Experiment set4S410 for Escherichia coli ECRC98

Compare to:

WM_JK42

200 most important genes:

  gene name fitness t score description  
JDDGAC_25755 purM -6.8 -11.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_28590 wzzB -6.5 -16.3 LPS O-antigen chain length determinant protein WzzB compare
JDDGAC_28575 perB -6.5 -4.2 GDP-perosamine N-acetyltransferase compare
JDDGAC_17890 rfaH -6.4 -3.3 transcription/translation regulatory transformer protein RfaH compare
JDDGAC_19290 waaO -6.2 -4.3 lipopolysaccharide 3-alpha-galactosyltransferase compare
JDDGAC_28510 -5.9 -14.0 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
JDDGAC_28525 wzy -5.9 -3.0 O157 family O-antigen polymerase compare
JDDGAC_28540 rfbE -5.7 -2.6 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_18205 wecA -5.6 -18.6 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
JDDGAC_25875 purC -5.5 -6.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_27740 -5.5 -1.5 regulator compare
JDDGAC_19310 rfaL -5.5 -6.4 O-antigen ligase RfaL compare
JDDGAC_25750 purN -5.4 -9.6 phosphoribosylglycinamide formyltransferase compare
JDDGAC_10355 acrZ -5.3 -1.4 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_16935 purH -5.3 -13.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_28970 -5.2 -1.4 DNA-binding protein compare
JDDGAC_19300 rfaJ -5.2 -5.4 glucosyltransferase compare
JDDGAC_25135 purL -5.2 -18.5 phosphoribosylformylglycinamidine synthase compare
JDDGAC_11485 purE -5.1 -5.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_11490 purK -5.0 -7.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_28560 wbdQ -4.9 -2.3 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
JDDGAC_25415 bamB -4.9 -7.5 outer membrane protein assembly factor BamB compare
JDDGAC_26675 purF -4.9 -12.0 amidophosphoribosyltransferase compare
JDDGAC_16940 purD -4.8 -10.9 Phosphoribosylamine--glycine ligase compare
JDDGAC_25435 guaB -4.8 -7.4 IMP dehydrogenase compare
JDDGAC_15900 miaA -4.8 -2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_21580 lptC -4.7 -1.6 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_18215 trxA -4.6 -2.5 thioredoxin TrxA compare
JDDGAC_28520 wcaA -4.6 -1.8 glycosyl transferase compare
JDDGAC_23140 ygfB -4.4 -2.8 UPF0149 family protein YgfB compare
JDDGAC_14075 acnB -4.4 -2.6 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
JDDGAC_01065 yebO -4.3 -1.1 Uncharacterized protein YebO compare
JDDGAC_14890 holD -4.2 -1.1 DNA polymerase III subunit psi compare
JDDGAC_15870 purA -4.1 -2.8 adenylosuccinate synthase compare
JDDGAC_19305 rfaB -4.1 -6.7 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
JDDGAC_16625 -3.9 -1.5 phage tail protein compare
JDDGAC_19285 rfaP -3.9 -2.7 lipopolysaccharide core heptose(I) kinase RfaP compare
JDDGAC_21455 sspA -3.8 -8.0 stringent starvation protein A compare
JDDGAC_05550 -3.8 -2.9 Uncharacterized protein gp11 compare
JDDGAC_18185 rffG -3.8 -9.4 dTDP-glucose 4,6-dehydratase compare
JDDGAC_05250 nleG -3.6 -1.4 T3SS effector E3 ubiquitin-protein ligase NleG compare
JDDGAC_20740 aroK -3.6 -3.4 shikimate kinase AroK compare
JDDGAC_29975 sopA -3.6 -4.2 plasmid-partitioning protein SopA compare
JDDGAC_25690 -3.5 -2.2 acyltransferase compare
JDDGAC_06755 -3.3 -1.2 hypothetical protein compare
JDDGAC_18405 mnmG -3.2 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_19320 rfaF -3.2 -2.1 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_14435 apaG -3.2 -2.2 Co2+/Mg2+ efflux protein ApaG compare
