Experiment set4S360 for Escherichia coli ECRC101

Compare to:

Control_ECRC101

200 most important genes:

  gene name fitness t score description  
MCAODC_07150 acpP -4.8 -1.8 acyl carrier protein compare
MCAODC_16435 yncG -4.3 -2.7 Uncharacterized GST-like protein YncG compare
MCAODC_22925 fabF -4.0 -2.1 beta-ketoacyl-ACP synthase II compare
MCAODC_16780 lsrG -3.9 -2.7 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MCAODC_01360 apaH -3.6 -2.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
MCAODC_00995 acnB -3.4 -2.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
MCAODC_13595 sixA -3.2 -1.7 phosphohistidine phosphatase SixA compare
MCAODC_15470 yubJ -3.1 -4.0 Uncharacterized protein YubJ compare
MCAODC_15400 ccdB -3.1 -1.1 type II toxin-antitoxin system toxin CcdB compare
MCAODC_23535 terW -3.1 -2.6 tellurium resistance protein TerW compare
MCAODC_27555 clpX -2.9 -2.8 ATP-dependent protease ATP-binding subunit ClpX compare
MCAODC_05785 cesAB -2.7 -3.1 chaperone for EspA and EspB compare
MCAODC_22960 yceD -2.5 -3.7 23S rRNA accumulation protein YceD compare
MCAODC_21670 galU -2.3 -2.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MCAODC_08200 fis -2.2 -1.6 DNA-binding transcriptional regulator Fis compare
MCAODC_01340 surA -2.1 -3.5 peptidylprolyl isomerase SurA compare
MCAODC_07520 -2.1 -4.5 NfuA family Fe-S biogenesis protein compare
MCAODC_12720 ptsI -2.1 -2.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
MCAODC_20155 -2.1 -1.6 DUF1482 domain-containing protein compare
MCAODC_17675 ynfL -2.1 -2.8 Uncharacterized HTH-type transcriptional regulator YnfL compare
MCAODC_01110 secM -2.1 -2.1 secA translation cis-regulator SecM compare
MCAODC_13950 elaD -2.0 -1.7 ElaD/SseL family deubiquitinase compare
MCAODC_19060 kdgA -1.9 -1.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
MCAODC_06270 cysE -1.8 -0.9 serine O-acetyltransferase compare
MCAODC_24530 -1.8 -1.8 DUF1482 domain-containing protein compare
MCAODC_22765 -1.8 -2.9 DUF1391 domain-containing protein compare
MCAODC_18475 ves -1.8 -1.6 environmental stress-induced protein Ves compare
MCAODC_11890 srmB -1.8 -6.3 ATP-dependent RNA helicase SrmB compare
MCAODC_16035 ogt -1.7 -2.2 methylated-DNA--[protein]-cysteine S-methyltransferase compare
MCAODC_02745 purA -1.6 -1.5 adenylosuccinate synthase compare
MCAODC_15150 repA2 -1.6 -5.6 Replication regulatory protein repA2 compare
MCAODC_07455 glpD -1.6 -4.1 glycerol-3-phosphate dehydrogenase compare
MCAODC_15185 tra5 -1.6 -2.3 IS3 family transposase compare
MCAODC_12455 -1.5 -1.0 hypothetical protein compare
MCAODC_19425 -1.5 -1.9 Phage protein compare
MCAODC_13880 nuoA -1.5 -2.7 NADH-quinone oxidoreductase subunit NuoA compare
MCAODC_20355 yeeX -1.5 -1.8 DUF496 domain-containing protein compare
MCAODC_16675 ydeM -1.5 -1.3 anaerobic sulfatase maturase compare
MCAODC_16155 ydbL -1.5 -1.4 DUF1318 domain-containing protein compare
MCAODC_23585 -1.5 -1.2 Membrane protein compare
MCAODC_19070 zwf -1.5 -1.2 glucose-6-phosphate dehydrogenase compare
MCAODC_27545 -1.5 -4.2 Lon protease compare
MCAODC_18235 -1.5 -2.6 hypothetical protein compare
MCAODC_10780 mazE -1.4 -1.4 type II toxin-antitoxin system antitoxin MazE compare
MCAODC_20220 Asn_trna -1.4 -1.0 tRNA-Asn(gtt) compare
MCAODC_08640 rbfA -1.4 -1.9 30S ribosome-binding factor RbfA compare
MCAODC_20290 -1.4 -2.0 hypothetical protein compare
MCAODC_15550 tra5 -1.4 -3.1 Transposase InsO and inactivated derivatives compare
MCAODC_10315 -1.4 -1.9 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
MCAODC_23345 -1.4 -1.0 hypothetical protein compare
MCAODC_12540 eutS -1.4 -0.7 Bacterial microcompartment shell protein EutS compare
MCAODC_17155 -1.4 -1.7 Prophage protein compare
MCAODC_05995 -1.4 -0.9 toxin compare
MCAODC_13900 nuoF -1.4 -4.6 NADH-quinone oxidoreductase subunit NuoF compare
MCAODC_11930 lepA -1.4 -2.0 translation elongation factor 4 compare
MCAODC_04590 typA -1.4 -7.7 ribosome-dependent GTPase TypA compare
MCAODC_05825 grlR -1.3 -1.2 type III secretion system LEE GrlA-binding negative regulator GrlR compare
MCAODC_08415 arcB -1.3 -3.0 aerobic respiration two-component sensor histidine kinase ArcB compare
MCAODC_01520 fimC -1.3 -1.5 molecular chaperone compare
MCAODC_26130 sucD -1.3 -3.1 succinate--CoA ligase subunit alpha compare
MCAODC_17035 -1.3 -1.3 head-tail connector protein compare
MCAODC_17775 ydgA -1.3 -1.2 Protein YdgA compare
MCAODC_15430 sopA -1.3 -2.0 plasmid-partitioning protein SopA compare
MCAODC_04760 fre -1.3 -4.6 NAD(P)H-flavin reductase compare
MCAODC_15575 yciE -1.3 -1.0 Protein YciE compare
MCAODC_26705 yldA -1.3 -1.8 Protein YldA compare
MCAODC_18255 ydiT -1.3 -1.4 Ferredoxin-like protein YdiT compare
MCAODC_04330 pfkA -1.3 -1.2 6-phosphofructokinase compare
MCAODC_22420 -1.3 -1.4 DUF4222 domain-containing protein compare
MCAODC_15370 -1.3 -1.3 W0044 compare
MCAODC_22410 -1.3 -2.4 hypothetical protein compare
MCAODC_24025 rutF -1.2 -2.5 pyrimidine utilization flavin reductase protein F compare
MCAODC_06955 pitA -1.2 -1.7 inorganic phosphate transporter PitA compare
MCAODC_24440 -1.2 -1.7 Hok/gef family compare
MCAODC_15450 -1.2 -1.4 hypothetical protein compare
MCAODC_09425 ftsP -1.2 -1.4 cell division protein FtsP compare
MCAODC_15495 rsmA -1.2 -2.8 SAM-dependent methyltransferase compare
MCAODC_20805 -1.2 -1.6 Phage tail assembly chaperone proteins, E, or 41 or 14 compare
MCAODC_08625 nusA -1.2 -0.9 Transcription termination/antitermination protein NusA compare
MCAODC_23280 yeeS -1.2 -0.9 UPF0758 protein YeeS compare
MCAODC_20605 wcaE -1.2 -1.9 colanic acid biosynthesis glycosyltransferase WcaE compare
MCAODC_18970 yebV -1.2 -1.9 Uncharacterized protein YebV compare
MCAODC_20200 rfaF -1.2 -2.2 Glycosyltransferase family 9 (heptosyltransferase) compare
MCAODC_17855 rsxA -1.2 -2.2 electron transport complex subunit RsxA compare
MCAODC_08130 Thr_trna -1.2 -0.7 tRNA-Thr(ggt) compare
MCAODC_15950 ycjW -1.1 -1.9 Uncharacterized HTH-type transcriptional regulator YcjW compare
MCAODC_11640 -1.1 -1.0 DinI-like protein Z3916/ECs3483 compare
MCAODC_03260 ytcA -1.1 -1.0 Uncharacterized protein YtcA compare
MCAODC_21600 clsA -1.1 -2.0 cardiolipin synthase ClsA compare
MCAODC_01530 fimD -1.1 -2.3 fimbrial assembly protein compare
MCAODC_08675 deaD -1.1 -4.9 ATP-dependent RNA helicase DeaD compare
MCAODC_01545 nhaA -1.1 -4.6 Na+/H+ antiporter NhaA compare
MCAODC_11660 rnfH -1.1 -2.5 RnfH family protein compare
MCAODC_23755 ycdU -1.1 -1.9 Uncharacterized protein YcdU compare
MCAODC_16570 yddM -1.1 -1.6 HigA family addiction module antitoxin compare
MCAODC_17795 uidA -1.1 -1.8 beta-glucuronidase compare
MCAODC_13905 nuoG -1.1 -3.8 NADH-quinone oxidoreductase subunit NuoG compare
MCAODC_23025 flgD -1.1 -3.2 flagellar hook assembly protein FlgD compare
MCAODC_13580 yfcZ -1.0 -0.6 UPF0381 protein YfcZ compare
MCAODC_22415 -1.0 -3.9 DNA primase compare
MCAODC_16015 ynaI -1.0 -1.5 low conductance mechanosensitive channel YnaI compare
