Experiment set4S354 for Escherichia coli ECRC101

Compare to:

Control_ECRC101_WM

200 most important genes:

  gene name fitness t score description  
MCAODC_24775 aspC -5.6 -3.9 aspartate transaminase compare
MCAODC_24145 etp -5.4 -7.5 protein-tyrosine-phosphatase Etp compare
MCAODC_09425 ftsP -5.4 -3.7 cell division protein FtsP compare
MCAODC_04165 metF -5.3 -16.3 methylenetetrahydrofolate reductase compare
MCAODC_24855 ihfB -5.1 -3.3 integration host factor subunit beta compare
MCAODC_12290 guaB -5.0 -3.5 IMP dehydrogenase compare
MCAODC_06195 rfaL -5.0 -8.5 O-antigen ligase RfaL compare
MCAODC_09475 metC -4.9 -16.3 cystathionine beta-lyase compare
MCAODC_15590 trpA -4.9 -5.8 tryptophan synthase subunit alpha compare
MCAODC_04175 metB -4.8 -16.8 cystathionine gamma-synthase compare
MCAODC_27060 purK -4.7 -11.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
MCAODC_06175 waaO -4.7 -7.6 lipopolysaccharide 3-alpha-galactosyltransferase compare
MCAODC_10905 cysH -4.6 -9.2 phosphoadenosine phosphosulfate reductase compare
MCAODC_00860 dksA -4.6 -8.8 RNA polymerase-binding protein DksA compare
MCAODC_05085 wecA -4.5 -20.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
MCAODC_01715 serB -4.5 -8.3 phosphoserine phosphatase compare
MCAODC_12295 guaA -4.4 -3.0 glutamine-hydrolyzing GMP synthase compare
MCAODC_06190 rfaB -4.3 -7.0 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
MCAODC_12340 purM -4.3 -7.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
MCAODC_06185 rfaJ -4.3 -7.4 glucosyltransferase compare
MCAODC_16135 hslJ -4.2 -3.6 heat shock protein HslJ compare
MCAODC_20475 perB -4.2 -5.7 GDP-perosamine N-acetyltransferase compare
MCAODC_09980 serA -4.2 -13.4 phosphoglycerate dehydrogenase compare
MCAODC_13655 aroC -4.2 -7.0 chorismate synthase compare
MCAODC_01615 thrC -4.1 -9.0 threonine synthase compare
MCAODC_24120 -4.1 -2.2 Threonine-rich inner membrane protein GfcA compare
MCAODC_21675 rssB -4.1 -4.0 two-component system response regulator RssB compare
MCAODC_20540 -4.1 -14.0 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
MCAODC_24880 serC -4.1 -12.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
MCAODC_11755 pheA -4.0 -12.4 bifunctional chorismate mutase/prephenate dehydratase compare
MCAODC_09775 yggS -4.0 -8.9 pyridoxal phosphate homeostasis protein compare
MCAODC_20525 wzy -3.9 -6.0 O157 family O-antigen polymerase compare
MCAODC_24140 gfcE -3.9 -11.3 Putative polysaccharide export protein GfcE compare
MCAODC_12000 purL -3.9 -19.9 phosphoribosylformylglycinamidine synthase compare
MCAODC_03810 purH -3.9 -15.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
MCAODC_06165 rfaG -3.8 -5.3 Lipopolysaccharide core biosynthesis protein RfaG compare
MCAODC_07645 aroB -3.8 -10.5 3-dehydroquinate synthase compare
MCAODC_21670 galU -3.8 -2.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MCAODC_03775 metA -3.8 -11.3 homoserine O-succinyltransferase compare
MCAODC_24150 etk -3.7 -11.2 tyrosine-protein kinase compare
MCAODC_01245 leuD -3.7 -9.3 3-isopropylmalate dehydratase small subunit compare
MCAODC_24875 aroA -3.7 -13.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
MCAODC_20485 manC2 -3.7 -2.9 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
MCAODC_12460 purC -3.7 -8.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
MCAODC_03815 purD -3.6 -10.4 Phosphoribosylamine--glycine ligase compare
MCAODC_16675 ydeM -3.6 -1.9 anaerobic sulfatase maturase compare
MCAODC_13755 purF -3.5 -14.7 amidophosphoribosyltransferase compare
MCAODC_01240 leuC1 -3.5 -12.1 3-isopropylmalate dehydratase large subunit 1 compare