JDDGAC_05985 galU -3.1 -3.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_25440 guaA -3.1 -2.1 glutamine-hydrolyzing GMP synthase compare
JDDGAC_19280 rfaG -3.1 -5.4 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_23100 serA -3.1 -8.6 phosphoglycerate dehydrogenase compare
JDDGAC_26670 cvpA -3.0 -3.6 colicin V production protein compare
JDDGAC_29305 ycdB -3.0 -1.9 putative transcriptional regulatory protein YcdB compare
JDDGAC_00825 nudB -3.0 -1.1 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_03840 bdm -2.9 -1.5 biofilm-dependent modulation protein compare
JDDGAC_17905 tatB -2.8 -1.8 Sec-independent protein translocase protein TatB compare
JDDGAC_16800 pgi -2.8 -8.8 glucose-6-phosphate isomerase compare
JDDGAC_22885 yggS -2.8 -5.2 pyridoxal phosphate homeostasis protein compare
JDDGAC_28935 -2.8 -2.6 sialate O-acetylesterase compare
JDDGAC_09100 serC -2.8 -6.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_02170 add -2.7 -1.8 adenosine deaminase compare
JDDGAC_14795 serB -2.7 -3.4 phosphoserine phosphatase compare
JDDGAC_09385 lrp -2.7 -4.3 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_10455 pal -2.6 -2.6 peptidoglycan-associated lipoprotein Pal compare
JDDGAC_06305 minE -2.6 -1.0 cell division topological specificity factor MinE compare
JDDGAC_09290 oRF81 -2.5 -0.9 Uncharacterized protein in GpA 5'region compare
JDDGAC_18180 rfbA -2.5 -4.1 glucose-1-phosphate thymidylyltransferase RfbA compare
JDDGAC_11805 recR -2.5 -2.5 recombination mediator RecR compare
JDDGAC_27270 dsbE -2.4 -1.5 thiol:disulfide interchange protein DsbE compare
JDDGAC_10465 tolA -2.4 -2.3 cell envelope integrity protein TolA compare
JDDGAC_04080 hicA -2.3 -1.2 type II toxin-antitoxin system mRNA interferase toxin HicA compare
JDDGAC_13120 -2.3 -1.1 DUF2635 domain-containing protein compare
JDDGAC_23425 fliN -2.2 -0.8 YscQ/HrcQ family type III secretion apparatus protein compare
JDDGAC_28760 kil -2.2 -1.3 Protein kil compare
JDDGAC_27065 yfaE -2.2 -1.0 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
JDDGAC_04270 ydbL -2.2 -1.0 DUF1318 domain-containing protein compare
JDDGAC_01535 chbB -2.2 -2.0 PTS N,N'-diacetylchitobiose transporter subunit IIB compare
JDDGAC_26485 Arg_trna -2.1 -2.2 tRNA-Arg(cct) compare
JDDGAC_02120 rsxE -2.1 -2.6 electron transport complex subunit RsxE compare
JDDGAC_07145 comR -2.1 -2.3 TetR family copper-responsive transcriptional repressor ComR compare
JDDGAC_13250 -2.1 -1.5 XRE family transcriptional regulator compare
JDDGAC_04850 tyrR -2.1 -1.5 transcriptional regulator TyrR compare
JDDGAC_06715 -2.1 -2.4 hypothetical protein compare
JDDGAC_18020 corA -2.1 -3.6 magnesium/cobalt transporter CorA compare
JDDGAC_18760 tisB -2.1 -0.9 Small toxic protein TisB compare
JDDGAC_06620 mnmA -2.0 -1.3 tRNA 2-thiouridine(34) synthase MnmA compare
JDDGAC_26340 ypdK -2.0 -1.1 membrane protein YpdK compare
JDDGAC_08095 -2.0 -1.2 hypothetical protein compare
JDDGAC_14440 apaH -2.0 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_10470 tolR -2.0 -2.6 colicin uptake protein TolR compare
JDDGAC_08190 efeU -2.0 -1.3 Ferrous iron permease EfeU compare
JDDGAC_14430 rsmA -2.0 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
JDDGAC_28255 glpR -2.0 -2.3 transcriptional regulator compare
JDDGAC_24035 cysJ -1.9 -8.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_20355 -1.9 -2.6 DUF1778 domain-containing protein compare
