Experiment set4S400 for Escherichia coli ECRC98

Compare to:

WM_TP11

200 most important genes:

  gene name fitness t score description  
JDDGAC_11485 purE -6.1 -4.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_26675 purF -5.8 -7.9 amidophosphoribosyltransferase compare
JDDGAC_25875 purC -5.6 -6.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_16935 purH -5.6 -17.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_16940 purD -5.2 -12.4 Phosphoribosylamine--glycine ligase compare
JDDGAC_24630 xerD -5.1 -2.4 site-specific integrase compare
JDDGAC_25135 purL -5.1 -19.4 phosphoribosylformylglycinamidine synthase compare
JDDGAC_28540 rfbE -4.9 -2.3 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_10355 acrZ -4.8 -1.3 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_25435 guaB -4.8 -3.3 IMP dehydrogenase compare
JDDGAC_19310 rfaL -4.6 -6.1 O-antigen ligase RfaL compare
JDDGAC_21580 lptC -4.5 -1.6 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_25755 purM -4.4 -10.2 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_08445 lomR -4.4 -1.2 Ail/Lom family protein compare
JDDGAC_15900 miaA -4.4 -2.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_08295 cbpM -4.4 -1.2 chaperone modulator CbpM compare
JDDGAC_26745 yfcD -4.1 -2.0 NUDIX hydrolase YfcD compare
JDDGAC_28560 wbdQ -4.1 -1.9 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
JDDGAC_28520 wcaA -4.1 -1.6 glycosyl transferase compare
JDDGAC_25690 -3.9 -2.2 acyltransferase compare
JDDGAC_25045 rseA -3.8 -3.8 anti-sigma-E factor RseA compare
JDDGAC_06555 ybcO -3.8 -1.0 Putative nuclease YbcO compare
JDDGAC_28955 rrrD -3.8 -2.3 lysozyme RrrD compare
JDDGAC_25750 purN -3.7 -6.3 phosphoribosylglycinamide formyltransferase compare
JDDGAC_14420 surA -3.7 -4.4 peptidylprolyl isomerase SurA compare
JDDGAC_00230 dsrB -3.7 -1.0 protein DsrB compare
JDDGAC_15870 purA -3.7 -2.5 adenylosuccinate synthase compare
JDDGAC_28510 -3.6 -9.6 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
JDDGAC_22885 yggS -3.5 -7.6 pyridoxal phosphate homeostasis protein compare
JDDGAC_06785 nleL -3.5 -1.3 type III secretion system effector E3 ubiquitin ligase NleL compare
JDDGAC_27785 rusA -3.4 -0.9 crossover junction endodeoxyribonuclease RusA compare
JDDGAC_00770 cutC -3.3 -2.0 copper homeostasis protein CutC compare
JDDGAC_01040 prc -3.3 -7.8 carboxy terminal-processing peptidase compare
JDDGAC_11035 lipB -3.2 -1.3 lipoyl(octanoyl) transferase LipB compare
JDDGAC_04485 -3.2 -1.3 Holin compare
JDDGAC_08730 ydfB -3.2 -1.1 Uncharacterized protein YdfB compare
JDDGAC_11225 fepB -2.9 -5.5 ferrienterobactin ABC transporter periplasmic binding protein compare
JDDGAC_06620 mnmA -2.9 -1.7 tRNA 2-thiouridine(34) synthase MnmA compare
JDDGAC_18405 mnmG -2.9 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_06515 -2.9 -1.1 DUF1398 domain-containing protein compare
JDDGAC_23140 ygfB -2.9 -2.5 UPF0149 family protein YgfB compare
JDDGAC_18205 wecA -2.9 -11.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
JDDGAC_26340 ypdK -2.9 -1.1 membrane protein YpdK compare
JDDGAC_05535 -2.8 -1.0 hypothetical protein compare
JDDGAC_11390 tnp-ISAs1 -2.8 -1.4 ISAs1 family transposase compare
JDDGAC_30200 putA1 -2.8 -2.6 CopG family transcriptional regulator compare
JDDGAC_02060 ydhI -2.7 -1.1 Uncharacterized protein YdhI compare
JDDGAC_14795 serB -2.7 -3.8 phosphoserine phosphatase compare