MCAODC_08085 aroE -3.5 -10.6 shikimate dehydrogenase compare
MCAODC_05150 ilvE -3.5 -13.6 branched-chain-amino-acid transaminase compare
MCAODC_01235 leuB -3.5 -12.6 3-isopropylmalate dehydrogenase compare
MCAODC_23300 -3.5 -1.8 chemotaxis protein compare
MCAODC_08625 nusA -3.4 -2.3 Transcription termination/antitermination protein NusA compare
MCAODC_12720 ptsI -3.3 -2.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
MCAODC_15605 trpD -3.3 -9.4 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
MCAODC_19155 nudB -3.3 -5.3 dihydroneopterin triphosphate diphosphatase compare
MCAODC_10900 cysI -3.3 -9.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
MCAODC_26030 tolA -3.2 -3.1 cell envelope integrity protein TolA compare
MCAODC_15610 trpE -3.2 -11.4 anthranilate synthase component I compare
MCAODC_02550 cysQ -3.2 -8.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MCAODC_15600 trpCF -3.2 -11.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
MCAODC_27020 fimA -3.2 -2.7 type 1 fimbrial major subunit FimA compare
MCAODC_04590 typA -3.2 -10.7 ribosome-dependent GTPase TypA compare
MCAODC_23585 -3.1 -1.7 Membrane protein compare
MCAODC_10975 cysC -3.1 -9.9 Adenylyl-sulfate kinase compare
MCAODC_15595 trpB -3.1 -6.9 tryptophan synthase subunit beta compare
MCAODC_11320 ygaZ -3.1 -9.7 L-valine exporter subunit YgaZ compare
MCAODC_05130 ilvC -3.1 -12.9 ketol-acid reductoisomerase compare
MCAODC_01230 -3.0 -10.4 2-isopropylmalate synthase compare
MCAODC_27055 purE -3.0 -4.7 N5-carboxyaminoimidazole ribonucleotide mutase compare
MCAODC_24130 gfcC -3.0 -6.1 Uncharacterized protein GfcC compare
MCAODC_26020 pal -2.9 -5.2 peptidoglycan-associated lipoprotein Pal compare
MCAODC_23280 yeeS -2.8 -1.5 UPF0758 protein YeeS compare
MCAODC_18215 aroD -2.8 -2.9 3-dehydroquinate dehydratase compare
MCAODC_08475 lptC -2.8 -4.8 LPS export ABC transporter periplasmic protein LptC compare
MCAODC_26145 sucA -2.7 -3.7 2-oxoglutarate dehydrogenase E1 component compare
MCAODC_24125 gfcB -2.7 -4.1 Uncharacterized lipoprotein GfcB compare
MCAODC_01625 thrA -2.7 -14.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
MCAODC_01620 thrB -2.7 -7.7 homoserine kinase compare
MCAODC_13720 accD -2.7 -1.7 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
MCAODC_11750 tyrA -2.6 -12.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
MCAODC_10895 cysJ -2.6 -12.0 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
MCAODC_26040 tolQ -2.6 -1.8 Tol-Pal system protein TolQ compare
MCAODC_05400 pstB -2.5 -1.8 phosphate ABC transporter ATP-binding protein PstB compare
MCAODC_23535 terW -2.5 -2.1 tellurium resistance protein TerW compare
MCAODC_18760 yeaQ -2.5 -3.2 UPF0410 protein YeaQ compare
MCAODC_08220 yhdT -2.5 -2.3 Uncharacterized membrane protein YhdT compare
MCAODC_06205 rfaF -2.5 -1.7 ADP-heptose--LPS heptosyltransferase RfaF compare
MCAODC_00995 acnB -2.5 -2.8 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
MCAODC_05145 ilvD -2.5 -13.0 dihydroxy-acid dehydratase compare
MCAODC_01225 leuL -2.4 -2.7 leu operon leader peptide compare
MCAODC_11310 emrR -2.4 -3.5 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
MCAODC_08610 argG -2.4 -7.8 argininosuccinate synthase compare
MCAODC_22980 rne -2.4 -3.5 ribonuclease E compare
MCAODC_26025 tolB -2.3 -6.4 Tol-Pal system protein TolB compare
MCAODC_15150 repA2 -2.3 -8.4 Replication regulatory protein repA2 compare
MCAODC_12335 purN -2.3 -8.9 phosphoribosylglycinamide formyltransferase compare
MCAODC_13750 cvpA -2.3 -3.9 colicin V production protein compare
MCAODC_03575 plsB -2.3 -1.2 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
MCAODC_27835 proC -2.2 -5.3 pyrroline-5-carboxylate reductase compare
MCAODC_20480 cpsG -2.2 -2.0 colanic acid biosynthesis phosphomannomutase CpsG compare
MCAODC_27555 clpX -2.2 -3.3 ATP-dependent protease ATP-binding subunit ClpX compare
MCAODC_00195 proB -2.2 -4.7 Glutamate 5-kinase compare
MCAODC_06385 yiaW -2.1 -3.0 Inner membrane protein YiaW compare
MCAODC_24965 lrp -2.1 -5.6 leucine-responsive transcriptional regulator Lrp compare
MCAODC_01360 apaH -2.1 -2.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
MCAODC_24135 gfcD -2.1 -8.7 Uncharacterized lipoprotein GfcD compare
MCAODC_20530 wcaA -2.0 -2.0 glycosyl transferase compare
MCAODC_05100 trxA -2.0 -3.1 thioredoxin TrxA compare
MCAODC_06955 pitA -2.0 -3.0 inorganic phosphate transporter PitA compare
MCAODC_02340 argF -2.0 -9.9 ornithine carbamoyltransferase compare
MCAODC_16155 ydbL -2.0 -2.0 DUF1318 domain-containing protein compare
MCAODC_04075 argH -2.0 -9.5 argininosuccinate lyase compare
MCAODC_05140 ilvA -2.0 -8.7 threonine ammonia-lyase, biosynthetic compare
MCAODC_19670 espR4 -2.0 -2.4 T3SS effector leucine-rich repeat protein EspR4 compare
MCAODC_18125 lpp -2.0 -1.0 murein lipoprotein Lpp compare
MCAODC_12960 evgA -1.9 -1.8 acid-sensing system DNA-binding response regulator EvgA compare
MCAODC_19890 -1.9 -1.6 Phage-related protein, tail protein J compare
MCAODC_01630 thrL -1.9 -3.7 thr operon leader peptide compare
MCAODC_17700 mdtI -1.9 -1.7 multidrug/spermidine efflux SMR transporter subunit MdtI compare
MCAODC_11230 recA -1.8 -1.9 recombinase RecA compare
MCAODC_17675 ynfL -1.8 -3.1 Uncharacterized HTH-type transcriptional regulator YnfL compare
MCAODC_01455 carB -1.8 -11.1 carbamoyl-phosphate synthase large subunit compare
MCAODC_04610 glnG -1.8 -7.1 nitrogen regulation protein NR(I) compare
MCAODC_24055 -1.8 -2.2 YccE compare
MCAODC_11640 -1.7 -1.3 DinI-like protein Z3916/ECs3483 compare
MCAODC_24360 -1.7 -1.7 hypothetical protein compare
MCAODC_26830 ybdZ -1.7 -1.7 Enterobactin biosynthesis protein YbdZ compare
MCAODC_11930 lepA -1.7 -2.3 translation elongation factor 4 compare
MCAODC_08405 gltB -1.7 -12.2 glutamate synthase large subunit compare
MCAODC_19490 gpA1 -1.7 -1.7 Phage terminase, large subunit GpA compare
MCAODC_21865 ldcA -1.7 -2.5 muramoyltetrapeptide carboxypeptidase compare
MCAODC_18195 ydiL -1.7 -1.8 Uncharacterized protein YdiL compare
MCAODC_16950 nleG2-3 -1.6 -1.7 DUF1076 domain-containing protein compare
MCAODC_12145 iscR -1.6 -6.0 Fe-S cluster assembly transcriptional regulator IscR compare
MCAODC_08400 gltD -1.6 -8.9 glutamate synthase subunit GltD compare
MCAODC_01460 carA -1.6 -9.0 carbamoyl phosphate synthase small subunit compare
MCAODC_03505 -1.6 -1.4 CPS-53 (KpLE1) prophage protein compare
MCAODC_20965 oRF81 -1.6 -1.6 Uncharacterized protein in GpA 5'region compare
MCAODC_04770 rfaH -1.6 -1.9 transcription/translation regulatory transformer protein RfaH compare
MCAODC_26375 nagB -1.6 -6.8 glucosamine-6-phosphate deaminase compare
MCAODC_05825 grlR -1.6 -1.3 type III secretion system LEE GrlA-binding negative regulator GrlR compare
MCAODC_06170 rfaP -1.6 -3.2 lipopolysaccharide core heptose(I) kinase RfaP compare
MCAODC_13200 -1.5 -3.4 hypothetical protein compare
MCAODC_22415 -1.5 -4.1 DNA primase compare
MCAODC_05830 grlA -1.5 -1.8 type III secretion system LEE transcriptional regulator GrlA compare
MCAODC_04080 -1.5 -8.2 acetylglutamate kinase compare
MCAODC_26420 Met_trna -1.5 -1.9 tRNA-Met(cat) compare