JDDGAC_21490 nanK -1.9 -2.5 N-acetylmannosamine kinase compare
JDDGAC_02140 rsxB -1.9 -1.6 electron transport complex subunit RsxB compare
JDDGAC_02410 dnaQ -1.8 -1.1 exonuclease compare
JDDGAC_27410 psuK -1.8 -1.1 pseudouridine kinase compare
JDDGAC_16385 ytcA -1.8 -0.8 Uncharacterized protein YtcA compare
JDDGAC_29105 -1.7 -1.1 tail assembly protein compare
JDDGAC_04485 -1.7 -1.2 Holin compare
JDDGAC_22870 rdgB -1.7 -1.7 XTP/dITP diphosphatase compare
JDDGAC_06045 -1.7 -1.4 hypothetical protein compare
JDDGAC_15675 cysQ -1.7 -3.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_26765 yfbV -1.7 -0.8 UPF0208 membrane protein YfbV compare
JDDGAC_24045 cysH -1.7 -3.7 phosphoadenosine phosphosulfate reductase compare
JDDGAC_29355 -1.7 -2.2 DUF4224 domain-containing protein compare
JDDGAC_25980 eutM -1.7 -1.4 ethanolamine utilization microcompartment protein EutM compare
JDDGAC_10045 ybhB -1.7 -2.3 kinase inhibitor compare
JDDGAC_13010 -1.7 -1.2 Phage-associated protein compare
JDDGAC_22545 ftsP -1.6 -1.8 cell division protein FtsP compare
JDDGAC_10815 nagA -1.6 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
JDDGAC_10475 tolQ -1.6 -1.9 Tol-Pal system protein TolQ compare
JDDGAC_23195 sdhE -1.6 -1.6 FAD assembly factor SdhE compare
JDDGAC_27730 -1.6 -1.9 SIR2-like domain-containing protein compare
JDDGAC_11975 -1.6 -2.6 Lon protease compare
JDDGAC_05745 spoIVCA -1.6 -1.8 Hin recombinase compare
JDDGAC_00770 cutC -1.6 -1.5 copper homeostasis protein CutC compare
JDDGAC_28180 thiM -1.6 -2.1 hydroxyethylthiazole kinase compare
JDDGAC_28675 sbcB -1.6 -3.5 exodeoxyribonuclease I compare
JDDGAC_00230 dsrB -1.6 -0.7 protein DsrB compare
JDDGAC_03645 tam -1.6 -1.4 trans-aconitate 2-methyltransferase compare
JDDGAC_00305 fliE -1.6 -2.5 flagellar hook-basal body complex protein FliE compare
JDDGAC_25045 rseA -1.5 -2.7 anti-sigma-E factor RseA compare
JDDGAC_17455 pfkA -1.5 -2.1 6-phosphofructokinase compare
JDDGAC_27665 -1.5 -2.3 DUF551 domain-containing protein compare
JDDGAC_06605 icd -1.5 -1.6 NADP-dependent isocitrate dehydrogenase compare
JDDGAC_26635 -1.5 -4.2 Protein DedA compare
JDDGAC_09815 mntS -1.5 -1.3 manganase accumulation protein MntS compare
JDDGAC_11265 fes -1.5 -2.0 enterobactin/ferric enterobactin esterase compare
JDDGAC_07740 terZ -1.5 -2.9 tellurium resistance-associated protein TerZ compare
JDDGAC_09920 espX2 -1.5 -0.9 type III secretion system effector EspX2 compare
JDDGAC_29980 sopA -1.5 -0.8 plasmid-partitioning protein SopA compare
JDDGAC_14420 surA -1.5 -3.2 peptidylprolyl isomerase SurA compare
JDDGAC_13950 pcnB -1.4 -2.7 polynucleotide adenylyltransferase PcnB compare
JDDGAC_03670 lsrC -1.4 -1.6 autoinducer 2 ABC transporter permease LsrC compare
JDDGAC_22955 tkt -1.4 -1.7 transketolase compare
JDDGAC_04780 ogt -1.4 -0.9 methylated-DNA--[protein]-cysteine S-methyltransferase compare
JDDGAC_18600 -1.4 -1.1 hypothetical protein compare
JDDGAC_08650 -1.4 -3.1 antitermination protein compare
JDDGAC_01585 ybcI -1.4 -1.2 metal-dependent hydrolase compare
JDDGAC_02335 bioD -1.4 -1.6 dethiobiotin synthase compare
JDDGAC_08160 pgaC -1.4 -2.5 poly-beta-1,6-N-acetyl-D-glucosamine synthase compare
JDDGAC_02040 ydhF -1.4 -0.9 Oxidoreductase YdhF compare
JDDGAC_03730 ydeQ -1.4 -0.7 Uncharacterized fimbrial-like protein YdeQ compare
JDDGAC_23565 -1.4 -0.8 hypothetical protein compare
JDDGAC_23480 -1.4 -0.9 type III secretion apparatus protein OrgA/MxiK compare