JDDGAC_28575 perB -2.7 -3.0 GDP-perosamine N-acetyltransferase compare
JDDGAC_01535 chbB -2.7 -1.9 PTS N,N'-diacetylchitobiose transporter subunit IIB compare
JDDGAC_28290 baeS -2.7 -1.4 two-component system sensor histidine kinase BaeS compare
JDDGAC_01975 purR -2.6 -3.0 HTH-type transcriptional repressor PurR compare
JDDGAC_03315 -2.6 -0.9 hypothetical protein compare
JDDGAC_05820 eCs1768 -2.6 -0.9 DNA-binding protein compare
JDDGAC_06520 bor -2.5 -1.0 serum resistance lipoprotein Bor compare
JDDGAC_19415 -2.5 -2.3 DUF3251 domain-containing protein compare
JDDGAC_21455 sspA -2.4 -4.7 stringent starvation protein A compare
JDDGAC_29030 -2.4 -1.9 Putative prophage portal protein compare
JDDGAC_26840 nuoI -2.4 -2.7 NADH-quinone oxidoreductase subunit NuoI compare
JDDGAC_28905 Arg_trna -2.4 -0.9 tRNA-Arg(tcg) compare
JDDGAC_09900 ybiE -2.3 -2.0 Protein YbiE compare
JDDGAC_14610 -2.3 -2.1 hypothetical protein compare
JDDGAC_07640 -2.3 -1.2 DNA-binding protein compare
JDDGAC_14440 apaH -2.3 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_22440 tolC -2.3 -9.2 outer membrane channel protein TolC compare
JDDGAC_25440 guaA -2.3 -1.6 glutamine-hydrolyzing GMP synthase compare
JDDGAC_29980 sopA -2.3 -1.2 plasmid-partitioning protein SopA compare
JDDGAC_15250 -2.2 -0.9 Orf compare
JDDGAC_04170 ydcA -2.1 -2.0 Uncharacterized protein YdcA compare
JDDGAC_07065 -2.1 -1.3 DUF1391 domain-containing protein compare
JDDGAC_11240 fepG -2.1 -1.9 iron-enterobactin ABC transporter permease compare
JDDGAC_11975 -2.1 -2.8 Lon protease compare
JDDGAC_07825 -2.1 -0.8 Membrane protein compare
JDDGAC_21585 kdsC -2.1 -1.8 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
JDDGAC_08845 ompA -2.1 -4.2 outer membrane protein A compare
JDDGAC_04565 -2.0 -1.2 DUF1364 domain-containing protein compare
JDDGAC_18760 tisB -2.0 -1.0 Small toxic protein TisB compare
JDDGAC_28890 -2.0 -1.3 Serine/threonine-protein phosphatase compare
JDDGAC_29975 sopA -2.0 -4.2 plasmid-partitioning protein SopA compare
JDDGAC_10275 -2.0 -1.0 DUF1382 domain-containing protein compare
JDDGAC_01035 proQ -2.0 -3.1 RNA chaperone ProQ compare
JDDGAC_10170 -2.0 -1.9 recombinase RecA compare
JDDGAC_20740 aroK -2.0 -2.0 shikimate kinase AroK compare
JDDGAC_14890 holD -2.0 -0.8 DNA polymerase III subunit psi compare
JDDGAC_26945 arnD -2.0 -2.3 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase compare
JDDGAC_03590 marR -2.0 -2.9 multiple antibiotic resistance transcriptional regulator MarR compare
JDDGAC_02100 gstA -1.9 -2.3 glutathione transferase GstA compare
JDDGAC_07725 terC -1.9 -5.2 tellurium resistance membrane protein TerC conserved
JDDGAC_00935 yebF -1.9 -0.9 Protein YebF compare
JDDGAC_23570 yqeH -1.9 -1.3 Uncharacterized protein YqeH compare
JDDGAC_09100 serC -1.9 -5.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_00235 rcsA -1.9 -1.7 transcriptional regulator RcsA compare
JDDGAC_04820 -1.9 -1.3 Peptidase-S15 domain-containing protein compare
JDDGAC_12240 ppnP -1.9 -2.3 pyrimidine/purine nucleoside phosphorylase compare
JDDGAC_01205 dmlR -1.8 -1.3 DNA-binding transcriptional regulator DmlR compare
JDDGAC_21780 deaD -1.8 -3.1 ATP-dependent RNA helicase DeaD compare
JDDGAC_01060 yobH -1.8 -2.1 Uncharacterized protein YobH compare
JDDGAC_04680 racC -1.8 -0.9 Protein RacC compare
JDDGAC_11060 crcB -1.8 -1.6 fluoride efflux transporter CrcB compare
JDDGAC_26820 nuoE -1.8 -1.1 NADH-quinone oxidoreductase subunit NuoE compare
