Experiment set4IT095 for Pseudomonas simiae WCS417

Compare to:

LB with Doxycycline hyclate 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_04385 -5.6 -3.9 organic solvent ABC transporter substrate-binding protein compare
PS417_04390 -4.9 -8.2 toluene tolerance protein compare
PS417_04380 -4.6 -2.3 ABC transporter permease compare
PS417_15095 -4.5 -5.0 hypothetical protein compare
PS417_12595 -4.4 -1.8 transcriptional regulator compare
PS417_20985 -4.3 -3.7 porin compare
PS417_07710 -4.3 -10.4 membrane protein compare
PS417_02720 -4.2 -1.2 TetR family transcriptional regulator compare
PS417_05500 -4.2 -2.7 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_06775 -4.2 -4.2 antibiotic transporter compare
PS417_02255 -4.1 -2.9 lipopolysaccharide kinase compare
PS417_15105 -3.7 -9.0 membrane protein compare
PS417_23025 -3.7 -8.1 murein transglycosylase compare
PS417_23950 -3.6 -3.6 polynucleotide phosphorylase/polyadenylase compare
PS417_02555 -3.5 -16.0 exoribonuclease R compare
PS417_15110 -3.5 -12.7 protein BatD compare
PS417_28070 -3.4 -9.1 phosphate ABC transporter ATP-binding protein compare
PS417_05525 -3.4 -4.7 Fis family transcriptional regulator compare
PS417_15090 -3.4 -3.3 hypothetical protein compare
PS417_05140 -3.3 -2.3 dipicolinate synthase compare
PS417_04375 -3.2 -3.7 ABC transporter ATP-binding protein compare
PS417_05505 -3.1 -8.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_05510 -3.0 -6.8 alpha/beta hydrolase compare
PS417_24155 -2.9 -3.4 ATP-binding protein compare
PS417_23770 -2.8 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_05520 -2.7 -6.6 histidine kinase compare
PS417_13820 -2.7 -8.9 UDP-glucose 6-dehydrogenase compare
PS417_24780 -2.6 -10.5 peptidase C13 compare
PS417_28080 -2.6 -10.8 phosphate ABC transporter permease compare
PS417_28085 -2.6 -9.9 phosphate-binding protein compare
PS417_06770 -2.6 -4.6 multidrug transporter compare
PS417_27605 -2.5 -3.7 hypothetical protein compare
PS417_07510 -2.5 -5.0 aspartyl beta-hydroxylase compare
PS417_27245 -2.4 -4.9 aminotransferase DegT compare
PS417_22825 -2.4 -6.2 hypothetical protein compare
PS417_20130 -2.4 -11.5 dehydrogenase compare
PS417_06370 -2.4 -1.9 cold-shock protein compare
PS417_07470 -2.3 -1.9 hypothetical protein compare
PS417_05515 -2.3 -11.3 hypothetical protein compare
PS417_22450 -2.2 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_15085 -2.2 -3.9 ATPase AAA compare
PS417_22840 -2.1 -1.8 tRNA-Met compare
PS417_13805 -2.1 -9.7 4-amino-4-deoxy-L-arabinose transferase compare
PS417_21515 -2.0 -9.0 transcriptional regulator compare
PS417_13795 -2.0 -4.7 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_10445 -1.9 -2.6 LysR family transcriptional regulator compare
PS417_18355 -1.9 -6.1 DNA-binding protein compare
PS417_23135 -1.9 -2.0 GTP-binding protein compare
PS417_15480 -1.9 -2.3 ABC transporter substrate-binding protein compare
PS417_11900 -1.9 -4.7 conjugal transfer protein TraR compare
PS417_23170 -1.9 -2.0 FeS assembly protein IscX compare
PS417_17945 -1.9 -1.2 hypothetical protein compare
PS417_21510 -1.9 -1.6 histidine kinase compare
PS417_27610 -1.8 -4.6 hypothetical protein compare
PS417_22690 -1.8 -3.9 phosphogluconate dehydratase compare
PS417_02385 -1.8 -1.2 esterase compare
PS417_13790 -1.8 -3.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_23095 -1.8 -1.2 exodeoxyribonuclease compare
PS417_22990 -1.8 -1.6 iron dicitrate transport regulator FecR compare
PS417_18310 -1.7 -1.8 hypothetical protein compare
PS417_09325 -1.7 -2.9 peptidase S41 compare
PS417_28515 -1.7 -2.5 16S rRNA methyltransferase compare
PS417_27865 -1.6 -2.7 LysR family transcriptional regulator compare
PS417_04220 -1.6 -1.4 4-carboxymuconolactone decarboxylase compare
PS417_22445 -1.6 -3.8 ATP-dependent DNA helicase RuvB compare
