Experiment set4S409 for Bacteroides ovatus ATCC 8483

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse11; day4

Group: mouse
Media: + diet=StandardDiet; sample=FecalPellet; inoculation=Mono
Culturing: Bovatus_ATCC8483_ML6
By: Saria on 5/20/25

Specific Phenotypes

For 5 genes in this experiment

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono in Bacteroides ovatus ATCC 8483

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms

SEED Subsystems

Subsystem	#Specific
DNA-binding regulatory proteins, strays	1
Entner-Doudoroff Pathway	1
Glycolysis and Gluconeogenesis	1
Glycolysis and Gluconeogenesis, including Archaeal enzymes	1
Oxidative stress	1
Serine-glyoxylate cycle	1
Thioredoxin-disulfide reductase	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycolysis / Gluconeogenesis
• Biosynthesis of phenylpropanoids
• Biosynthesis of terpenoids and steroids
• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Biosynthesis of alkaloids derived from histidine and purine
• Biosynthesis of alkaloids derived from terpenoid and polyketide
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
gallate biosynthesis	3	2	1
quinate degradation I	3	1	1
quinate degradation II	3	1	1
chorismate biosynthesis from 3-dehydroquinate	5	5	1
chorismate biosynthesis I	7	7	1
Entner-Doudoroff pathway I	9	8	1
Entner-Doudoroff pathway III (semi-phosphorylative)	9	6	1
Entner-Doudoroff pathway II (non-phosphorylative)	9	5	1
superpathway of L-phenylalanine biosynthesis	10	10	1
superpathway of L-tyrosine biosynthesis	10	10	1
glycolysis IV	10	9	1
Rubisco shunt	10	8	1
glycolysis V (Pyrococcus)	10	6	1
glycolysis III (from glucose)	11	11	1
glycolysis II (from fructose 6-phosphate)	11	10	1
glycolysis VI (from fructose)	11	8	1
homolactic fermentation	12	11	1
gluconeogenesis III	12	10	1
chorismate biosynthesis II (archaea)	12	8	1
superpathway of L-tryptophan biosynthesis	13	13	1
gluconeogenesis I	13	11	1
glycolysis I (from glucose 6-phosphate)	13	11	1
formaldehyde assimilation I (serine pathway)	13	8	1
Bifidobacterium shunt	15	12	1
glycerol degradation to butanol	16	8	1
superpathway of glucose and xylose degradation	17	16	1
superpathway of glycolysis and the Entner-Doudoroff pathway	17	14	1
superpathway of aromatic amino acid biosynthesis	18	18	1
heterolactic fermentation	18	14	1
superpathway of hexitol degradation (bacteria)	18	13	1
gluconeogenesis II (Methanobacterium thermoautotrophicum)	18	8	1
superpathway of anaerobic sucrose degradation	19	14	1
hexitol fermentation to lactate, formate, ethanol and acetate	19	14	1
superpathway of N-acetylneuraminate degradation	22	17	1
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle	22	17	1
ethene biosynthesis V (engineered)	25	15	1
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass	26	18	1
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)	26	12	1
1-butanol autotrophic biosynthesis (engineered)	27	13	1
superpathway of aromatic compound degradation via 3-oxoadipate	35	1	1
superpathway of aromatic compound degradation via 2-hydroxypentadienoate	42	2	1
Methanobacterium thermoautotrophicum biosynthetic metabolism	56	21	1
superpathway of chorismate metabolism	59	38	1