JDDGAC_12090 pgpA -1.7 -1.3 phosphatidylglycerophosphatase A compare
JDDGAC_25745 ppk1 -1.7 -6.7 polyphosphate kinase 1 compare
JDDGAC_08190 efeU -1.7 -0.9 Ferrous iron permease EfeU compare
JDDGAC_25535 -1.7 -1.3 hypothetical protein compare
JDDGAC_05645 -1.7 -1.2 tRNA-Xxx compare
JDDGAC_03175 eCs1768 -1.7 -0.8 DNA-binding protein compare
JDDGAC_04190 aldA -1.7 -2.3 aldehyde dehydrogenase compare
JDDGAC_01680 btuE -1.7 -2.0 bifunctional thioredoxin/glutathione peroxidase compare
JDDGAC_12935 -1.7 -1.3 hypothetical protein compare
JDDGAC_27740 -1.7 -0.9 regulator compare
JDDGAC_05175 rluB -1.7 -2.4 23S rRNA pseudouridine(2605) synthase RluB compare
JDDGAC_11820 apt -1.7 -2.8 adenine phosphoribosyltransferase compare
JDDGAC_26635 -1.7 -3.5 Protein DedA compare
JDDGAC_11280 hokE -1.7 -1.2 type I toxin-antitoxin system toxin HokE compare
JDDGAC_23100 serA -1.6 -6.5 phosphoglycerate dehydrogenase compare
JDDGAC_28010 yehS -1.6 -1.8 Uncharacterized protein YehS compare
JDDGAC_09810 mntR -1.6 -1.8 manganese-binding transcriptional regulator MntR compare
JDDGAC_29885 tnp-IS911 -1.6 -1.9 IS3 family IS911 transposase compare
JDDGAC_06825 -1.6 -0.9 phage tail tape measure protein compare
JDDGAC_18185 rffG -1.6 -6.7 dTDP-glucose 4,6-dehydratase compare
JDDGAC_28195 yegW -1.6 -2.0 Uncharacterized HTH-type transcriptional regulator YegW compare
JDDGAC_18180 rfbA -1.6 -5.3 glucose-1-phosphate thymidylyltransferase RfbA compare
JDDGAC_21770 nlpI -1.6 -6.4 lipoprotein NlpI compare
JDDGAC_02315 asr -1.6 -0.8 acid resistance repetitive basic protein Asr compare
JDDGAC_28205 -1.6 -1.6 ADP-ribosylglycohydrolase family protein compare
JDDGAC_24800 rnfH -1.6 -2.2 RnfH family protein compare
JDDGAC_13240 ymfM -1.6 -1.6 Uncharacterized protein YmfM compare
JDDGAC_16800 pgi -1.6 -4.3 glucose-6-phosphate isomerase compare
JDDGAC_01265 yeaK -1.6 -3.0 mischarged aminoacyl-tRNA deacylase compare
JDDGAC_07735 terA -1.5 -3.7 tellurium resistance protein TerA compare
JDDGAC_11065 cspE -1.5 -6.0 transcription antiterminator/RNA stability regulator CspE compare
JDDGAC_10695 -1.5 -0.9 Uncharacterized protein YbfC compare
JDDGAC_09030 cmoM -1.5 -1.8 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
JDDGAC_03775 gadB -1.5 -1.8 glutamate decarboxylase compare
JDDGAC_28130 fimA -1.5 -2.0 Uncharacterized fimbrial-like protein YehD compare
JDDGAC_21310 dusB -1.5 -4.3 tRNA dihydrouridine synthase DusB compare
JDDGAC_05255 -1.5 -0.8 hypothetical protein compare
JDDGAC_06890 -1.5 -0.7 HNH endonuclease compare
JDDGAC_06760 -1.5 -1.0 Mutator family transposase compare
JDDGAC_00800 cmoA -1.5 -2.3 carboxy-S-adenosyl-L-methionine synthase CmoA compare
JDDGAC_20555 glpD -1.5 -3.4 glycerol-3-phosphate dehydrogenase compare
JDDGAC_14710 thrL -1.5 -1.6 thr operon leader peptide compare
JDDGAC_06310 -1.5 -1.0 autotransporter outer membrane beta-barrel domain-containing protein compare
JDDGAC_10540 -1.5 -0.9 DUF4387 domain-containing protein compare
JDDGAC_25635 -1.5 -3.5 Acetyltransferase compare
JDDGAC_10570 sucC -1.5 -2.3 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_02130 rsxD -1.5 -4.4 electron transport complex subunit RsxD compare
JDDGAC_06605 icd -1.5 -1.8 NADP-dependent isocitrate dehydrogenase compare
JDDGAC_28590 wzzB -1.5 -4.7 LPS O-antigen chain length determinant protein WzzB compare
JDDGAC_02145 rsxA -1.4 -1.0 electron transport complex subunit RsxA compare