MCAODC_21155 metG -1.5 -2.1 methionine--tRNA ligase compare
MCAODC_08450 ptsN -1.5 -1.7 PTS IIA-like nitrogen regulatory protein PtsN compare
MCAODC_07005 hicB -1.5 -4.6 toxin-antitoxin system HicB family antitoxin compare
MCAODC_26380 nagA -1.5 -5.5 N-acetylglucosamine-6-phosphate deacetylase compare
MCAODC_18600 sIMPL -1.5 -2.9 SIMPL domain-containing protein compare
MCAODC_15435 sopA -1.5 -1.0 plasmid-partitioning protein SopA compare
MCAODC_12730 cysK -1.5 -7.4 cysteine synthase A compare
MCAODC_07710 cysG -1.5 -7.4 siroheme synthase CysG compare
MCAODC_28035 lacI -1.5 -3.8 DNA-binding transcriptional repressor LacI compare
MCAODC_20450 hisF -1.4 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
MCAODC_28545 alpA -1.4 -1.3 AlpA family transcriptional regulator compare
MCAODC_15510 yubL -1.4 -0.5 UPF0401 protein YubL compare
MCAODC_17855 rsxA -1.4 -1.4 electron transport complex subunit RsxA compare
MCAODC_09290 ubiK -1.4 -1.3 ubiquinone biosynthesis accessory factor UbiK compare
MCAODC_23910 -1.4 -1.2 GGDEF domain-containing protein compare
MCAODC_12315 -1.4 -1.3 hypothetical protein compare
MCAODC_20425 hisD -1.3 -4.5 Histidinol dehydrogenase compare
MCAODC_13685 fabB -1.3 -1.8 beta-ketoacyl-ACP synthase I compare
MCAODC_15720 yciH -1.3 -1.1 stress response translation initiation inhibitor YciH compare
MCAODC_11970 shoB -1.3 -1.1 Small toxic protein ShoB compare
MCAODC_15960 ycjF -1.3 -2.9 UPF0283 membrane protein YcjF compare
MCAODC_20375 sbcB -1.3 -3.6 exodeoxyribonuclease I compare
MCAODC_04265 zapB -1.3 -1.3 septal ring assembly protein ZapB compare
MCAODC_24440 -1.3 -2.1 Hok/gef family compare
MCAODC_20430 hisC -1.3 -5.0 histidinol-phosphate transaminase compare
MCAODC_15575 yciE -1.3 -1.0 Protein YciE compare
MCAODC_23895 cadC1 -1.2 -1.3 transcriptional regulator compare
MCAODC_27545 -1.2 -4.0 Lon protease compare
MCAODC_17535 -1.2 -1.2 stability determinant compare
MCAODC_17775 ydgA -1.2 -1.5 Protein YdgA compare
MCAODC_27560 clpP -1.2 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
MCAODC_13595 sixA -1.2 -0.9 phosphohistidine phosphatase SixA compare
MCAODC_20490 wbdQ -1.2 -1.4 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
MCAODC_22745 eCs1768 -1.2 -2.5 phage replisome organizer compare
MCAODC_05945 cesD2 -1.2 -2.4 LcrR family type III secretion system chaperone CesD2 compare
MCAODC_10585 argA -1.2 -6.1 amino-acid N-acetyltransferase compare
MCAODC_05955 escG -1.2 -1.0 type III secretion system LEE needle protein cochaperone EscG compare
MCAODC_10400 -1.2 -1.0 Putative uncharacterized protein YgeF compare
MCAODC_25955 gpmA -1.2 -1.5 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
MCAODC_19750 dsrB -1.2 -0.9 protein DsrB compare
MCAODC_11505 -1.2 -1.1 hypothetical protein compare
MCAODC_26805 fepD -1.2 -4.0 ferrienterobactin ABC transporter permease compare
MCAODC_26140 odhB -1.2 -1.6 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
MCAODC_00190 proA -1.2 -5.8 glutamate-5-semialdehyde dehydrogenase compare
MCAODC_20290 -1.2 -1.9 hypothetical protein compare
MCAODC_04090 argE -1.2 -7.8 acetylornithine deacetylase compare
MCAODC_13950 elaD -1.2 -1.4 ElaD/SseL family deubiquitinase compare
MCAODC_09760 rdgB -1.2 -2.5 XTP/dITP diphosphatase compare
MCAODC_19390 -1.2 -3.6 Putative transmembrane protein compare
MCAODC_26075 -1.2 -2.6 hypothetical protein compare
MCAODC_23610 -1.2 -1.3 Transposase compare
MCAODC_05065 rffG -1.2 -7.5 dTDP-glucose 4,6-dehydratase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in no phage control experiments

For no phage control No phage across organisms