PS417_06685 -1.6 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_23900 -1.6 -6.4 poly(A) polymerase compare
PS417_10455 -1.6 -2.8 membrane protein compare
PS417_22565 -1.6 -1.3 formyltetrahydrofolate deformylase compare
PS417_12110 -1.6 -1.8 ATP-binding protein compare
PS417_21655 -1.6 -1.3 aspartate kinase compare
PS417_13140 -1.5 -1.1 oxidoreductase compare
PS417_27295 -1.5 -4.0 hypothetical protein compare
PS417_26545 -1.5 -5.2 16S rRNA methyltransferase compare
PS417_23150 -1.5 -2.0 Cro/Cl family transcriptional regulator compare
PS417_18425 -1.5 -0.9 sporulation protein compare
PS417_14960 -1.5 -7.1 ATPase compare
PS417_05695 -1.5 -3.2 transcriptional regulator compare
PS417_08580 -1.4 -4.7 histidine kinase compare
PS417_27595 -1.4 -1.9 recombinase XerC compare
PS417_14065 -1.4 -7.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_11880 -1.4 -1.8 oxidoreductase compare
PS417_16855 -1.4 -1.5 cation:proton antiporter compare
PS417_10425 -1.4 -1.5 hypothetical protein compare
PS417_11175 -1.3 -1.6 AraC family transcriptional regulator compare
PS417_17610 -1.3 -1.2 AsnC family transcriptional regulator compare
PS417_07870 -1.3 -1.5 hypothetical protein compare
PS417_17785 -1.3 -5.4 4-amino-4-deoxy-L-arabinose transferase compare
PS417_16920 -1.3 -3.5 multidrug RND transporter compare
PS417_18130 -1.3 -2.5 ABC transporter substrate-binding protein compare
PS417_06635 -1.3 -0.8 ferredoxin compare
PS417_00810 -1.3 -2.5 RNA polymerase sigma factor compare
PS417_25175 -1.3 -2.6 hypothetical protein compare
PS417_10955 -1.3 -2.8 porin compare
PS417_06245 -1.3 -2.4 zinc metallopeptidase RseP compare
PS417_26605 -1.3 -1.1 malonate decarboxylase subunit beta compare
PS417_10675 -1.3 -1.0 TetR family transcriptional regulator compare
PS417_05560 -1.3 -1.2 ABC transporter compare
PS417_04590 -1.2 -4.1 methyltransferase compare
PS417_15285 -1.2 -0.9 type VI secretion protein compare
PS417_19605 -1.2 -1.4 hypothetical protein compare
PS417_28075 -1.2 -2.5 phosphate ABC transporter permease compare
PS417_21285 -1.2 -2.6 hypothetical protein compare
PS417_15100 -1.2 -1.3 BatB protein compare
PS417_04170 -1.2 -4.1 stringent starvation protein A compare
PS417_12840 -1.2 -2.4 TetR family transcriptional regulator compare
PS417_27205 -1.2 -3.9 adenylate cyclase compare
PS417_27360 -1.2 -2.6 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_00065 -1.2 -1.3 3-methyladenine DNA glycosylase compare
PS417_13145 -1.2 -1.5 50S ribosomal protein L21 compare
PS417_00475 -1.2 -4.0 membrane protein compare
PS417_13785 -1.2 -2.3 hypothetical protein compare
PS417_24835 -1.2 -3.1 hypothetical protein compare
PS417_15885 -1.2 -0.9 GCN5 family acetyltransferase compare
PS417_21095 -1.2 -4.7 membrane protein compare
PS417_21360 -1.2 -1.0 termination factor Rho compare
PS417_18475 -1.2 -2.4 Pyrrolidone-carboxylate peptidase compare
PS417_07845 -1.2 -2.0 transcriptional regulator compare
PS417_26645 -1.2 -1.9 chemotaxis protein compare
PS417_27870 -1.1 -1.9 ATP-dependent DNA helicase RecG compare
PS417_19720 -1.1 -1.0 DNA-binding protein compare
PS417_23155 -1.1 -2.8 pilus assembly protein PilW compare
PS417_27290 -1.1 -1.0 hypothetical protein compare
PS417_26990 -1.1 -1.2 RNA pyrophosphohydrolase compare
PS417_26525 -1.1 -4.7 DEAD/DEAH box helicase compare
PS417_10220 -1.1 -2.2 hypothetical protein compare
PS417_03275 -1.1 -5.9 mammalian cell entry protein conserved
PS417_16490 -1.1 -1.0 cell division protein FtsK compare
PS417_13120 -1.1 -3.6 aspartyl beta-hydroxylase compare
PS417_19270 -1.1 -2.0 hypothetical protein compare
PS417_27715 -1.1 -2.1 Fe-S oxidoreductase compare
PS417_00180 -1.1 -2.3 tryptophan synthase subunit alpha compare
PS417_17855 -1.1 -2.1 major facilitator transporter compare
PS417_03080 -1.1 -2.3 hypothetical protein compare
PS417_09915 -1.1 -1.1 hypothetical protein compare
PS417_11440 -1.1 -1.3 hypothetical protein compare
PS417_09235 -1.1 -0.7 molecular chaperone compare
PS417_26695 -1.1 -0.9 uracil phosphoribosyltransferase compare
PS417_17560 -1.1 -1.9 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_07455 -1.1 -1.5 glutamine amidotransferase compare
PS417_21280 -1.1 -3.4 membrane protein compare
PS417_03970 -1.1 -1.1 1-phosphofructokinase compare
PS417_03270 -1.1 -3.8 paraquat-inducible protein A compare
PS417_17755 -1.0 -1.3 hypothetical protein compare
PS417_02360 -1.0 -1.2 nitrate reductase compare
PS417_02280 -1.0 -0.7 GlcNAc-PI de-N-acetylase compare
PS417_22795 -1.0 -1.6 exclusion suppressor FxsA compare
PS417_19500 -1.0 -2.2 antibiotic synthesis protein MbtH compare
PS417_10405 -1.0 -0.9 filamentous hemagglutinin compare
PS417_06995 -1.0 -1.9 tRNA-Gly compare
PS417_21690 -1.0 -2.6 N-succinylarginine dihydrolase compare
PS417_24605 -1.0 -1.8 thiamine-phosphate pyrophosphorylase compare
PS417_00760 -1.0 -5.4 ShlB family hemolysin secretion/activation protein compare
PS417_16645 -1.0 -3.6 XRE family transcriptional regulator compare
PS417_00385 -1.0 -0.9 Fur family transcriptional regulator compare
PS417_10920 -1.0 -1.8 LysR family transcriptional regulator compare
PS417_01180 -1.0 -3.5 ribosomal protein S6 modification protein compare
PS417_06600 -1.0 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_03740 -1.0 -2.5 peptidylprolyl isomerase compare
PS417_06645 -1.0 -4.8 RNA polymerase-associated protein RapA compare
PS417_02210 -1.0 -3.3 diguanylate cyclase compare
PS417_07565 -1.0 -1.3 hypothetical protein compare
PS417_22775 -1.0 -4.4 histidine kinase compare
PS417_06530 -1.0 -1.8 membrane protein compare
PS417_04450 -1.0 -4.5 hypothetical protein compare
PS417_00485 -1.0 -1.8 ABC transporter permease compare
PS417_22520 -1.0 -1.5 histidine kinase compare
PS417_02510 -1.0 -2.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18440 -1.0 -3.6 hypothetical protein compare
PS417_23775 -1.0 -1.0 exodeoxyribonuclease V subunit beta compare
PS417_09085 -1.0 -0.9 hypothetical protein compare
PS417_08540 -1.0 -2.0 RNA helicase compare
PS417_00185 -1.0 -2.8 tryptophan synthase subunit beta compare
PS417_05985 -1.0 -2.1 chemotaxis protein CheY compare
PS417_15770 -1.0 -0.9 pyridoxine 5'-phosphate oxidase compare
PS417_09300 -1.0 -1.6 peptidylprolyl isomerase compare
PS417_27045 -1.0 -2.1 ATPase compare
PS417_04495 -1.0 -2.3 LITAF-like zinc ribbon domain containing protein compare
PS417_09590 -0.9 -2.2 membrane protein compare
PS417_07985 -0.9 -0.7 AbrB family transcriptional regulator compare
PS417_13075 -0.9 -1.0 hypothetical protein compare
PS417_13620 -0.9 -1.0 thermostable hemolysin compare
PS417_14015 -0.9 -2.0 LysR family transcriptional regulator compare
PS417_15005 -0.9 -1.4 hypothetical protein compare
PS417_24235 -0.9 -1.6 hypothetical protein compare
PS417_26470 -0.9 -1.0 cytochrome C compare
PS417_26900 -0.9 -1.4 L-cystine transporter tcyP compare
PS417_02975 -0.9 -2.2 3-dehydroquinate dehydratase compare
PS417_18635 -0.9 -1.6 4-hydroxybenzoyl-CoA thioesterase compare
PS417_11930 -0.9 -3.2 hypothetical protein compare
PS417_25825 -0.9 -1.6 sulfurtransferase compare
PS417_28230 -0.9 -1.7 transcriptional regulator compare
PS417_28340 -0.9 -1.7 hypothetical protein compare
PS417_03430 -0.9 -2.3 methyltransferase type 11 compare
PS417_00705 -0.9 -0.9 MarR family transcriptional regulator compare
PS417_07770 -0.9 -1.2 hypothetical protein compare
PS417_23080 -0.9 -1.8 sugar ABC transporter ATPase compare
PS417_25005 -0.9 -4.6 molecular chaperone compare
PS417_07140 -0.9 -2.5 peptidase M48 compare
PS417_22595 -0.9 -3.7 hypothetical protein compare


Specific Phenotypes

For 24 genes in this experiment

For stress Doxycycline hyclate in Pseudomonas simiae WCS417

For stress Doxycycline hyclate across organisms