JDDGAC_29130 -1.4 -1.4 secretion protein EspS compare
JDDGAC_03795 dosP -1.4 -1.3 oxygen-sensing cyclic-di-GMP phosphodiesterase compare
JDDGAC_08995 aspC -1.3 -1.9 aspartate transaminase compare
JDDGAC_06125 prfA -1.3 -1.1 peptide chain release factor 1 compare
JDDGAC_08445 lomR -1.3 -0.8 Ail/Lom family protein compare
JDDGAC_06650 -1.3 -1.4 terminase compare
JDDGAC_10460 tolB -1.3 -3.8 Tol-Pal system protein TolB compare
JDDGAC_29920 -1.3 -1.4 hypothetical protein compare
JDDGAC_13940 dksA -1.3 -3.6 RNA polymerase-binding protein DksA compare
JDDGAC_00440 insI1 -1.3 -1.7 IS30 family transposase compare
JDDGAC_20700 igaA -1.3 -1.3 intracellular growth attenuator protein IgaA compare
JDDGAC_10695 -1.3 -0.9 Uncharacterized protein YbfC compare
JDDGAC_29430 -1.3 -1.6 DUF551 domain-containing protein compare
JDDGAC_18785 -1.3 -0.9 hypothetical protein compare
JDDGAC_19100 -1.2 -0.7 Aec79 compare
JDDGAC_24115 cysC -1.2 -4.9 Adenylyl-sulfate kinase compare
JDDGAC_05165 yciK -1.2 -1.4 YciK family oxidoreductase compare
JDDGAC_03900 espR1 -1.2 -1.7 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_10810 nagB -1.2 -2.9 glucosamine-6-phosphate deaminase compare
JDDGAC_05720 gp46 -1.2 -2.2 Phage GP46 family protein compare
JDDGAC_04325 -1.2 -1.0 peptidase M85 compare
JDDGAC_18170 rffA -1.2 -2.7 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
JDDGAC_01035 proQ -1.2 -3.2 RNA chaperone ProQ compare
JDDGAC_12090 pgpA -1.2 -0.9 phosphatidylglycerophosphatase A compare
JDDGAC_03180 -1.2 -1.3 replication protein compare
JDDGAC_06295 minC -1.2 -1.4 septum site-determining protein MinC compare
JDDGAC_01475 xthA -1.2 -1.0 exodeoxyribonuclease III compare
JDDGAC_01870 fumD -1.2 -1.1 fumarate hydratase FumD compare
JDDGAC_01040 prc -1.2 -4.5 carboxy terminal-processing peptidase compare
JDDGAC_09435 cspD -1.2 -1.2 cold shock-like protein CspD compare
JDDGAC_15135 idlP -1.2 -1.9 iraD leader peptide compare
JDDGAC_06310 -1.2 -1.2 autotransporter outer membrane beta-barrel domain-containing protein compare
JDDGAC_25410 yfgM -1.2 -1.0 ancillary SecYEG translocon subunit YfgM compare
JDDGAC_15540 treC -1.2 -3.0 alpha,alpha-phosphotrehalase compare
JDDGAC_06670 -1.2 -1.3 hypothetical protein compare
JDDGAC_19275 rfaQ -1.2 -3.3 lipopolysaccharide core heptosyltransferase RfaQ compare
JDDGAC_20745 aroB -1.2 -2.0 3-dehydroquinate synthase compare
JDDGAC_16765 psiE -1.2 -2.4 phosphate-starvation-inducible protein PsiE compare
JDDGAC_06140 ispE -1.2 -1.0 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_02130 rsxD -1.2 -3.5 electron transport complex subunit RsxD compare
JDDGAC_06130 hemA -1.2 -3.5 glutamyl-tRNA reductase compare
JDDGAC_05790 hokD1 -1.1 -0.8 Protein HokD compare
JDDGAC_26945 arnD -1.1 -2.0 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase compare
JDDGAC_18175 rffC -1.1 -1.8 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
JDDGAC_26865 nuoN -1.1 -2.5 NADH-quinone oxidoreductase subunit NuoN compare
JDDGAC_08250 rutF -1.1 -1.9 malonic semialdehyde reductase compare
JDDGAC_06700 -1.1 -1.2 DUF4222 domain-containing protein compare
JDDGAC_16610 -1.1 -2.2 phage tail protein compare
JDDGAC_02475 dnaC -1.1 -1.3 DNA replication protein DnaC compare
JDDGAC_25845 hyfA -1.1 -1.2 hydrogenase 4 subunit HyfA compare
JDDGAC_13335 ykfJ -1.1 -1.7 Putative uncharacterized protein YkfJ compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms