Experiment set4S394 for Escherichia coli ECRC98

Compare to:

Bas10

200 most important genes:

  gene name fitness t score description  
JDDGAC_11920 glnK -4.4 -2.5 P-II family nitrogen regulator compare
JDDGAC_28445 wcaE -3.7 -2.1 colanic acid biosynthesis glycosyltransferase WcaE compare
JDDGAC_06700 -3.6 -1.5 DUF4222 domain-containing protein compare
JDDGAC_14420 surA -3.6 -4.3 peptidylprolyl isomerase SurA compare
JDDGAC_22880 yggT -3.5 -1.6 osmotic shock tolerance protein YggT compare
JDDGAC_01065 yebO -3.5 -1.1 Uncharacterized protein YebO compare
JDDGAC_14440 apaH -3.2 -2.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_01815 ydiH -2.9 -2.3 Uncharacterized protein YdiH compare
JDDGAC_04830 wcaG -2.8 -2.6 NAD-dependent dehydratase compare
JDDGAC_28970 -2.8 -1.3 DNA-binding protein compare
JDDGAC_05535 -2.7 -1.1 hypothetical protein compare
JDDGAC_10575 odhB -2.6 -2.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
JDDGAC_04680 racC -2.5 -1.2 Protein RacC compare
JDDGAC_11975 -2.5 -2.9 Lon protease compare
JDDGAC_25690 -2.5 -1.9 acyltransferase compare
JDDGAC_06230 fadR -2.5 -2.8 fatty acid metabolism transcriptional regulator FadR compare
JDDGAC_03725 ydeR -2.4 -2.3 Uncharacterized fimbrial-like protein YdeR compare
JDDGAC_00890 lpxM -2.4 -3.6 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
JDDGAC_08445 lomR -2.4 -1.1 Ail/Lom family protein compare
JDDGAC_12920 -2.3 -1.7 hypothetical protein compare
JDDGAC_09920 espX2 -2.3 -1.4 type III secretion system effector EspX2 compare
JDDGAC_12140 parD -2.2 -2.0 Antitoxin ParD compare
JDDGAC_27515 yeiS -2.2 -1.4 Uncharacterized protein YeiS compare
JDDGAC_04595 -2.2 -1.7 DUF551 domain-containing protein compare
JDDGAC_18405 mnmG -2.2 -4.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_23140 ygfB -2.2 -2.5 UPF0149 family protein YgfB compare
JDDGAC_03675 lsrA -2.1 -3.5 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
JDDGAC_10455 pal -2.1 -2.4 peptidoglycan-associated lipoprotein Pal compare
JDDGAC_01535 chbB -2.1 -1.6 PTS N,N'-diacetylchitobiose transporter subunit IIB compare
JDDGAC_04640 -2.0 -2.0 transcriptional regulator compare
JDDGAC_04565 -2.0 -1.4 DUF1364 domain-containing protein compare
JDDGAC_12265 proC -2.0 -3.0 pyrroline-5-carboxylate reductase compare
JDDGAC_07530 ycdY -1.9 -1.8 molecular chaperone YcdY compare
JDDGAC_20930 yheO -1.9 -2.4 Uncharacterized protein YheO compare
JDDGAC_00970 holE -1.9 -2.0 DNA polymerase III subunit theta compare
JDDGAC_24260 hycF -1.9 -2.3 formate hydrogenlyase subunit HycF compare
JDDGAC_07175 lpoB -1.9 -2.9 penicillin-binding protein activator LpoB compare
JDDGAC_06125 prfA -1.9 -1.5 peptide chain release factor 1 compare
JDDGAC_00770 cutC -1.8 -1.7 copper homeostasis protein CutC compare
JDDGAC_12115 nrdR -1.8 -1.2 transcriptional regulator NrdR compare
JDDGAC_04315 -1.8 -2.0 hypothetical protein compare
JDDGAC_16385 ytcA -1.8 -1.0 Uncharacterized protein YtcA compare
JDDGAC_15870 purA -1.8 -3.2 adenylosuccinate synthase compare
JDDGAC_27410 psuK -1.8 -1.2 pseudouridine kinase compare
JDDGAC_06305 minE -1.8 -0.8 cell division topological specificity factor MinE compare
JDDGAC_06430 -1.8 -0.8 phage tail protein compare
JDDGAC_18070 cyaA -1.8 -1.4 class I adenylate cyclase compare
JDDGAC_01530 osmE -1.8 -3.4 osmotically-inducible lipoprotein OsmE compare