MCAODC_03490 -1.0 -0.8 phage tail protein compare
MCAODC_04200 -1.0 -1.7 Rhs element protein compare
MCAODC_11285 gshA -1.0 -3.9 glutamate--cysteine ligase compare
MCAODC_27560 clpP -1.0 -1.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
MCAODC_24780 gloC -1.0 -0.9 hydroxyacylglutathione hydrolase GloC compare
MCAODC_01560 dnaJ -1.0 -1.0 molecular chaperone DnaJ compare
MCAODC_09085 higA -1.0 -0.8 type II toxin-antitoxin system antitoxin HigA compare
MCAODC_04235 hslV -1.0 -2.0 ATP-dependent protease subunit HslV compare
MCAODC_06165 rfaG -1.0 -3.5 Lipopolysaccharide core biosynthesis protein RfaG compare
MCAODC_21030 gatA -1.0 -0.8 PTS galactitol transporter subunit IIA compare
MCAODC_15335 ehxC -1.0 -1.6 enterohemolysin-activating lysine-acyltransferase EhxC compare
MCAODC_25650 nleB2 -1.0 -2.0 type III secretion system effector arginine glycosyltransferase NleB2 compare
MCAODC_26810 fepG -1.0 -3.0 iron-enterobactin ABC transporter permease compare
MCAODC_04780 tatC -1.0 -1.7 Sec-independent protein translocase subunit TatC compare
MCAODC_22520 rri1 -0.9 -1.4 phage tail protein compare
MCAODC_07680 frlD -0.9 -1.1 fructoselysine 6-kinase compare
MCAODC_20860 -0.9 -2.7 Spike protein compare
MCAODC_18385 yniA -0.9 -2.2 putative ketoamine kinase YniA compare
MCAODC_18915 yebO -0.9 -2.8 Uncharacterized protein YebO compare
MCAODC_00025 -0.9 -2.1 lysozyme compare
MCAODC_07540 feoC -0.9 -1.9 [Fe-S]-dependent transcriptional repressor FeoC compare
MCAODC_17055 -0.9 -2.8 Peptidase U35, phage prohead HK97 compare
MCAODC_28280 -0.9 -2.5 hypothetical protein compare
MCAODC_16525 narU -0.9 -2.4 nitrate/nitrite transporter NarU compare
MCAODC_18980 pphA -0.9 -1.5 protein-serine/threonine phosphatase compare
MCAODC_23270 -0.9 -2.7 Phage-related protein compare
MCAODC_23965 efeU -0.9 -2.8 Ferrous iron permease EfeU compare
MCAODC_11635 espM2 -0.9 -0.8 T3SS effector guanine nucleotide exchange factor EspM2 compare
MCAODC_15865 pspB -0.9 -0.9 envelope stress response membrane protein PspB compare
MCAODC_27490 glnK -0.9 -1.4 P-II family nitrogen regulator compare
MCAODC_11555 -0.9 -1.0 hypothetical protein compare
MCAODC_05855 escI -0.9 -1.4 Type III secretion system inner rod component EscI compare
MCAODC_26805 fepD -0.9 -2.3 ferrienterobactin ABC transporter permease compare
MCAODC_23670 -0.9 -1.0 restriction endonuclease compare
MCAODC_04650 polA -0.9 -0.8 DNA polymerase I compare
MCAODC_08720 yhbO -0.9 -2.0 protein/nucleic acid deglycase compare
MCAODC_18565 ynjH -0.9 -1.0 Uncharacterized protein YnjH compare
MCAODC_14980 -0.9 -0.9 SAR-endolysin compare
MCAODC_08530 sfsB -0.9 -1.2 DNA-binding transcriptional regulator SfsB compare
MCAODC_15655 yciN -0.9 -1.6 Protein YciN compare
MCAODC_21800 sirB2 -0.9 -2.5 invasion regulator SirB2 compare
MCAODC_14885 ybcK -0.8 -0.9 Uncharacterized protein YbcK compare
MCAODC_20610 wcaD -0.8 -3.6 putative colanic acid polymerase WcaD compare
MCAODC_00800 yadW -0.8 -0.6 Protein YadW compare
MCAODC_02755 hflC -0.8 -1.7 protease modulator HflC compare
MCAODC_21305 -0.8 -0.9 phage tail tape measure protein compare
MCAODC_07640 aroK -0.8 -3.4 shikimate kinase AroK compare
MCAODC_17705 mdtJ -0.8 -1.6 multidrug/spermidine efflux SMR transporter subunit MdtJ compare
MCAODC_13915 nuoI -0.8 -1.9 NADH-quinone oxidoreductase subunit NuoI compare
MCAODC_15990 -0.8 -1.6 Hydrolase compare
MCAODC_10330 flhB -0.8 -0.7 EscU/YscU/HrcU family type III secretion system export apparatus switch protein compare
MCAODC_25715 -0.8 -1.6 phage tail protein compare
MCAODC_19155 nudB -0.8 -1.7 dihydroneopterin triphosphate diphosphatase compare
MCAODC_22435 -0.8 -1.5 hypothetical protein compare
MCAODC_14170 nrdA -0.8 -1.0 ribonucleoside-diphosphate reductase subunit alpha compare
MCAODC_11410 yqaE -0.8 -2.2 UPF0057 membrane protein YqaE compare
MCAODC_16775 lsrF -0.8 -1.9 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase compare
MCAODC_19700 fliJ -0.8 -1.8 flagella biosynthesis chaperone FliJ compare
MCAODC_15350 ehxD -0.8 -2.5 enterohemolysin T1SS ABC transporter subunit EhxD compare
MCAODC_15635 rluB -0.8 -2.1 23S rRNA pseudouridine(2605) synthase RluB compare
MCAODC_03200 phnO -0.8 -2.6 aminoalkylphosphonate N-acetyltransferase compare
MCAODC_25120 -0.8 -1.4 hypothetical protein compare
MCAODC_16725 fimA -0.8 -1.0 type 1 fimbrial major subunit FimA compare
MCAODC_13935 nuoM -0.8 -2.4 NADH-quinone oxidoreductase subunit M compare
MCAODC_16550 yddG -0.8 -0.9 aromatic amino acid efflux DMT transporter YddG compare
MCAODC_18025 purR -0.8 -2.9 HTH-type transcriptional repressor PurR compare
MCAODC_23180 -0.8 -1.6 Uncharacterized protein YmdA compare
MCAODC_13885 nuoB -0.8 -2.2 NADH-quinone oxidoreductase subunit NuoB compare
MCAODC_15735 yciZ -0.8 -1.2 UPF0509 protein YciZ compare
MCAODC_20475 perB -0.8 -2.2 GDP-perosamine N-acetyltransferase compare
MCAODC_11200 srlB -0.8 -1.2 PTS glucitol/sorbitol transporter subunit IIA compare
MCAODC_04480 yiiE -0.8 -1.4 Uncharacterized protein YiiE compare
MCAODC_15435 sopA -0.8 -0.5 plasmid-partitioning protein SopA compare
MCAODC_13930 nuoL -0.8 -3.4 NADH-quinone oxidoreductase subunit L compare
MCAODC_23205 cgsD -0.8 -2.2 transcriptional regulator CsgD compare
MCAODC_12295 guaA -0.8 -1.0 glutamine-hydrolyzing GMP synthase compare
MCAODC_06170 rfaP -0.8 -1.7 lipopolysaccharide core heptose(I) kinase RfaP compare
MCAODC_19225 yecT -0.8 -1.0 Uncharacterized protein YecT compare
MCAODC_20855 -0.8 -2.4 baseplate assembly protein compare
MCAODC_23215 cgsF -0.8 -1.7 curli production assembly/transport protein CsgF compare
MCAODC_21010 glpR -0.8 -0.7 transcriptional regulator compare
MCAODC_21025 gatB -0.8 -0.7 PTS galactitol transporter subunit IIB compare
MCAODC_04890 -0.8 -2.2 DUF3289 domain-containing protein compare
MCAODC_24505 ydfB -0.8 -0.8 Uncharacterized protein YdfB compare
MCAODC_06205 rfaF -0.8 -1.0 ADP-heptose--LPS heptosyltransferase RfaF compare
MCAODC_20785 ogrK -0.7 -1.9 prophage transcriptional regulator OgrK compare
MCAODC_16200 azoR -0.7 -2.4 FMN-dependent NADH-azoreductase compare
MCAODC_25540 ybhP -0.7 -3.2 Uncharacterized protein YbhP compare
MCAODC_08660 pnp -0.7 -2.4 polyribonucleotide nucleotidyltransferase compare
MCAODC_22980 rne -0.7 -1.4 ribonuclease E compare
MCAODC_16855 marB -0.7 -0.8 multiple antibiotic resistance protein MarB compare
MCAODC_23660 opgE -0.7 -1.1 phosphoethanolamine transferase compare
MCAODC_24855 ihfB -0.7 -1.0 integration host factor subunit beta compare
MCAODC_20480 cpsG -0.7 -0.8 colanic acid biosynthesis phosphomannomutase CpsG compare
MCAODC_04950 cyaA -0.7 -2.0 class I adenylate cyclase compare
MCAODC_20820 spoIVCA -0.7 -1.3 DNA-invertase compare
MCAODC_27835 proC -0.7 -1.6 pyrroline-5-carboxylate reductase compare
MCAODC_08450 ptsN -0.7 -1.0 PTS IIA-like nitrogen regulatory protein PtsN compare
MCAODC_14760 -0.7 -2.3 DUF551 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in no phage control experiments

For no phage control No phage across organisms