Experiment set4S355 for Escherichia coli ECRC101

Compare to:

Bas58

200 most important genes:

  gene name fitness t score description  
MCAODC_06190 rfaB -7.0 -6.8 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
MCAODC_20530 wcaA -6.9 -3.6 glycosyl transferase compare
MCAODC_20540 -6.8 -12.3 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
MCAODC_12825 pdeA -6.4 -8.8 putative cyclic di-GMP phosphodiesterase PdeA compare
MCAODC_06185 rfaJ -6.2 -5.9 glucosyltransferase compare
MCAODC_20475 perB -6.1 -4.2 GDP-perosamine N-acetyltransferase compare
MCAODC_05085 wecA -6.1 -16.8 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
MCAODC_09775 yggS -6.0 -11.5 pyridoxal phosphate homeostasis protein compare
MCAODC_20485 manC2 -5.8 -3.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
MCAODC_01520 fimC -5.8 -1.7 molecular chaperone compare
MCAODC_08200 fis -5.5 -2.8 DNA-binding transcriptional regulator Fis compare
MCAODC_20835 -5.4 -2.8 tail fiber assembly protein compare
MCAODC_06195 rfaL -5.3 -8.6 O-antigen ligase RfaL compare
MCAODC_09320 tolC -5.0 -9.0 outer membrane channel protein TolC compare
MCAODC_08350 sspA -4.9 -6.7 stringent starvation protein A compare
MCAODC_17770 manA -4.8 -2.0 mannose-6-phosphate isomerase compare
MCAODC_08625 nusA -4.6 -2.0 Transcription termination/antitermination protein NusA compare
MCAODC_08900 yhaB -4.6 -1.4 Uncharacterized protein YhaB compare
MCAODC_25195 -4.5 -1.3 DUF1418 domain-containing protein compare
MCAODC_22960 yceD -4.3 -3.0 23S rRNA accumulation protein YceD compare
MCAODC_04590 typA -4.3 -14.6 ribosome-dependent GTPase TypA compare
MCAODC_23215 cgsF -4.3 -2.7 curli production assembly/transport protein CsgF compare
MCAODC_21675 rssB -4.3 -2.9 two-component system response regulator RssB compare
MCAODC_06070 rpoZ -4.0 -1.6 DNA-directed RNA polymerase subunit omega compare
MCAODC_27385 ybaB -4.0 -1.7 YbaB/EbfC family nucleoid-associated protein compare
MCAODC_08205 dusB -4.0 -10.8 tRNA dihydrouridine synthase DusB compare
MCAODC_20480 cpsG -3.8 -2.2 colanic acid biosynthesis phosphomannomutase CpsG compare
MCAODC_00680 skp -3.8 -2.8 molecular chaperone Skp compare
MCAODC_08595 secG -3.8 -1.1 preprotein translocase subunit SecG compare
MCAODC_14235 rcsB -3.8 -6.1 transcriptional regulator RcsB compare
MCAODC_10025 pepP -3.7 -8.2 Xaa-Pro aminopeptidase compare
MCAODC_12815 Ala_trna -3.6 -1.2 tRNA-Ala(ggc) compare
MCAODC_10780 mazE -3.6 -1.5 type II toxin-antitoxin system antitoxin MazE compare
MCAODC_04185 metJ -3.6 -3.0 met regulon transcriptional regulator MetJ compare
MCAODC_17855 rsxA -3.5 -2.1 electron transport complex subunit RsxA compare
MCAODC_01340 surA -3.5 -4.7 peptidylprolyl isomerase SurA compare
MCAODC_25935 galE -3.4 -8.2 UDP-glucose 4-epimerase GalE compare
MCAODC_04330 pfkA -3.4 -2.2 6-phosphofructokinase compare
MCAODC_27555 clpX -3.4 -2.3 ATP-dependent protease ATP-binding subunit ClpX compare
MCAODC_12720 ptsI -3.3 -2.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
MCAODC_00995 acnB -3.3 -2.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
MCAODC_05125 ppiC -3.2 -1.7 peptidylprolyl isomerase PpiC compare
MCAODC_04760 fre -3.2 -7.8 NAD(P)H-flavin reductase compare
MCAODC_12270 bamB -3.2 -6.8 outer membrane protein assembly factor BamB compare
MCAODC_06175 waaO -3.2 -4.4 lipopolysaccharide 3-alpha-galactosyltransferase compare
MCAODC_05400 pstB -3.2 -2.1 phosphate ABC transporter ATP-binding protein PstB compare
MCAODC_09015 mzrA -3.1 -6.1 EnvZ/OmpR regulon moderator MzrA compare
MCAODC_16950 nleG2-3 -3.0 -2.6 DUF1076 domain-containing protein compare
MCAODC_07640 aroK -3.0 -7.8 shikimate kinase AroK compare
MCAODC_01260 -2.9 -2.1 hypothetical protein compare
MCAODC_19090 lpxM -2.9 -4.1 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
MCAODC_05285 mioC -2.8 -6.3 FMN-binding protein MioC compare
MCAODC_26145 sucA -2.8 -2.7 2-oxoglutarate dehydrogenase E1 component compare
MCAODC_05365 -2.8 -1.2 fimbrial chaperone protein compare
MCAODC_20525 wzy -2.8 -3.8 O157 family O-antigen polymerase compare
MCAODC_24775 aspC -2.7 -2.1 aspartate transaminase compare
MCAODC_12540 eutS -2.7 -1.1 Bacterial microcompartment shell protein EutS compare
MCAODC_18255 ydiT -2.7 -1.8 Ferredoxin-like protein YdiT compare
MCAODC_14670 yohP -2.7 -2.0 protein YohP compare
MCAODC_02435 yjgA -2.6 -6.1 ribosome-associated protein compare
MCAODC_00185 Thr_trna -2.6 -1.1 tRNA-Thr(cgt) compare
MCAODC_17875 rsxG -2.6 -3.1 electron transport complex subunit RsxG compare
MCAODC_15970 tpx -2.6 -3.2 thiol peroxidase compare
MCAODC_08415 arcB -2.5 -4.4 aerobic respiration two-component sensor histidine kinase ArcB compare
MCAODC_17860 rsxB -2.5 -3.0 electron transport complex subunit RsxB compare
MCAODC_07455 glpD -2.5 -6.0 glycerol-3-phosphate dehydrogenase compare
MCAODC_12330 ppk1 -2.5 -9.5 polyphosphate kinase 1 compare
MCAODC_20490 wbdQ -2.5 -1.4 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
MCAODC_20535 galF -2.4 -2.8 UTP--glucose-1-phosphate uridylyltransferase GalF compare
MCAODC_15865 pspB -2.4 -1.2 envelope stress response membrane protein PspB compare
MCAODC_26040 tolQ -2.3 -1.4 Tol-Pal system protein TolQ compare
MCAODC_19155 nudB -2.3 -3.8 dihydroneopterin triphosphate diphosphatase compare
MCAODC_27545 -2.2 -5.8 Lon protease compare
MCAODC_19425 -2.2 -2.3 Phage protein compare
MCAODC_00870 pcnB -2.2 -5.8 polynucleotide adenylyltransferase PcnB compare
MCAODC_15935 pgmB -2.2 -3.4 beta-phosphoglucomutase compare
MCAODC_04780 tatC -2.2 -2.1 Sec-independent protein translocase subunit TatC compare
MCAODC_09290 ubiK -2.2 -1.3 ubiquinone biosynthesis accessory factor UbiK compare
MCAODC_15860 pspA -2.2 -2.9 phage shock protein PspA compare
MCAODC_02755 hflC -2.2 -3.3 protease modulator HflC compare
MCAODC_26065 cydA -2.1 -1.1 cytochrome ubiquinol oxidase subunit I compare
MCAODC_07520 -2.1 -4.4 NfuA family Fe-S biogenesis protein compare
MCAODC_26315 pgm -2.1 -7.5 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
MCAODC_08640 rbfA -2.1 -2.6 30S ribosome-binding factor RbfA compare
MCAODC_17170 -2.1 -1.4 DUF1627 domain-containing protein compare
MCAODC_21030 gatA -2.1 -1.4 PTS galactitol transporter subunit IIA compare
MCAODC_08895 -2.0 -2.1 YhaC family protein compare
MCAODC_01110 secM -2.0 -1.8 secA translation cis-regulator SecM compare
MCAODC_08130 Thr_trna -2.0 -0.8 tRNA-Thr(ggt) compare
MCAODC_11310 emrR -2.0 -3.6 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
MCAODC_06065 spoT -1.9 -2.2 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
MCAODC_20190 -1.9 -1.1 hypothetical protein compare
MCAODC_17920 mliC -1.9 -1.9 C-type lysozyme inhibitor compare
MCAODC_18560 nudG -1.8 -3.4 CTP pyrophosphohydrolase compare
MCAODC_18815 fadD -1.8 -4.4 long-chain-fatty-acid--CoA ligase FadD compare
MCAODC_05100 trxA -1.8 -3.7 thioredoxin TrxA compare
MCAODC_05390 pstC -1.8 -5.3 phosphate ABC transporter permease PstC compare
MCAODC_05065 rffG -1.8 -8.4 dTDP-glucose 4,6-dehydratase compare
MCAODC_16990 gp18 -1.8 -1.9 phage minor tail protein L compare