JDDGAC_07225 fabF -1.8 -3.5 beta-ketoacyl-ACP synthase II compare
JDDGAC_03335 -1.8 -1.1 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
JDDGAC_03880 yddG -1.8 -1.5 aromatic amino acid efflux DMT transporter YddG compare
JDDGAC_26820 nuoE -1.8 -1.5 NADH-quinone oxidoreductase subunit NuoE compare
JDDGAC_00250 fliP -1.7 -2.8 flagellar type III secretion system pore protein FliP compare
JDDGAC_25440 guaA -1.7 -1.9 glutamine-hydrolyzing GMP synthase compare
JDDGAC_00675 flhD -1.7 -2.4 flagellar transcriptional regulator FlhD compare
JDDGAC_28760 kil -1.7 -1.3 Protein kil compare
JDDGAC_25045 rseA -1.7 -3.0 anti-sigma-E factor RseA compare
JDDGAC_10045 ybhB -1.7 -1.8 kinase inhibitor compare
JDDGAC_06365 yciE -1.7 -1.7 Protein YciE compare
JDDGAC_00155 hprS -1.7 -1.6 two-component system sensor histidine kinase HprS compare
JDDGAC_02315 asr -1.6 -1.0 acid resistance repetitive basic protein Asr compare
JDDGAC_25905 yffB -1.6 -1.5 ArsC family reductase compare
JDDGAC_26850 nuoK -1.6 -2.0 NADH-quinone oxidoreductase subunit NuoK compare
JDDGAC_29975 sopA -1.6 -3.3 plasmid-partitioning protein SopA compare
JDDGAC_06275 ycgL -1.5 -1.4 Protein YcgL compare
JDDGAC_06135 lolB -1.5 -1.4 lipoprotein insertase outer membrane protein LolB compare
JDDGAC_02170 add -1.5 -0.9 adenosine deaminase compare
JDDGAC_20840 -1.5 -1.0 Uncharacterized protein YhfG compare
JDDGAC_17880 fre -1.5 -4.3 NAD(P)H-flavin reductase compare
JDDGAC_02220 -1.5 -0.7 Putative outer membrane porin protein compare
JDDGAC_04485 -1.5 -1.1 Holin compare
JDDGAC_06890 -1.5 -0.8 HNH endonuclease compare
JDDGAC_00270 fliL -1.5 -2.0 flagellar basal body-associated protein FliL compare
JDDGAC_24735 rrrD -1.5 -0.9 lysozyme compare
JDDGAC_25435 guaB -1.4 -4.7 IMP dehydrogenase compare
JDDGAC_10565 sucD -1.4 -1.5 succinate--CoA ligase subunit alpha compare
JDDGAC_26745 yfcD -1.4 -1.1 NUDIX hydrolase YfcD compare
JDDGAC_08705 -1.4 -1.1 Rha family transcriptional regulator compare
JDDGAC_05620 -1.4 -1.3 hypothetical protein compare
JDDGAC_01395 ydjA -1.4 -1.1 NAD(P)H nitroreductase compare
JDDGAC_01225 yeaQ -1.4 -0.8 UPF0410 protein YeaQ compare
JDDGAC_00985 yebY -1.3 -2.6 Uncharacterized protein YebY compare
JDDGAC_13890 -1.3 -1.6 Protein YadX compare
JDDGAC_17715 typA -1.3 -7.2 ribosome-dependent GTPase TypA compare
JDDGAC_26765 yfbV -1.3 -0.7 UPF0208 membrane protein YfbV compare
JDDGAC_24450 emrR -1.3 -1.2 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
JDDGAC_02300 mdtI -1.3 -1.5 multidrug/spermidine efflux SMR transporter subunit MdtI compare
JDDGAC_18600 -1.3 -1.3 hypothetical protein compare
JDDGAC_27385 yeiW -1.3 -1.8 UPF0153 protein YeiW compare
JDDGAC_03640 uxaB -1.3 -2.1 tagaturonate reductase compare
JDDGAC_15540 treC -1.2 -3.4 alpha,alpha-phosphotrehalase compare
JDDGAC_21585 kdsC -1.2 -1.8 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
JDDGAC_03805 ddpX -1.2 -1.2 D-alanyl-D-alanine dipeptidase compare
JDDGAC_22870 rdgB -1.2 -1.6 XTP/dITP diphosphatase compare
JDDGAC_09000 gloC -1.2 -1.6 hydroxyacylglutathione hydrolase GloC compare
JDDGAC_10465 tolA -1.2 -1.3 cell envelope integrity protein TolA compare
JDDGAC_16590 -1.2 -1.5 DinI-like protein Z3916/ECs3483 compare
JDDGAC_23205 fldB -1.2 -4.0 flavodoxin FldB compare
JDDGAC_08130 cadC1 -1.2 -0.8 transcriptional regulator compare
JDDGAC_26865 nuoN -1.2 -3.1 NADH-quinone oxidoreductase subunit NuoN compare
JDDGAC_11000 rsfS -1.2 -0.9 ribosome silencing factor compare
JDDGAC_00880 znuA -1.2 -1.7 zinc ABC transporter substrate-binding protein ZnuA compare
JDDGAC_29170 cbtA -1.2 -1.3 type IV toxin-antitoxin system toxin CbtA compare
JDDGAC_20740 aroK -1.2 -1.8 shikimate kinase AroK compare
JDDGAC_28905 Arg_trna -1.2 -0.8 tRNA-Arg(tcg) compare
JDDGAC_29305 ycdB -1.2 -1.5 putative transcriptional regulatory protein YcdB compare
JDDGAC_23480 -1.2 -1.2 type III secretion apparatus protein OrgA/MxiK compare
JDDGAC_05690 -1.2 -1.3 phage tail protein compare
JDDGAC_27575 yohP -1.2 -1.6 protein YohP compare
JDDGAC_04080 hicA -1.2 -0.8 type II toxin-antitoxin system mRNA interferase toxin HicA compare
JDDGAC_14435 apaG -1.1 -1.3 Co2+/Mg2+ efflux protein ApaG compare
JDDGAC_09600 ybjN -1.1 -1.6 Uncharacterized protein YbjN compare
JDDGAC_14075 acnB -1.1 -1.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
JDDGAC_11060 crcB -1.1 -1.1 fluoride efflux transporter CrcB compare
JDDGAC_08825 yccF -1.1 -1.6 YccF domain-containing protein compare
JDDGAC_27870 -1.1 -1.3 terminase compare
JDDGAC_05695 gp41 -1.1 -1.4 Phage tail assembly chaperone proteins, E, or 41 or 14 compare
JDDGAC_00440 insI1 -1.1 -1.7 IS30 family transposase compare
JDDGAC_00265 fliM -1.1 -1.6 flagellar motor switch protein FliM compare
JDDGAC_17455 pfkA -1.1 -1.7 6-phosphofructokinase compare
JDDGAC_13010 -1.1 -1.1 Phage-associated protein compare
JDDGAC_03780 gadC -1.1 -2.7 acid resistance gamma-aminobutyrate antiporter GadC compare
JDDGAC_14450 -1.1 -1.3 antitoxin compare
JDDGAC_28890 -1.1 -1.1 Serine/threonine-protein phosphatase compare
JDDGAC_25415 bamB -1.1 -2.2 outer membrane protein assembly factor BamB compare
JDDGAC_19215 rph -1.1 -2.8 ribonuclease PH compare
JDDGAC_14625 nhaA -1.0 -5.4 Na+/H+ antiporter NhaA compare
JDDGAC_28960 -1.0 -2.0 lysis protein compare
JDDGAC_10765 ybfE -1.0 -2.1 LexA regulated protein compare
JDDGAC_12490 cynT -1.0 -2.4 carbonic anhydrase CynT compare
JDDGAC_23545 -1.0 -0.7 Uncharacterized protein YqeK compare
JDDGAC_05780 -1.0 -1.3 hypothetical protein compare
JDDGAC_15620 chpB -1.0 -1.7 type II toxin-antitoxin system ChpB family toxin compare
JDDGAC_05645 -1.0 -0.9 tRNA-Xxx compare
JDDGAC_27665 -1.0 -1.5 DUF551 domain-containing protein compare
JDDGAC_15075 yjiL -1.0 -1.3 Uncharacterized protein YjiL compare
JDDGAC_13385 dinJ -1.0 -1.4 type II toxin-antitoxin system antitoxin DinJ compare
JDDGAC_29015 -1.0 -1.2 phage major capsid protein compare
JDDGAC_07460 mdoG -1.0 -2.3 glucans biosynthesis protein MdoG compare
JDDGAC_27490 mglB -1.0 -2.0 galactose/glucose ABC transporter substrate-binding protein MglB compare
JDDGAC_00285 fliI -1.0 -1.2 flagellum-specific ATP synthase FliI compare
JDDGAC_00520 -1.0 -1.7 Phage protein compare
JDDGAC_07040 -1.0 -0.8 replication protein compare
JDDGAC_21670 greA -1.0 -1.8 transcription elongation factor GreA compare
JDDGAC_27790 ylcG -1.0 -1.1 Uncharacterized protein YlcG compare
JDDGAC_01685 btuD -1.0 -1.3 vitamin B12 ABC transporter ATP-binding protein BtuD compare
JDDGAC_04350 -1.0 -1.7 phage tail protein compare
JDDGAC_28265 -1.0 -1.6 Uncharacterized protein YegR compare
JDDGAC_12325 iprA -1.0 -2.1 hydrogen peroxide resistance inhibitor IprA compare
JDDGAC_01035 proQ -1.0 -2.1 RNA chaperone ProQ compare
JDDGAC_24185 pphB -0.9 -1.8 protein-serine/threonine phosphatase compare
JDDGAC_13950 pcnB -0.9 -2.0 polynucleotide adenylyltransferase PcnB compare
JDDGAC_19355 envC -0.9 -2.9 murein hydrolase activator EnvC compare
JDDGAC_28290 baeS -0.9 -1.0 two-component system sensor histidine kinase BaeS compare
JDDGAC_06145 prs -0.9 -1.2 ribose-phosphate diphosphokinase compare
JDDGAC_28150 rcnB -0.9 -2.4 Ni(II)/Co(II) efflux transporter accessory subunit RcnB compare
JDDGAC_02485 -0.9 -1.0 DUF977 domain-containing protein compare
JDDGAC_11240 fepG -0.9 -1.8 iron-enterobactin ABC transporter permease compare
JDDGAC_23510 -0.9 -2.5 Transcriptional regulator compare
JDDGAC_26710 -0.9 -3.2 Transposase compare
JDDGAC_12240 ppnP -0.9 -1.1 pyrimidine/purine nucleoside phosphorylase compare
JDDGAC_04195 ydcF -0.9 -0.9 Protein YdcF compare
JDDGAC_12730 -0.9 -2.7 Adhesin compare
JDDGAC_12090 pgpA -0.9 -1.0 phosphatidylglycerophosphatase A compare
JDDGAC_28240 gatB -0.9 -1.1 PTS galactitol transporter subunit IIB compare
JDDGAC_28675 sbcB -0.9 -2.3 exodeoxyribonuclease I compare
JDDGAC_00590 -0.9 -2.0 Putative transmembrane protein compare
JDDGAC_06045 -0.9 -1.3 hypothetical protein compare
JDDGAC_05625 -0.9 -1.0 Bacteriophage Mu, Gp27 compare
JDDGAC_28860 -0.9 -3.1 phage N-6-adenine-methyltransferase compare
JDDGAC_06825 -0.9 -0.6 phage tail tape measure protein compare
JDDGAC_04875 ycjV -0.9 -1.4 Uncharacterized ABC transporter ATP-binding protein YcjV compare
JDDGAC_22545 ftsP -0.9 -1.4 cell division protein FtsP compare
JDDGAC_00950 yebE -0.9 -1.5 Inner membrane protein YebE compare
JDDGAC_15485 tabA -0.9 -1.9 toxin-antitoxin biofilm protein TabA compare
JDDGAC_07155 ndh -0.9 -1.2 NADH-quinone dehydrogenase compare
JDDGAC_06515 -0.9 -0.8 DUF1398 domain-containing protein compare
JDDGAC_08145 dgcT -0.9 -1.0 putative diguanylate cyclase DgcT compare
JDDGAC_00375 fliZ -0.9 -1.3 flagella biosynthesis regulatory protein FliZ compare
JDDGAC_08655 -0.9 -1.2 Endodeoxyribonuclease RusA compare
JDDGAC_14270 rsmH -0.9 -0.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
JDDGAC_30020 -0.9 -2.0 hypothetical protein compare
JDDGAC_05765 -0.9 -2.8 Hypothetical prophage protein compare
JDDGAC_20355 -0.9 -1.2 DUF1778 domain-containing protein compare
JDDGAC_17740 -0.9 -1.3 Uncharacterized protein YshB compare
JDDGAC_13235 -0.9 -2.1 helix-turn-helix domain-containing protein compare
JDDGAC_10735 speFL -0.9 -1.2 Leader peptide SpeFL compare
JDDGAC_08905 pyrD -0.8 -1.5 quinone-dependent dihydroorotate dehydrogenase compare
JDDGAC_06680 -0.8 -2.0 PerC family transcriptional regulator compare
JDDGAC_07415 yceJ -0.8 -1.6 Cytochrome b561-like protein compare
JDDGAC_23505 ygeI -0.8 -1.4 Uncharacterized protein YgeI compare
JDDGAC_04810 pgrR -0.8 -2.2 DNA-binding transcriptional regulator PgrR compare
JDDGAC_03900 espR1 -0.8 -1.2 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_26485 Arg_trna -0.8 -1.5 tRNA-Arg(cct) compare
JDDGAC_19120 tnp-IS3 -0.8 -0.8 IS3 family transposase compare
JDDGAC_11470 cysS -0.8 -0.5 cysteine--tRNA ligase compare
JDDGAC_29885 tnp-IS911 -0.8 -1.6 IS3 family IS911 transposase compare
JDDGAC_25025 srmB -0.8 -3.3 ATP-dependent RNA helicase SrmB compare
JDDGAC_04130 ydcH -0.8 -0.5 Uncharacterized protein YdcH compare
JDDGAC_29035 -0.8 -0.8 head-tail connector protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms