Experiment set4S19 for Pseudomonas sp. RS175

Compare to:

D-Glucuronic acid sodium salt monohydrate carbon source 10 mM

200 most detrimental genes:

  gene name fitness t score description  
PFR28_03257 +1.5 7.7 hypothetical protein compare
PFR28_00807 +1.4 4.5 Flagellar P-ring protein compare
PFR28_03951 +1.3 1.8 hypothetical protein compare
PFR28_01572 +1.3 2.1 hypothetical protein compare
PFR28_00832 +1.2 7.4 Flagellar M-ring protein compare
PFR28_00844 +1.2 2.3 hypothetical protein compare
PFR28_02703 +1.2 1.9 hypothetical protein compare
PFR28_00833 +1.1 5.1 Flagellar motor switch protein FliG compare
PFR28_00835 +1.0 8.4 Flagellum-specific ATP synthase compare
PFR28_01907 +1.0 2.1 hypothetical protein compare
PFR28_00828 +1.0 8.6 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_02403 +1.0 1.0 Na(+)/H(+) antiporter subunit C1 compare
PFR28_04434 +1.0 5.6 Hydrogen peroxide-inducible genes activator compare
PFR28_00831 +1.0 5.6 Flagellar hook-basal body complex protein FliE compare
PFR28_04927 +1.0 3.3 PanD regulatory factor compare
PFR28_00836 +1.0 4.5 Flagellar FliJ protein compare
PFR28_01427 +1.0 2.2 hypothetical protein compare
PFR28_00928 +1.0 1.4 putative sugar transferase EpsL compare
PFR28_00852 +0.9 6.3 RNA polymerase sigma factor FliA compare
PFR28_01322 +0.9 2.4 HTH-type transcriptional regulator LutR compare
PFR28_03778 +0.9 1.2 hypothetical protein compare
PFR28_03900 +0.9 2.1 hypothetical protein compare
PFR28_02830 +0.9 1.8 Putative aminoacrylate hydrolase RutD compare
PFR28_03240 +0.9 1.8 IS110 family transposase ISPfl1 compare
PFR28_01666 +0.9 3.0 hypothetical protein compare
PFR28_01375 +0.9 1.3 hypothetical protein compare
PFR28_00371 +0.9 3.8 hypothetical protein compare
PFR28_05042 +0.9 1.4 hypothetical protein compare
PFR28_03533 +0.9 1.1 DNA-binding protein HU 1 compare
PFR28_03079 +0.9 5.4 Sensor histidine kinase RcsC compare
PFR28_02507 +0.9 0.8 Phosphoglycolate phosphatase compare
PFR28_03386 +0.9 2.2 Major cold shock protein CspA compare
PFR28_01656 +0.8 1.3 hypothetical protein compare
PFR28_03530 +0.8 1.4 hypothetical protein compare
PFR28_02232 +0.8 1.4 hypothetical protein compare
PFR28_01985 +0.8 2.8 hypothetical protein compare
PFR28_02324 +0.8 2.0 hypothetical protein compare
PFR28_02905 +0.8 2.7 hypothetical protein compare
PFR28_00834 +0.8 5.4 hypothetical protein compare
PFR28_05051 +0.8 1.5 hypothetical protein compare
PFR28_00846 +0.8 5.1 Flagellar biosynthetic protein FliQ compare
PFR28_05179 +0.8 1.9 Acetyltransferase compare
PFR28_01888 +0.8 2.4 hypothetical protein compare
PFR28_01136 +0.8 3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PFR28_00849 +0.8 5.5 Flagellar biosynthesis protein FlhA compare
PFR28_00139 +0.8 4.9 HTH-type transcriptional regulator LutR compare
PFR28_00806 +0.8 4.5 Flagellar L-ring protein compare
PFR28_04641 +0.8 2.7 hypothetical protein compare
PFR28_00688 +0.7 0.9 hypothetical protein compare
PFR28_01957 +0.7 1.9 hypothetical protein compare
PFR28_05223 +0.7 3.1 Methyl-accepting chemotaxis protein CtpL compare
PFR28_01583 +0.7 0.9 hypothetical protein compare
PFR28_03254 +0.7 3.8 Flagellar basal body rod protein FlgB compare
PFR28_02841 +0.7 1.0 hypothetical protein compare
PFR28_00805 +0.7 4.6 Flagellar basal-body rod protein FlgG compare
PFR28_03253 +0.7 4.1 Flagellar basal-body rod protein FlgC compare
PFR28_03810 +0.7 2.3 3-dehydroquinate dehydratase 1 compare
PFR28_03073 +0.7 3.2 Putative esterase compare
PFR28_03243 +0.7 3.5 Virulence sensor histidine kinase PhoQ compare
PFR28_03052 +0.7 2.4 hypothetical protein compare
PFR28_00850 +0.7 3.8 Signal recognition particle 54 kDa protein compare
PFR28_04089 +0.7 0.9 PqqA binding protein compare
PFR28_00547 +0.7 2.3 hypothetical protein compare
PFR28_04323 +0.7 3.8 hypothetical protein compare
PFR28_00044 +0.7 2.2 hypothetical protein compare
PFR28_02718 +0.7 2.8 hypothetical protein compare
PFR28_01212 +0.7 1.1 hypothetical protein compare
PFR28_03276 +0.7 2.2 6,7-dimethyl-8-ribityllumazine synthase compare
PFR28_00804 +0.7 3.5 Flagellar basal-body rod protein FlgF compare
PFR28_04958 +0.7 1.1 hypothetical protein compare
PFR28_01173 +0.7 1.2 hypothetical protein compare
PFR28_00841 +0.7 3.8 hypothetical protein compare
PFR28_04611 +0.7 2.0 hypothetical protein compare
PFR28_01997 +0.7 2.6 Inner membrane protein YqaA compare
PFR28_00948 +0.7 1.6 hypothetical protein compare
PFR28_01594 +0.7 1.4 hypothetical protein compare
PFR28_05111 +0.7 3.5 Motility protein B compare
PFR28_01162 +0.7 1.6 hypothetical protein compare
PFR28_01398 +0.7 1.2 hypothetical protein compare
PFR28_00848 +0.7 3.9 Flagellar biosynthetic protein FlhB compare
PFR28_02283 +0.7 1.9 hypothetical protein compare
PFR28_05110 +0.7 3.8 Motility protein A compare
PFR28_00847 +0.7 2.7 Flagellar biosynthetic protein FliR compare
PFR28_01155 +0.7 1.1 hypothetical protein compare
PFR28_01917 +0.6 1.4 Glutamine transport ATP-binding protein GlnQ compare
PFR28_00845 +0.6 2.6 Flagellar biosynthetic protein FliP compare
PFR28_04759 +0.6 2.7 hypothetical protein compare
PFR28_02009 +0.6 1.0 HTH-type transcriptional regulator PgrR compare
PFR28_05056 +0.6 2.5 Ribosomal RNA large subunit methyltransferase J compare
PFR28_01335 +0.6 3.4 hypothetical protein compare
PFR28_05000 +0.6 0.9 Cell division protein FtsN compare
PFR28_03336 +0.6 2.8 hypothetical protein compare
PFR28_02174 +0.6 1.0 RNA pyrophosphohydrolase compare
PFR28_02129 +0.6 2.5 HTH-type transcriptional regulator CdhR compare
PFR28_03232 +0.6 1.4 putative protein YfgD compare
PFR28_05144 +0.6 2.5 hypothetical protein compare
PFR28_04969 +0.6 2.1 Glycine betaine transport ATP-binding protein OpuAA compare
PFR28_02529 +0.6 2.1 hypothetical protein compare
PFR28_00460 +0.6 1.8 hypothetical protein compare
PFR28_03511 +0.6 1.5 HTH-type transcriptional repressor NagR compare
PFR28_04760 +0.6 3.0 hypothetical protein compare
PFR28_01197 +0.6 2.4 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
PFR28_01177 +0.6 2.0 hypothetical protein compare
PFR28_04677 +0.6 1.9 2-hydroxy-6-oxononadienedioate/2-hydroxy-6- oxononatrienedioate hydrolase compare
PFR28_04884 +0.6 3.2 Potassium binding protein Kbp compare
PFR28_00820 +0.6 3.1 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
PFR28_01370 +0.6 5.5 hypothetical protein compare
PFR28_01359 +0.6 0.8 hypothetical protein compare
PFR28_00854 +0.6 2.0 Protein phosphatase CheZ compare
PFR28_02727 +0.6 1.1 Cold shock protein CapB compare
PFR28_04098 +0.6 3.0 hypothetical protein compare
PFR28_00764 +0.6 1.0 hypothetical protein compare
PFR28_00842 +0.6 3.3 Flagellar motor switch protein FliM compare
PFR28_00995 +0.5 1.3 hypothetical protein compare
PFR28_03244 +0.5 2.1 Transcriptional regulatory protein PhoP compare
PFR28_03909 +0.5 1.9 hypothetical protein compare
PFR28_03077 +0.5 4.7 Vitamin B12 transporter BtuB compare
PFR28_03251 +0.5 4.1 Flagellar hook protein FlgE compare
PFR28_01446 +0.5 2.7 hypothetical protein compare
PFR28_01159 +0.5 3.2 hypothetical protein compare
PFR28_02766 +0.5 1.8 Bacitracin export ATP-binding protein BceA compare
PFR28_00941 +0.5 0.7 Potassium-transporting ATPase KdpC subunit compare
PFR28_02008 +0.5 0.8 hypothetical protein compare
PFR28_01723 +0.5 1.5 Response regulator receiver protein CpdR compare
PFR28_01167 +0.5 2.8 Putative prophage major tail sheath protein compare
PFR28_02206 +0.5 0.9 Biopolymer transport protein ExbD compare
PFR28_04344 +0.5 2.2 Exopolyphosphatase compare
PFR28_01459 +0.5 2.5 L-cystine-binding protein FliY compare
PFR28_02540 +0.5 2.5 putative RNA polymerase sigma factor FecI compare
PFR28_04460 +0.5 1.8 hypothetical protein compare
PFR28_00808 +0.5 3.3 hypothetical protein compare
PFR28_03706 +0.5 2.3 hypothetical protein compare
PFR28_04236 +0.5 2.6 Bifunctional protein PyrR compare
PFR28_00455 +0.5 1.9 hypothetical protein compare
PFR28_03623 +0.5 2.2 Ribosomal RNA small subunit methyltransferase C compare
PFR28_01010 +0.5 2.3 Signal transduction histidine-protein kinase/phosphatase DegS compare
PFR28_04921 +0.5 0.7 hypothetical protein compare
PFR28_01587 +0.5 1.0 hypothetical protein compare
PFR28_01166 +0.5 1.3 hypothetical protein compare
PFR28_03425 +0.5 1.4 hypothetical protein compare
PFR28_02596 +0.5 1.8 hypothetical protein compare
PFR28_01431 +0.5 1.3 Chemotaxis protein CheW compare
PFR28_04586 +0.5 1.6 Ribosomal RNA small subunit methyltransferase G compare
PFR28_02872 +0.5 0.6 hypothetical protein compare
PFR28_00555 +0.5 1.7 Inner membrane protein YbaN compare
PFR28_04271 +0.5 1.7 hypothetical protein compare
PFR28_01759 +0.5 2.1 hypothetical protein compare
PFR28_00613 +0.5 0.7 hypothetical protein compare
PFR28_00276 +0.5 1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PFR28_05041 +0.5 1.0 Thioredoxin 2 compare
PFR28_02891 +0.5 1.3 HTH-type transcriptional regulator CdhR compare
PFR28_01925 +0.5 1.3 Vitamin B12 import ATP-binding protein BtuD compare
PFR28_02614 +0.5 1.8 ATP-dependent Clp protease adapter protein ClpS compare
PFR28_01773 +0.5 0.8 hypothetical protein compare
PFR28_04400 +0.5 3.3 Leucine-responsive regulatory protein compare
PFR28_00498 +0.5 1.2 Cold shock protein CapB compare
PFR28_01476 +0.5 2.1 Glycine cleavage system transcriptional activator compare
PFR28_01668 +0.5 1.3 hypothetical protein compare
PFR28_02644 +0.5 1.9 putative hydrolase YcaC compare
PFR28_01008 +0.5 2.5 putative lipid kinase YegS compare
PFR28_00823 +0.5 2.5 Flagellin compare
PFR28_00342 +0.5 1.3 hypothetical protein compare
PFR28_03575 +0.5 1.6 hypothetical protein compare
PFR28_02464 +0.5 1.7 hypothetical protein compare
PFR28_03791 +0.4 2.1 Cyclic diguanosine monophosphate-binding protein compare
PFR28_01836 +0.4 1.3 Transcriptional regulator SlyA compare
PFR28_01174 +0.4 1.4 hypothetical protein compare
PFR28_02683 +0.4 1.2 hypothetical protein compare
PFR28_00068 +0.4 0.4 hypothetical protein compare
PFR28_03903 +0.4 2.1 hypothetical protein compare
PFR28_00838 +0.4 3.5 Sensor histidine kinase RcsC compare
PFR28_03539 +0.4 2.4 Glutamine transport ATP-binding protein GlnQ compare
PFR28_00659 +0.4 1.2 hypothetical protein compare
PFR28_05038 +0.4 1.7 hypothetical protein compare
PFR28_04596 +0.4 2.7 hypothetical protein compare
PFR28_04712 +0.4 0.6 Dodecin compare
PFR28_02818 +0.4 3.7 hypothetical protein compare
PFR28_02962 +0.4 2.2 Putative acyltransferase compare
PFR28_02432 +0.4 1.6 Adaptive-response sensory-kinase SasA compare
PFR28_03517 +0.4 2.3 GTP cyclohydrolase 1 type 2 compare
PFR28_04991 +0.4 2.0 hypothetical protein compare
PFR28_01042 +0.4 0.7 hypothetical protein compare
PFR28_03212 +0.4 1.8 hypothetical protein compare
PFR28_05218 +0.4 0.9 Ribosomal protein L11 methyltransferase compare
PFR28_00840 +0.4 2.6 hypothetical protein compare
PFR28_02452 +0.4 1.2 FK506-binding protein compare
PFR28_04617 +0.4 1.5 hypothetical protein compare
PFR28_04919 +0.4 2.7 hypothetical protein compare
PFR28_00590 +0.4 1.2 hypothetical protein compare
PFR28_02733 +0.4 1.6 Ribokinase compare
PFR28_03202 +0.4 0.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_04331 +0.4 2.9 hypothetical protein compare
PFR28_01891 +0.4 1.2 HTH-type transcriptional regulator GltR compare
PFR28_00639 +0.4 2.2 hypothetical protein compare
PFR28_01227 +0.4 1.0 Trigger factor compare
PFR28_00532 +0.4 0.9 hypothetical protein compare
PFR28_04426 +0.4 1.7 hypothetical protein compare
PFR28_04127 +0.4 1.7 hypothetical protein compare
PFR28_03266 +0.4 1.1 hypothetical protein compare
PFR28_02710 +0.4 2.4 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Glucuronic acid sodium salt monohydrate in Pseudomonas sp. RS175

For carbon source D-Glucuronic acid sodium salt monohydrate across organisms