MCAODC_19430 -1.8 -1.8 hypothetical protein compare
MCAODC_04060 sthA -1.8 -7.1 Si-specific NAD(P)(+) transhydrogenase compare
MCAODC_23180 -1.8 -2.9 Uncharacterized protein YmdA compare
MCAODC_22030 yciE -1.7 -1.7 Protein YciF compare
MCAODC_25500 espX2 -1.7 -1.1 type III secretion system effector EspX2 compare
MCAODC_05810 escT -1.7 -1.4 type III secretion system LEE export apparatus protein EscT compare
MCAODC_09425 ftsP -1.7 -2.0 cell division protein FtsP compare
MCAODC_14790 -1.7 -1.1 DUF1382 domain-containing protein compare
MCAODC_06315 mtlR -1.7 -5.2 mannitol operon repressor MtlR compare
MCAODC_16630 dosP -1.7 -1.7 oxygen-sensing cyclic-di-GMP phosphodiesterase compare
MCAODC_22495 -1.7 -0.8 CP4-44 prophage putative disrupted hemin or colicin receptor compare
MCAODC_17995 grxD -1.6 -1.6 monothiol glutaredoxin 4 compare
MCAODC_08220 yhdT -1.6 -1.6 Uncharacterized membrane protein YhdT compare
MCAODC_11890 srmB -1.6 -4.4 ATP-dependent RNA helicase SrmB compare
MCAODC_15150 repA2 -1.6 -6.4 Replication regulatory protein repA2 compare
MCAODC_23745 -1.6 -1.6 Membrane protein compare
MCAODC_13885 nuoB -1.6 -4.8 NADH-quinone oxidoreductase subunit NuoB compare
MCAODC_13710 truA -1.6 -2.7 aspartate-semialdehyde dehydrogenase compare
MCAODC_08755 rsmI -1.6 -4.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
MCAODC_19780 yedI -1.5 -4.6 Inner membrane protein YedI compare
MCAODC_18905 rlmA -1.5 -1.8 23S rRNA (guanine(745)-N(1))-methyltransferase compare
MCAODC_11970 shoB -1.5 -1.0 Small toxic protein ShoB compare
MCAODC_21330 -1.5 -1.7 phage tail protein compare
MCAODC_17870 rsxD -1.5 -3.8 electron transport complex subunit RsxD compare
MCAODC_11460 Ile2_trna -1.5 -1.2 tRNA-Ile2(cat) compare
MCAODC_10290 -1.5 -0.8 type III secretion protein compare
MCAODC_03100 proP -1.5 -9.0 glycine betaine/L-proline transporter ProP compare
MCAODC_24235 sodC -1.5 -3.1 superoxide dismutase [Cu-Zn] SodC compare
MCAODC_11230 recA -1.4 -1.3 recombinase RecA compare
MCAODC_14895 ybcM -1.4 -0.8 Uncharacterized HTH-type transcriptional regulator YbcM compare
MCAODC_20605 wcaE -1.4 -1.0 colanic acid biosynthesis glycosyltransferase WcaE compare
MCAODC_26990 Arg_trna -1.4 -2.0 tRNA-Arg(tct) compare
MCAODC_04940 yifL -1.4 -2.1 Uncharacterized lipoprotein YifL compare
MCAODC_17165 -1.4 -2.7 DNA-binding protein compare
MCAODC_10305 fliN -1.4 -3.2 YscQ/HrcQ family type III secretion apparatus protein compare
MCAODC_26020 pal -1.4 -3.1 peptidoglycan-associated lipoprotein Pal compare
MCAODC_09160 Ile2_trna -1.4 -2.3 tRNA-Ile2(cat) compare
MCAODC_27835 proC -1.4 -3.0 pyrroline-5-carboxylate reductase compare
MCAODC_15435 sopA -1.4 -0.9 plasmid-partitioning protein SopA compare
MCAODC_27135 hyi -1.4 -1.5 hydroxypyruvate isomerase compare
MCAODC_00020 rzpD -1.4 -1.2 prophage endopeptidase RzpD compare
MCAODC_25390 mntR -1.4 -2.2 manganese-binding transcriptional regulator MntR compare
MCAODC_06520 cspA -1.4 -0.8 Major cold shock protein compare
MCAODC_13880 nuoA -1.4 -2.3 NADH-quinone oxidoreductase subunit NuoA compare
MCAODC_15750 rnb -1.3 -2.7 exoribonuclease II compare
MCAODC_26910 cusF -1.3 -1.4 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF compare
MCAODC_18890 -1.3 -2.4 UPF0266 membrane protein YobD compare
MCAODC_26140 odhB -1.3 -1.6 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
MCAODC_23540 -1.3 -2.0 IS66 family insertion sequence hypothetical protein compare
MCAODC_16015 ynaI -1.3 -1.5 low conductance mechanosensitive channel YnaI compare
MCAODC_19750 dsrB -1.3 -1.1 protein DsrB compare
MCAODC_05985 -1.3 -0.8 Aec79 compare
MCAODC_07830 yheO -1.3 -1.6 Uncharacterized protein YheO compare
MCAODC_04770 rfaH -1.3 -2.3 transcription/translation regulatory transformer protein RfaH compare
MCAODC_11320 ygaZ -1.3 -3.5 L-valine exporter subunit YgaZ compare
MCAODC_15455 yubF -1.3 -2.8 Uncharacterized protein YubF compare
MCAODC_19070 zwf -1.3 -0.9 glucose-6-phosphate dehydrogenase compare
MCAODC_18440 chbA -1.3 -1.0 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
MCAODC_12345 upp -1.3 -2.8 uracil phosphoribosyltransferase compare
MCAODC_04045 fabR -1.3 -4.2 HTH-type transcriptional repressor FabR compare
MCAODC_06605 Pro_trna -1.3 -1.1 tRNA-Pro(cgg) compare
MCAODC_26105 -1.3 -0.8 DUF4387 domain-containing protein compare
MCAODC_24460 -1.3 -1.9 DUF1627 domain-containing protein compare
MCAODC_18945 proQ -1.3 -2.4 RNA chaperone ProQ compare
MCAODC_17235 -1.2 -1.3 site-specific integrase compare
MCAODC_13240 -1.2 -2.5 Replication protein P compare
MCAODC_19365 yecH -1.2 -1.7 Uncharacterized protein YecH compare
MCAODC_18475 ves -1.2 -1.5 environmental stress-induced protein Ves compare
MCAODC_15635 rluB -1.2 -1.8 23S rRNA pseudouridine(2605) synthase RluB compare
MCAODC_11925 rseC -1.2 -4.6 SoxR-reducing system protein RseC compare
MCAODC_16370 ydcT -1.2 -1.9 Uncharacterized ABC transporter ATP-binding protein YdcT compare
MCAODC_15575 yciE -1.2 -0.8 Protein YciE compare
MCAODC_16570 yddM -1.2 -1.0 HigA family addiction module antitoxin compare
MCAODC_18525 ydjZ -1.2 -2.4 TVP38/TMEM64 family inner membrane protein YdjZ compare
MCAODC_17175 -1.2 -1.9 replication protein compare
MCAODC_06515 hokA -1.2 -1.6 type I toxin-antitoxin system toxin HokA compare
MCAODC_12805 yfeD -1.2 -3.5 Uncharacterized protein YfeD compare
MCAODC_27895 iprA -1.2 -2.4 hydrogen peroxide resistance inhibitor IprA compare
MCAODC_21730 -1.2 -1.8 hypothetical protein compare
MCAODC_18760 yeaQ -1.2 -1.3 UPF0410 protein YeaQ compare
MCAODC_21850 ychF -1.2 -0.7 redox-regulated ATPase YchF compare
MCAODC_15880 pspE -1.2 -1.7 thiosulfate sulfurtransferase PspE compare
MCAODC_17955 sodC -1.2 -1.3 superoxide dismutase [Cu-Zn] SodC compare
MCAODC_05430 -1.2 -1.3 Putative type III effector protein compare
MCAODC_11660 rnfH -1.2 -1.7 RnfH family protein compare
MCAODC_21775 ldrB -1.2 -1.0 Small toxic polypeptide LdrB compare
MCAODC_18270 ppsR -1.2 -1.3 posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR compare
MCAODC_12145 iscR -1.1 -2.8 Fe-S cluster assembly transcriptional regulator IscR compare
MCAODC_17865 rsxC -1.1 -4.0 electron transport complex subunit RsxC compare
MCAODC_08565 greA -1.1 -2.4 transcription elongation factor GreA compare
MCAODC_13020 -1.1 -2.8 hypothetical protein compare
MCAODC_05070 wecC -1.1 -4.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MCAODC_23325 -1.1 -0.8 IS66 transposase compare
MCAODC_21595 kch -1.1 -2.5 voltage-gated potassium channel protein compare
MCAODC_25785 -1.1 -0.9 DUF3927 domain-containing protein compare
MCAODC_21495 -1.1 -1.0 DNA-binding protein compare
MCAODC_02505 ytfP -1.1 -3.4 Gamma-glutamylcyclotransferase family protein YtfP compare
MCAODC_05030 rffM -1.1 -5.1 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
MCAODC_01795 prfC -1.1 -4.4 peptide chain release factor 3 compare
MCAODC_24475 -1.1 -1.5 hypothetical protein compare
MCAODC_18235 -1.1 -1.8 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For phage Phage in Escherichia coli ECRC101

For phage Phage across organisms