JDDGAC_00675 flhD -1.4 -1.8 flagellar transcriptional regulator FlhD compare
JDDGAC_26485 Arg_trna -1.4 -0.8 tRNA-Arg(cct) compare
JDDGAC_02135 rsxC -1.4 -2.7 electron transport complex subunit RsxC compare
JDDGAC_07480 -1.4 -0.9 Uncharacterized protein YmdA compare
JDDGAC_01015 rsmF -1.4 -1.6 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
JDDGAC_10750 pgm -1.4 -5.8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
JDDGAC_01870 fumD -1.4 -1.1 fumarate hydratase FumD compare
JDDGAC_28515 galF -1.4 -2.8 UTP--glucose-1-phosphate uridylyltransferase GalF compare
JDDGAC_25580 Arg_trna -1.4 -2.1 tRNA-Arg(tct) compare
JDDGAC_15675 cysQ -1.4 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_00985 yebY -1.4 -2.7 Uncharacterized protein YebY compare
JDDGAC_27165 apbE -1.4 -3.6 FAD:protein FMN transferase ApbE compare
JDDGAC_23960 -1.3 -1.7 LemA family protein compare
JDDGAC_28970 -1.3 -0.7 DNA-binding protein compare
JDDGAC_24350 -1.3 -2.4 PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components frag compare
JDDGAC_00595 -1.3 -1.1 DUF2511 domain-containing protein compare
JDDGAC_09530 artQ -1.3 -1.9 arginine ABC transporter permease ArtQ compare
JDDGAC_29185 -1.3 -1.6 restriction endonuclease compare
JDDGAC_10565 sucD -1.3 -2.1 succinate--CoA ligase subunit alpha compare
JDDGAC_23645 ygdR -1.3 -1.6 lipoprotein YgdR compare
JDDGAC_05600 rrrD -1.3 -1.9 endolysin compare
JDDGAC_00765 yecM -1.3 -2.2 VOC family protein compare
JDDGAC_04710 fimB -1.3 -1.8 site-specific integrase compare
JDDGAC_04760 abgR -1.3 -2.8 LysR family transcriptional regulator compare
JDDGAC_25585 -1.3 -1.0 hypothetical protein compare
JDDGAC_21460 sspB -1.3 -3.0 ClpXP protease specificity-enhancing factor compare
JDDGAC_05030 araJ -1.3 -2.2 Bcr/CflA family drug resistance efflux transporter compare
JDDGAC_27630 yehW -1.3 -2.5 glycine betaine ABC transporter permease YehW compare
JDDGAC_08820 helD -1.3 -3.1 DNA helicase IV compare
JDDGAC_05080 yciT -1.3 -1.9 DNA-binding transcriptional regulator YciT compare
JDDGAC_01465 ydjY -1.3 -3.1 Uncharacterized protein YdjY compare
JDDGAC_01085 -1.3 -1.6 Membrane protein compare
JDDGAC_11245 fepC -1.2 -2.1 ferrienterobactin ABC transporter ATPase compare
JDDGAC_06180 -1.2 -1.4 PTS-dependent dihydroxyacetone kinase compare
JDDGAC_00525 -1.2 -1.5 derepression protein compare
JDDGAC_26875 elaD -1.2 -1.0 ElaD/SseL family deubiquitinase compare
JDDGAC_03995 yncG -1.2 -1.5 Uncharacterized GST-like protein YncG compare
JDDGAC_18510 pstA -1.2 -1.7 phosphate ABC transporter permease PstA compare
JDDGAC_27870 -1.2 -1.2 terminase compare
JDDGAC_06045 -1.2 -1.4 hypothetical protein compare
JDDGAC_08195 -1.2 -1.1 hypothetical protein compare
JDDGAC_14865 ytjA -1.2 -0.7 UPF0391 membrane protein YtjA compare
JDDGAC_06365 yciE -1.2 -1.0 Protein YciE compare
JDDGAC_01430 ynjF -1.2 -1.6 Inner membrane protein YnjF compare
JDDGAC_29165 -1.2 -0.6 toxin of the YeeV-YeeU toxin-antitoxin system compare
JDDGAC_09290 oRF81 -1.2 -0.6 Uncharacterized protein in GpA 5'region compare
JDDGAC_09985 moaE -1.2 -1.1 molybdopterin synthase catalytic subunit MoaE compare
JDDGAC_26355 -1.2 -1.2 Uncharacterized lipoprotein YpdI compare
JDDGAC_25595 -1.2 -1.6 Phage protein compare
JDDGAC_12715 -1.2 -1.5 LuxR family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For phage Phage in Escherichia coli ECRC98

For phage Phage across organisms