Experiment set4S207 for Pseudomonas aeruginosa MRSN321

0.001308806342 M Cadmium chloride hemipentahydrate

Group: stress
Media: LB + Cadmium chloride hemipentahydrate (0.001309 M), pH=7
Culturing: Paeruginosa_MRSN321_ML2, 96 deep-well block, Aerobic, at 30 (C), shaken=700 rpm
By: Hans and Ryan on 8/12/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 7 genes in this experiment

For stress Cadmium chloride hemipentahydrate in Pseudomonas aeruginosa MRSN321

For stress Cadmium chloride hemipentahydrate across organisms

SEED Subsystems

Subsystem	#Specific
Biogenesis of c-type cytochromes	1
Biogenesis of cytochrome c oxidases	1
Cobalt-zinc-cadmium resistance	1
Folate Biosynthesis	1
Periplasmic disulfide interchange	1
Queuosine-Archaeosine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Ubiquinone and menaquinone biosynthesis
• Photosynthesis
• Histidine metabolism
• Tyrosine metabolism
• Tryptophan metabolism
• Benzoxazinone biosynthesis
• Naphthalene and anthracene degradation
• Folate biosynthesis
• Porphyrin and chlorophyll metabolism
• Carotenoid biosynthesis - General
• Phenylpropanoid biosynthesis
• Flavonoid biosynthesis
• Anthocyanin biosynthesis
• Alkaloid biosynthesis I
• Insect hormone biosynthesis
• Biosynthesis of alkaloids derived from shikimate pathway

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium)	3	2	1
tetrahydromonapterin biosynthesis	4	3	1
preQ0 biosynthesis	4	2	1
threo-tetrahydrobiopterin biosynthesis	4	2	1
erythro-tetrahydrobiopterin biosynthesis I	4	2	1
NADPH to cytochrome c oxidase via plastocyanin (thylakoid membrane)	4	1	1
photosynthesis light reactions	4	1	1
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I	5	4	1
superpathway of photosynthetic hydrogen production	6	2	1
drosopterin and aurodrosopterin biosynthesis	7	5	1
superpathway of tetrahydrofolate biosynthesis	10	9	1
superpathway of tetrahydrofolate biosynthesis and salvage	12	11	1
oxygenic photosynthesis	17	11	1
ethene biosynthesis V (engineered)	25	18	1
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)	26	19	1
1-butanol autotrophic biosynthesis (engineered)	27	19	1
superpathway of chorismate metabolism	59	45	1