Experiment set4S317 for Escherichia coli ECRC101

Compare to:

WM_TP9

200 most important genes:

  gene name fitness t score description  
MCAODC_01715 serB -6.3 -7.5 phosphoserine phosphatase compare
MCAODC_12460 purC -6.0 -13.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
MCAODC_09980 serA -5.7 -13.4 phosphoglycerate dehydrogenase compare
MCAODC_03810 purH -5.6 -17.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
MCAODC_24775 aspC -5.6 -3.8 aspartate transaminase compare
MCAODC_24880 serC -5.6 -10.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
MCAODC_03815 purD -5.3 -13.0 Phosphoribosylamine--glycine ligase compare
MCAODC_13755 purF -5.3 -16.1 amidophosphoribosyltransferase compare
MCAODC_23535 terW -5.3 -3.3 tellurium resistance protein TerW compare
MCAODC_12000 purL -5.1 -24.9 phosphoribosylformylglycinamidine synthase compare
MCAODC_12290 guaB -5.1 -3.5 IMP dehydrogenase compare
MCAODC_12340 purM -5.0 -9.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
MCAODC_24855 ihfB -5.0 -3.2 integration host factor subunit beta compare
MCAODC_27060 purK -4.8 -10.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
MCAODC_05955 escG -4.8 -1.8 type III secretion system LEE needle protein cochaperone EscG compare
MCAODC_10975 cysC -4.7 -14.2 Adenylyl-sulfate kinase compare
MCAODC_01620 thrB -4.6 -12.3 homoserine kinase compare
MCAODC_27055 purE -4.6 -5.5 N5-carboxyaminoimidazole ribonucleotide mutase compare
MCAODC_12295 guaA -4.5 -3.1 glutamine-hydrolyzing GMP synthase compare
MCAODC_02550 cysQ -4.5 -9.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MCAODC_10905 cysH -4.4 -9.8 phosphoadenosine phosphosulfate reductase compare
MCAODC_19155 nudB -4.3 -4.2 dihydroneopterin triphosphate diphosphatase compare
MCAODC_01615 thrC -4.1 -9.8 threonine synthase compare
MCAODC_21675 rssB -4.0 -3.9 two-component system response regulator RssB compare
MCAODC_10895 cysJ -3.9 -12.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
MCAODC_06065 spoT -3.8 -2.5 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
MCAODC_13950 elaD -3.8 -1.9 ElaD/SseL family deubiquitinase compare
MCAODC_27555 clpX -3.5 -2.4 ATP-dependent protease ATP-binding subunit ClpX compare
MCAODC_12335 purN -3.5 -11.2 phosphoribosylglycinamide formyltransferase compare
MCAODC_00860 dksA -3.4 -9.4 RNA polymerase-binding protein DksA compare
MCAODC_01625 thrA -3.4 -18.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
MCAODC_10900 cysI -3.4 -9.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
MCAODC_12720 ptsI -3.3 -2.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
MCAODC_27560 clpP -3.1 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
MCAODC_21670 galU -2.9 -3.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MCAODC_18255 ydiT -2.9 -2.2 Ferredoxin-like protein YdiT compare
MCAODC_06955 pitA -2.8 -3.3 inorganic phosphate transporter PitA compare
MCAODC_24965 lrp -2.8 -5.8 leucine-responsive transcriptional regulator Lrp compare
MCAODC_06170 rfaP -2.8 -4.4 lipopolysaccharide core heptose(I) kinase RfaP compare
MCAODC_26145 sucA -2.7 -3.2 2-oxoglutarate dehydrogenase E1 component compare
MCAODC_00045 rusA -2.7 -1.8 crossover junction endodeoxyribonuclease RusA compare
MCAODC_20480 cpsG -2.6 -2.4 colanic acid biosynthesis phosphomannomutase CpsG compare
MCAODC_13750 cvpA -2.6 -3.1 colicin V production protein compare
MCAODC_08660 pnp -2.6 -6.6 polyribonucleotide nucleotidyltransferase compare
MCAODC_26805 fepD -2.5 -6.5 ferrienterobactin ABC transporter permease compare
MCAODC_08450 ptsN -2.4 -2.3 PTS IIA-like nitrogen regulatory protein PtsN compare
MCAODC_13655 aroC -2.4 -5.2 chorismate synthase compare
MCAODC_19430 -2.3 -3.1 hypothetical protein compare
MCAODC_05400 pstB -2.3 -1.9 phosphate ABC transporter ATP-binding protein PstB compare
MCAODC_08625 nusA -2.3 -2.3 Transcription termination/antitermination protein NusA compare
MCAODC_11930 lepA -2.3 -2.7 translation elongation factor 4 compare
MCAODC_07680 frlD -2.3 -1.7 fructoselysine 6-kinase compare
MCAODC_04075 argH -2.2 -10.2 argininosuccinate lyase compare
MCAODC_10075 sdhE -2.2 -1.5 FAD assembly factor SdhE compare
MCAODC_21600 clsA -2.1 -3.1 cardiolipin synthase ClsA compare
MCAODC_26020 pal -2.1 -3.6 peptidoglycan-associated lipoprotein Pal compare
MCAODC_07710 cysG -2.1 -8.3 siroheme synthase CysG compare
MCAODC_00995 acnB -2.0 -2.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
MCAODC_26375 nagB -2.0 -6.8 glucosamine-6-phosphate deaminase compare
MCAODC_19750 dsrB -2.0 -1.7 protein DsrB compare
MCAODC_20485 manC2 -2.0 -1.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
MCAODC_10405 -2.0 -1.4 Uncharacterized protein YqeK compare
MCAODC_09775 yggS -2.0 -8.0 pyridoxal phosphate homeostasis protein compare
MCAODC_17175 -1.9 -3.1 replication protein compare
MCAODC_04185 metJ -1.9 -2.3 met regulon transcriptional regulator MetJ compare
MCAODC_06165 rfaG -1.9 -5.3 Lipopolysaccharide core biosynthesis protein RfaG compare
MCAODC_06055 recG -1.9 -9.4 ATP-dependent DNA helicase RecG compare
MCAODC_26810 fepG -1.9 -5.4 iron-enterobactin ABC transporter permease compare
MCAODC_23890 fabG -1.8 -1.3 oxidoreductase compare
MCAODC_05365 -1.8 -1.2 fimbrial chaperone protein compare
MCAODC_19345 yecJ -1.8 -1.8 Uncharacterized protein YecJ compare
MCAODC_10780 mazE -1.8 -1.4 type II toxin-antitoxin system antitoxin MazE compare
MCAODC_19425 -1.8 -2.7 Phage protein compare
MCAODC_26815 fepC -1.8 -2.3 ferrienterobactin ABC transporter ATPase compare
MCAODC_15150 repA2 -1.8 -7.4 Replication regulatory protein repA2 compare
MCAODC_09290 ubiK -1.7 -1.4 ubiquinone biosynthesis accessory factor UbiK compare
MCAODC_24420 ydiL -1.7 -2.0 CPBP family intramembrane metalloprotease compare
MCAODC_26025 tolB -1.7 -4.5 Tol-Pal system protein TolB compare
MCAODC_13925 nuoK -1.7 -2.2 NADH-quinone oxidoreductase subunit NuoK compare
MCAODC_26140 odhB -1.7 -2.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
MCAODC_10335 csgD -1.7 -2.4 LuxR family transcriptional regulator compare
MCAODC_05100 trxA -1.7 -2.0 thioredoxin TrxA compare
MCAODC_10330 flhB -1.7 -1.3 EscU/YscU/HrcU family type III secretion system export apparatus switch protein compare
MCAODC_12495 ypfM -1.7 -2.7 protein YpfM compare
MCAODC_08610 argG -1.6 -6.7 argininosuccinate synthase compare
MCAODC_21585 tonB -1.6 -2.7 TonB system transport protein TonB compare
MCAODC_04480 yiiE -1.6 -1.2 Uncharacterized protein YiiE compare
MCAODC_15165 repA -1.6 -1.6 incFII family plasmid replication initiator RepA compare
MCAODC_11460 Ile2_trna -1.6 -1.3 tRNA-Ile2(cat) compare
MCAODC_08475 lptC -1.6 -1.5 LPS export ABC transporter periplasmic protein LptC compare
MCAODC_19135 -1.6 -2.4 Protein compare
MCAODC_04330 pfkA -1.6 -1.5 6-phosphofructokinase compare
MCAODC_21590 yciI -1.6 -1.7 YciI family protein compare
MCAODC_26795 fepB -1.5 -5.6 ferrienterobactin ABC transporter periplasmic binding protein compare
MCAODC_04590 typA -1.5 -7.9 ribosome-dependent GTPase TypA compare
MCAODC_07005 hicB -1.5 -2.5 toxin-antitoxin system HicB family antitoxin compare
MCAODC_22960 yceD -1.5 -2.7 23S rRNA accumulation protein YceD compare
MCAODC_11485 xerD -1.5 -3.4 site-specific integrase compare
MCAODC_27545 -1.5 -4.2 Lon protease compare
MCAODC_11640 -1.5 -1.2 DinI-like protein Z3916/ECs3483 compare
MCAODC_26835 fes -1.5 -5.3 enterobactin/ferric enterobactin esterase compare
MCAODC_16990 gp18 -1.5 -1.9 phage minor tail protein L compare
MCAODC_12330 ppk1 -1.5 -8.6 polyphosphate kinase 1 compare
MCAODC_13090 -1.5 -2.9 hypothetical protein compare
MCAODC_04600 glnA -1.5 -2.0 glutamate--ammonia ligase compare
MCAODC_22855 ndh -1.5 -3.3 NADH-quinone dehydrogenase compare
MCAODC_07520 -1.4 -3.5 NfuA family Fe-S biogenesis protein compare
MCAODC_06345 yibG -1.4 -2.0 Uncharacterized protein YibG compare
MCAODC_13255 -1.4 -3.9 hypothetical protein compare
MCAODC_00050 ybcO -1.4 -1.4 Putative nuclease YbcO compare
MCAODC_17880 rsxE -1.4 -2.7 electron transport complex subunit RsxE compare
MCAODC_09480 exbB -1.4 -5.1 tol-pal system-associated acyl-CoA thioesterase compare
MCAODC_03610 -1.4 -2.1 sugar ABC transporter compare
MCAODC_10100 recJ -1.4 -5.0 single-stranded-DNA-specific exonuclease RecJ compare
MCAODC_13200 -1.4 -1.5 hypothetical protein compare
MCAODC_09760 rdgB -1.4 -3.1 XTP/dITP diphosphatase compare
MCAODC_15360 -1.3 -1.8 hypothetical protein compare
MCAODC_04610 glnG -1.3 -5.4 nitrogen regulation protein NR(I) compare
MCAODC_08405 gltB -1.3 -10.3 glutamate synthase large subunit compare
MCAODC_04945 cyaY -1.3 -2.7 iron donor protein CyaY compare
MCAODC_19890 -1.3 -1.3 Phage-related protein, tail protein J compare
MCAODC_24530 -1.3 -1.4 DUF1482 domain-containing protein compare
MCAODC_02340 argF -1.3 -7.6 ornithine carbamoyltransferase compare
MCAODC_15335 ehxC -1.3 -1.9 enterohemolysin-activating lysine-acyltransferase EhxC compare
MCAODC_26840 fepA -1.3 -9.0 ferrienterobactin outer membrane transporter compare
MCAODC_06070 rpoZ -1.3 -1.5 DNA-directed RNA polymerase subunit omega compare
MCAODC_04085 argC -1.3 -4.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
MCAODC_17180 -1.3 -2.4 phage replisome organizer compare
MCAODC_07815 slyD -1.3 -4.7 peptidylprolyl isomerase compare
MCAODC_21305 -1.3 -1.2 phage tail tape measure protein compare
MCAODC_16435 yncG -1.3 -1.5 Uncharacterized GST-like protein YncG compare
MCAODC_17675 ynfL -1.3 -1.8 Uncharacterized HTH-type transcriptional regulator YnfL compare
MCAODC_19060 kdgA -1.3 -0.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
MCAODC_26700 rnk -1.3 -2.5 nucleoside diphosphate kinase regulator compare
MCAODC_08400 gltD -1.3 -7.6 glutamate synthase subunit GltD compare
MCAODC_18485 astE -1.3 -3.1 succinylglutamate desuccinylase compare
MCAODC_16020 ynaJ -1.2 -3.4 Uncharacterized protein YnaJ compare
MCAODC_24875 aroA -1.2 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
MCAODC_21375 nu1 -1.2 -1.7 terminase small subunit compare
MCAODC_12730 cysK -1.2 -5.7 cysteine synthase A compare
MCAODC_15430 sopA -1.2 -3.0 plasmid-partitioning protein SopA compare
MCAODC_13350 Arg_trna -1.2 -1.6 tRNA-Arg(tct) compare
MCAODC_23985 -1.2 -2.3 hypothetical protein compare
MCAODC_11230 recA -1.2 -1.3 recombinase RecA compare
MCAODC_16930 ydfJ -1.2 -1.8 Putative transporter YdfJ compare
MCAODC_17875 rsxG -1.2 -1.7 electron transport complex subunit RsxG compare
MCAODC_12270 bamB -1.2 -4.5 outer membrane protein assembly factor BamB compare
MCAODC_04605 glnL -1.2 -4.0 nitrogen regulation protein NR(II) compare
MCAODC_08595 secG -1.2 -0.7 preprotein translocase subunit SecG compare
MCAODC_26960 -1.2 -2.0 Immunity protein of metallopeptidase 4 toxin compare
MCAODC_05820 etgA -1.2 -2.3 type III secretion system LEE muramidase EtgA compare
MCAODC_15595 trpB -1.1 -3.9 tryptophan synthase subunit beta compare
MCAODC_04915 uvrD -1.1 -5.0 DNA helicase II compare
MCAODC_07645 aroB -1.1 -4.6 3-dehydroquinate synthase compare
MCAODC_26350 chiQ -1.1 -2.6 Uncharacterized lipoprotein ChiQ compare
MCAODC_15935 pgmB -1.1 -2.1 beta-phosphoglucomutase compare
MCAODC_24720 elfD -1.1 -1.8 putative fimbrial chaperone protein ElfD compare
MCAODC_01340 surA -1.1 -2.1 peptidylprolyl isomerase SurA compare
MCAODC_20600 wcaF -1.1 -4.9 colanic acid biosynthesis acetyltransferase WcaF compare
MCAODC_25955 gpmA -1.1 -2.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
MCAODC_23910 -1.1 -1.0 GGDEF domain-containing protein compare
MCAODC_20705 terY -1.1 -2.2 Uncharacterized protein YegL compare
MCAODC_16675 ydeM -1.1 -1.0 anaerobic sulfatase maturase compare
MCAODC_04265 zapB -1.1 -1.1 septal ring assembly protein ZapB compare
MCAODC_23745 -1.1 -1.0 Membrane protein compare
MCAODC_23160 mdoG -1.1 -3.6 glucans biosynthesis protein MdoG compare
MCAODC_13120 -1.1 -0.9 sugar acetyltransferase inhibitor compare
MCAODC_23585 -1.1 -0.9 Membrane protein compare
MCAODC_19225 yecT -1.1 -1.1 Uncharacterized protein YecT compare
MCAODC_11910 rseA -1.1 -2.3 anti-sigma-E factor RseA compare
MCAODC_19665 espR3 -1.1 -1.4 Type III secretion system effector espR3 compare
MCAODC_16395 ydcY -1.0 -2.3 Uncharacterized protein YdcY compare
MCAODC_26155 sdhB -1.0 -2.1 succinate dehydrogenase iron-sulfur subunit SdhB compare
MCAODC_16130 ydbJ -1.0 -1.5 Uncharacterized protein YdbJ compare
MCAODC_26705 yldA -1.0 -1.5 Protein YldA compare
MCAODC_00485 rnhA -1.0 -3.0 ribonuclease HI compare
MCAODC_23215 cgsF -1.0 -1.6 curli production assembly/transport protein CsgF compare
MCAODC_04950 cyaA -1.0 -2.6 class I adenylate cyclase compare
MCAODC_11750 tyrA -1.0 -6.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
MCAODC_11890 srmB -1.0 -3.2 ATP-dependent RNA helicase SrmB compare
MCAODC_24440 -1.0 -2.4 Hok/gef family compare
MCAODC_10375 ygeK -1.0 -0.9 Uncharacterized response regulatory protein YgeK compare
MCAODC_20215 ycdB -1.0 -0.9 putative transcriptional regulatory protein YcdB compare
MCAODC_10085 fldB -1.0 -1.8 flavodoxin FldB compare
MCAODC_01455 carB -1.0 -6.7 carbamoyl-phosphate synthase large subunit compare
MCAODC_15550 tra5 -1.0 -2.9 Transposase InsO and inactivated derivatives compare
MCAODC_13150 -1.0 -1.3 DUF1382 domain-containing protein compare
MCAODC_24505 ydfB -1.0 -1.0 Uncharacterized protein YdfB compare
MCAODC_23435 -1.0 -0.8 Oligogalacturonate-specific porin protein KdgM compare
MCAODC_01460 carA -1.0 -4.3 carbamoyl phosphate synthase small subunit compare
MCAODC_21255 -1.0 -1.3 IS4 family transposase compare
MCAODC_06300 -1.0 -2.0 DUF3251 domain-containing protein compare
MCAODC_12145 iscR -1.0 -3.1 Fe-S cluster assembly transcriptional regulator IscR compare
MCAODC_05830 grlA -1.0 -2.8 type III secretion system LEE transcriptional regulator GrlA compare
MCAODC_03675 pgi -0.9 -4.0 glucose-6-phosphate isomerase compare
MCAODC_26030 tolA -0.9 -1.4 cell envelope integrity protein TolA compare
MCAODC_21900 dsbB -0.9 -1.4 disulfide bond formation protein DsbB compare
MCAODC_18205 uhpC -0.9 -1.8 MFS transporter compare
MCAODC_18095 -0.9 -1.1 Putative oxidoreductase Fe-S subunit compare
MCAODC_12840 mntH -0.9 -5.6 Mn(2+) uptake NRAMP transporter MntH compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in phage experiments

For phage Phage across organisms