDDGAC_09835 rhtA -1.5 -3.2 threonine/homoserine exporter RhtA compare
JDDGAC_08690 dnaC -1.5 -3.4 DNA replication protein DnaC compare
JDDGAC_19355 envC -1.5 -4.2 murein hydrolase activator EnvC compare
JDDGAC_01150 yoaB -1.5 -2.0 RutC family protein YoaB compare
JDDGAC_24800 rnfH -1.5 -3.6 RnfH family protein compare
JDDGAC_15540 treC -1.4 -2.9 alpha,alpha-phosphotrehalase compare
JDDGAC_08845 ompA -1.4 -3.0 outer membrane protein A compare
JDDGAC_20840 -1.4 -1.4 Uncharacterized protein YhfG compare
JDDGAC_28760 kil -1.4 -1.0 Protein kil compare
JDDGAC_06620 mnmA -1.4 -1.5 tRNA 2-thiouridine(34) synthase MnmA compare
JDDGAC_18170 rffA -1.4 -4.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
JDDGAC_24160 rpoS -1.4 -9.6 RNA polymerase sigma factor RpoS compare
JDDGAC_18940 grlR -1.4 -1.6 type III secretion system LEE GrlA-binding negative regulator GrlR compare
JDDGAC_04485 -1.4 -1.2 Holin compare
JDDGAC_05735 -1.3 -4.8 phage tail protein compare
JDDGAC_05250 nleG -1.3 -1.0 T3SS effector E3 ubiquitin-protein ligase NleG compare
JDDGAC_10540 -1.3 -1.3 DUF4387 domain-containing protein compare
JDDGAC_04370 rri1 -1.3 -1.6 phage tail protein compare
JDDGAC_10690 yafF -1.3 -1.0 ISAs1 family transposase compare
JDDGAC_05690 -1.3 -1.8 phage tail protein compare
JDDGAC_26945 arnD -1.3 -2.2 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase compare
JDDGAC_00400 sdiA -1.3 -5.3 transcriptional regulator SdiA compare
JDDGAC_14430 rsmA -1.3 -1.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
JDDGAC_04110 tehB -1.3 -2.8 tellurite resistance methyltransferase TehB compare
JDDGAC_25680 -1.3 -2.8 hypothetical protein compare
JDDGAC_28970 -1.3 -0.9 DNA-binding protein compare
JDDGAC_01065 yebO -1.3 -0.6 Uncharacterized protein YebO compare
JDDGAC_02140 rsxB -1.3 -1.5 electron transport complex subunit RsxB compare
JDDGAC_26670 cvpA -1.2 -1.4 colicin V production protein compare
JDDGAC_24915 rluD -1.2 -4.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
JDDGAC_00840 ruvC -1.2 -2.4 crossover junction endodeoxyribonuclease RuvC compare
JDDGAC_29980 sopA -1.2 -0.7 plasmid-partitioning protein SopA compare
JDDGAC_06430 -1.2 -0.7 phage tail protein compare
JDDGAC_06145 prs -1.2 -1.2 ribose-phosphate diphosphokinase compare
JDDGAC_06645 -1.2 -1.2 hypothetical protein compare
JDDGAC_02485 -1.2 -2.0 DUF977 domain-containing protein compare
JDDGAC_03670 lsrC -1.2 -1.3 autoinducer 2 ABC transporter permease LsrC compare
JDDGAC_06125 prfA -1.2 -1.1 peptide chain release factor 1 compare
JDDGAC_24625 alpA -1.2 -1.6 dipicolinate synthase compare
JDDGAC_05065 rnb -1.2 -2.5 exoribonuclease II compare
JDDGAC_00235 rcsA -1.2 -2.4 transcriptional regulator RcsA compare
JDDGAC_08730 ydfB -1.2 -1.0 Uncharacterized protein YdfB compare
JDDGAC_27665 -1.2 -2.7 DUF551 domain-containing protein compare
JDDGAC_19925 gadE -1.2 -4.5 acid resistance transcriptional activator GadE compare
JDDGAC_01730 ydiT -1.2 -2.3 Ferredoxin-like protein YdiT compare
JDDGAC_26355 -1.2 -1.8 Uncharacterized lipoprotein YpdI compare
JDDGAC_24040 cysI -1.2 -4.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
JDDGAC_01425 nudG -1.2 -1.6 CTP pyrophosphohydrolase compare
JDDGAC_27145 rcsB -1.2 -4.4 transcriptional regulator RcsB compare
JDDGAC_01245 yeaO -1.1 -0.9 Uncharacterized protein YeaO compare
JDDGAC_17795 dsbA -1.1 -3.1 thiol:disulfide interchange protein DsbA compare
JDDGAC_14890 holD -1.1 -0.6 DNA polymerase III subunit psi compare
JDDGAC_06250 umuD -1.1 -1.3 Protein UmuD compare
JDDGAC_28450 wcaF -1.1 -2.8 colanic acid biosynthesis acetyltransferase WcaF compare
JDDGAC_10870 miaB -1.1 -4.9 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
JDDGAC_27790 ylcG -1.1 -1.7 Uncharacterized protein YlcG compare
JDDGAC_00590 -1.1 -1.8 Putative transmembrane protein compare
JDDGAC_11350 cusR -1.1 -1.2 copper response regulator transcription factor CusR compare
JDDGAC_19895 gadW -1.1 -5.2 acid resistance transcriptional activator GadW compare
JDDGAC_28515 galF -1.1 -1.8 UTP--glucose-1-phosphate uridylyltransferase GalF compare
JDDGAC_03630 yneG -1.1 -1.0 Uncharacterized protein YneG compare
JDDGAC_09385 lrp -1.0 -2.4 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_23140 ygfB -1.0 -1.2 UPF0149 family protein YgfB compare
JDDGAC_29110 -1.0 -2.1 host specificity protein J compare
JDDGAC_22870 rdgB -1.0 -1.7 XTP/dITP diphosphatase compare
JDDGAC_27880 -1.0 -0.9 Phage protein compare
JDDGAC_28885 ninG -1.0 -1.2 Protein ninG compare
JDDGAC_03335 -1.0 -0.9 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
JDDGAC_03685 lsrK -1.0 -2.6 autoinducer-2 kinase compare
JDDGAC_24115 cysC -1.0 -5.1 Adenylyl-sulfate kinase compare
JDDGAC_02135 rsxC -1.0 -2.4 electron transport complex subunit RsxC compare
JDDGAC_20225 fadM -1.0 -2.5 4-hydroxybenzoyl-CoA thioesterase compare
JDDGAC_14455 -1.0 -1.8 Dihydrofolate reductase compare
JDDGAC_08700 -1.0 -1.2 hypothetical protein compare
JDDGAC_08570 -1.0 -1.7 hypothetical protein compare
JDDGAC_13180 -1.0 -1.6 lysozyme compare
JDDGAC_07740 terZ -1.0 -2.7 tellurium resistance-associated protein TerZ compare
JDDGAC_02130 rsxD -1.0 -2.2 electron transport complex subunit RsxD compare
JDDGAC_28130 fimA -1.0 -1.9 Uncharacterized fimbrial-like protein YehD compare
JDDGAC_21265 yhdV -1.0 -1.5 Uncharacterized protein YhdV compare
JDDGAC_27270 dsbE -1.0 -1.0 thiol:disulfide interchange protein DsbE compare
JDDGAC_06660 -1.0 -2.2 head decoration protein compare
JDDGAC_08820 helD -1.0 -2.4 DNA helicase IV compare
JDDGAC_15785 ulaB -1.0 -2.0 PTS ascorbate transporter subunit IIB compare
JDDGAC_11365 -1.0 -1.4 Uncharacterized conserved protein compare
JDDGAC_11200 entH -1.0 -2.0 proofreading thioesterase EntH compare
JDDGAC_26825 nuoF -1.0 -2.4 NADH-quinone oxidoreductase subunit NuoF compare
JDDGAC_07900 opgE -1.0 -1.6 phosphoethanolamine transferase compare
JDDGAC_01960 cfa -0.9 -0.9 cyclopropane fatty acyl phospholipid synthase compare
JDDGAC_14610 -0.9 -1.0 hypothetical protein compare
JDDGAC_19215 rph -0.9 -2.5 ribonuclease PH compare
JDDGAC_10885 corC -0.9 -1.3 CNNM family magnesium/cobalt transport protein CorC compare
JDDGAC_10285 -0.9 -0.5 Cell division protein ZapA compare
JDDGAC_00910 zwf -0.9 -1.0 glucose-6-phosphate dehydrogenase compare
JDDGAC_02190 hdhA -0.9 -1.1 7-alpha-hydroxysteroid dehydrogenase compare
JDDGAC_26185 -0.9 -2.1 flxA-like family protein compare
JDDGAC_29175 yeeT -0.9 -0.9 Uncharacterized protein YeeT compare
JDDGAC_13310 crl -0.9 -4.6 sigma factor-binding protein Crl compare
JDDGAC_04255 pdxI -0.9 -2.4 pyridoxine 4-dehydrogenase compare
JDDGAC_17910 tatA -0.9 -0.6 Sec-independent protein translocase subunit TatA compare
JDDGAC_12495 cynR -0.9 -1.5 transcriptional regulator CynR compare
JDDGAC_16970 hupA -0.9 -2.5 DNA-binding protein HU-alpha compare
JDDGAC_04850 tyrR -0.9 -0.7 transcriptional regulator TyrR compare
JDDGAC_01340 rbsK -0.9 -2.5 sugar kinase compare
JDDGAC_18020 corA -0.9 -2.3 magnesium/cobalt transporter CorA compare
JDDGAC_03760 yddA -0.9 -2.0 Inner membrane ABC transporter ATP-binding protein YddA compare
JDDGAC_25415 bamB -0.9 -2.7 outer membrane protein assembly factor BamB compare
JDDGAC_26060 yfeZ -0.9 -1.4 Inner membrane protein YfeZ compare
JDDGAC_12565 yahO -0.9 -2.6 DUF1471 domain-containing protein compare
JDDGAC_07760 -0.9 -2.6 Phosphoribosyl transferase (PRTase) compare
JDDGAC_26035 eutK -0.9 -2.0 ethanolamine utilization microcompartment protein EutK compare
JDDGAC_20500 yhgN -0.9 -2.7 NAAT family transporter YhgN compare
JDDGAC_08935 -0.9 -2.6 PapC-N domain-containing protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms