Experiment set4IT094 for Pseudomonas simiae WCS417

Compare to:

LB with Polymyxin B sulfate 0.006 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_13795 -7.5 -7.3 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_13820 -6.3 -6.4 UDP-glucose 6-dehydrogenase compare
PS417_17785 -6.2 -10.4 4-amino-4-deoxy-L-arabinose transferase compare
PS417_12585 -5.9 -9.0 acriflavine resistance protein B compare
PS417_24835 -5.9 -5.2 hypothetical protein compare
PS417_14065 -5.7 -5.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_21515 -5.7 -11.0 transcriptional regulator compare
PS417_13805 -5.6 -12.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_25650 -5.6 -6.6 anhydro-N-acetylmuramic acid kinase compare
PS417_04275 -5.1 -15.1 hypothetical protein compare
PS417_22815 -5.0 -8.4 permease compare
PS417_20650 -5.0 -11.7 hypothetical protein compare
PS417_13800 -4.8 -5.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_06375 -4.8 -1.8 deoxycytidine triphosphate deaminase compare
PS417_27245 -4.7 -6.4 aminotransferase DegT compare
PS417_13790 -4.5 -4.4 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_21125 -4.4 -9.8 phosphoadenosine phosphosulfate reductase compare
PS417_07120 -4.3 -11.4 RNA polymerase sigma-H factor compare
PS417_20635 -4.3 -1.6 ABC transporter ATP-binding protein compare
PS417_08205 -4.3 -4.8 acetyltransferase compare
PS417_08230 -4.0 -3.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08220 -3.8 -2.0 epimerase compare
PS417_07620 -3.7 -3.1 beta-hexosaminidase compare
PS417_08195 -3.7 -11.8 hypothetical protein compare
PS417_08225 -3.6 -6.3 acetolactate synthase compare
PS417_20610 -3.6 -1.8 hypothetical protein compare
PS417_05505 -3.5 -11.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_08245 -3.3 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27285 -3.3 -20.2 Xaa-Pro aminopeptidase compare
PS417_06245 -3.3 -2.9 zinc metallopeptidase RseP compare
PS417_05525 -3.1 -4.1 Fis family transcriptional regulator compare
PS417_13785 -3.0 -3.8 hypothetical protein compare
PS417_24155 -3.0 -4.4 ATP-binding protein compare
PS417_13780 -2.9 -4.7 integrase compare
PS417_21510 -2.9 -2.8 histidine kinase compare
PS417_15100 -2.8 -3.0 BatB protein compare
PS417_08185 -2.8 -7.1 glycosyl transferase compare
PS417_23770 -2.8 -3.2 exodeoxyribonuclease V subunit alpha compare
PS417_14960 -2.7 -11.9 ATPase conserved
PS417_06530 -2.7 -5.3 membrane protein compare
PS417_16515 -2.7 -4.3 Clp protease ClpS compare
PS417_15090 -2.7 -5.9 hypothetical protein compare
PS417_12595 -2.7 -3.5 transcriptional regulator compare
PS417_05510 -2.6 -7.4 alpha/beta hydrolase compare
PS417_25790 -2.6 -2.7 aminoglycoside phosphotransferase compare
PS417_15095 -2.6 -5.1 hypothetical protein compare
PS417_23025 -2.6 -9.0 murein transglycosylase compare
PS417_11825 -2.6 -4.3 transcriptional regulator compare
PS417_05500 -2.5 -3.0 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_05520 -2.5 -7.8 histidine kinase compare
PS417_20645 -2.5 -13.8 membrane protein compare
PS417_08190 -2.5 -14.7 membrane protein compare
PS417_08200 -2.5 -3.6 hypothetical protein compare
PS417_08125 -2.3 -1.8 prephenate dehydratase compare
PS417_15110 -2.2 -8.6 protein BatD compare
PS417_15105 -2.2 -8.6 membrane protein compare
PS417_15085 -2.1 -5.3 ATPase AAA compare
PS417_08180 -2.1 -12.5 glycosyl transferase compare
PS417_16510 -2.1 -4.1 Clp protease ClpX compare
PS417_05100 -2.1 -2.1 RNA polymerase sigma factor compare
PS417_22565 -2.1 -2.2 formyltetrahydrofolate deformylase compare
PS417_26695 -2.0 -1.7 uracil phosphoribosyltransferase compare
PS417_03935 -2.0 -4.4 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_08165 -1.9 -10.4 UDP-glucose 4-epimerase compare
PS417_03560 -1.8 -3.5 GTP-binding protein compare
PS417_17215 -1.8 -4.1 peptidylprolyl isomerase compare
PS417_25645 -1.8 -3.4 peptidase M23 compare
PS417_20660 -1.8 -7.8 hypothetical protein compare
PS417_26990 -1.7 -2.2 RNA pyrophosphohydrolase compare
PS417_23775 -1.7 -2.6 exodeoxyribonuclease V subunit beta compare
PS417_21480 -1.7 -2.4 23S rRNA pseudouridylate synthase compare
PS417_20655 -1.7 -8.7 group 1 glycosyl transferase compare
PS417_23380 -1.6 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_05140 -1.6 -2.7 dipicolinate synthase compare
PS417_02485 -1.5 -4.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_25155 -1.5 -2.4 hypothetical protein compare
PS417_23375 -1.4 -2.4 cytochrome C oxidase compare
PS417_22450 -1.4 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_27435 -1.4 -5.1 polyphosphate kinase compare
PS417_09325 -1.4 -4.3 peptidase S41 compare
PS417_14965 -1.4 -4.7 transcriptional regulator conserved
PS417_02630 -1.4 -2.8 NAD synthetase compare
PS417_12855 -1.3 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20130 -1.3 -8.0 dehydrogenase compare
PS417_11705 -1.3 -4.8 cyclic peptide transporter compare
PS417_13775 -1.3 -3.8 dehydrogenase compare
PS417_06770 -1.3 -3.0 multidrug transporter compare
PS417_23385 -1.3 -6.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_15400 -1.3 -2.1 hypothetical protein compare
PS417_03430 -1.2 -2.0 methyltransferase type 11 compare
PS417_03705 -1.2 -3.5 2-alkenal reductase compare
PS417_27870 -1.2 -4.1 ATP-dependent DNA helicase RecG compare
PS417_04290 -1.2 -3.6 hypothetical protein compare
PS417_15305 -1.2 -1.6 type VI secretion protein compare
PS417_22445 -1.2 -3.8 ATP-dependent DNA helicase RuvB compare
PS417_27195 -1.2 -1.8 N-acetylglutamate synthase compare
PS417_03260 -1.2 -2.6 5S ribosomal RNA compare
PS417_01115 -1.2 -1.6 serine acetyltransferase compare
PS417_23995 -1.1 -1.1 preprotein translocase subunit SecG compare
PS417_02975 -1.1 -2.8 3-dehydroquinate dehydratase compare
PS417_17125 -1.1 -3.8 transcriptional regulator compare
PS417_17780 -1.1 -1.1 Ais protein compare
PS417_22775 -1.1 -5.5 histidine kinase compare
PS417_02895 -1.1 -1.8 precorrin-6Y C5,15-methyltransferase compare
PS417_20665 -1.1 -4.0 hypothetical protein compare
PS417_20030 -1.1 -2.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_20985 -1.1 -2.4 porin compare
PS417_08135 -1.1 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26645 -1.1 -2.1 chemotaxis protein compare
PS417_20670 -1.1 -3.7 glycosyl transferase family 2 compare
PS417_05090 -1.1 -5.5 ferric citrate outer membrane transporter (fecA) (from data) compare
PS417_07165 -1.1 -3.5 dihydrodipicolinate synthase compare
PS417_01605 -1.1 -1.8 phosphoglycerate mutase compare
PS417_19800 -1.0 -2.5 flagellar motor switch protein FliG compare
PS417_22780 -1.0 -2.1 XRE family transcriptional regulator compare
PS417_25120 -1.0 -2.3 capsular biosynthesis protein compare
PS417_05560 -1.0 -2.7 ABC transporter compare
PS417_27040 -1.0 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_24500 -1.0 -3.4 DEAD/DEAH box helicase compare
PS417_26515 -1.0 -3.7 hypothetical protein compare
PS417_05165 -1.0 -2.0 cytosol aminopeptidase compare
PS417_13770 -1.0 -2.6 major facilitator transporter compare
PS417_24745 -0.9 -1.8 gamma-glutamyl phosphate reductase compare
PS417_01210 -0.9 -4.9 hypothetical protein compare
PS417_04375 -0.9 -2.2 ABC transporter ATP-binding protein compare
PS417_07170 -0.9 -3.4 hypothetical protein compare
PS417_23370 -0.9 -2.6 protoheme IX farnesyltransferase compare
PS417_11485 -0.9 -2.1 AraC family transcriptional regulator compare
PS417_26730 -0.9 -0.9 pyrroline-5-carboxylate reductase compare
PS417_10955 -0.9 -2.3 porin compare
PS417_09590 -0.9 -2.5 membrane protein compare
PS417_21425 -0.9 -1.7 4-amino-4-deoxychorismate lyase compare
PS417_16555 -0.9 -1.2 cupin compare
PS417_14280 -0.9 -2.5 hypothetical protein compare
PS417_04385 -0.9 -3.6 organic solvent ABC transporter substrate-binding protein compare
PS417_19350 -0.9 -3.0 GTP cyclohydrolase compare
PS417_13195 -0.8 -2.4 RND transporter MFP subunit compare
PS417_03385 -0.8 -1.1 flavin reductase compare
PS417_01915 -0.8 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_08045 -0.8 -1.5 uracil permease compare
PS417_16005 -0.8 -2.2 ATPase compare
PS417_06945 -0.8 -1.4 membrane protein compare
PS417_27800 -0.8 -4.5 exodeoxyribonuclease III compare
PS417_19190 -0.8 -2.5 BolA family transcriptional regulator compare
PS417_08150 -0.8 -2.4 hypothetical protein compare
PS417_23390 -0.8 -3.9 ubiquinol oxidase subunit II compare
PS417_19520 -0.8 -1.8 transcriptional regulator compare
PS417_03905 -0.8 -1.9 fimbrial protein compare
PS417_09730 -0.8 -2.3 adenylylsulfate kinase compare
PS417_22855 -0.8 -3.6 ssDNA exonuclease RecJ compare
PS417_20705 -0.8 -3.7 cbb3-type cytochrome c oxidase subunit II compare
PS417_17240 -0.8 -2.3 trigger factor compare
PS417_27585 -0.8 -1.6 diaminopimelate epimerase compare
PS417_05470 -0.8 -2.3 DSBA oxidoreductase compare
PS417_18250 -0.7 -1.3 chemotaxis protein compare
PS417_21000 -0.7 -1.5 CrfX protein compare
PS417_16490 -0.7 -1.6 cell division protein FtsK compare
PS417_00175 -0.7 -1.2 CigR compare
PS417_26685 -0.7 -1.7 hypothetical protein compare
PS417_21420 -0.7 -5.6 aminodeoxychorismate lyase compare
PS417_10695 -0.7 -2.5 decarboxylase compare
PS417_23615 -0.7 -1.5 sulfate transporter compare
PS417_05695 -0.7 -3.1 transcriptional regulator compare
PS417_24715 -0.7 -4.4 lytic transglycosylase compare
PS417_19275 -0.7 -0.8 hypothetical protein compare
PS417_10405 -0.7 -1.0 filamentous hemagglutinin compare
PS417_06685 -0.7 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_07000 -0.7 -1.8 hypothetical protein compare
PS417_05815 -0.7 -3.2 recombinase RecA compare
PS417_19605 -0.7 -0.9 hypothetical protein compare
PS417_26120 -0.7 -1.0 hypothetical protein compare
PS417_11480 -0.7 -2.0 hypothetical protein compare
PS417_24680 -0.7 -5.3 murein transglycosylase compare
PS417_14840 -0.7 -1.9 abortive phage infection protein compare
PS417_01850 -0.7 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19625 -0.7 -2.4 histidine kinase compare
PS417_21690 -0.7 -2.5 N-succinylarginine dihydrolase compare
PS417_08170 -0.7 -4.3 capsular biosynthesis protein compare
PS417_13245 -0.7 -1.6 saccharopine dehydrogenase compare
PS417_04050 -0.7 -1.6 peptide ABC transporter ATP-binding protein compare
PS417_04305 -0.7 -0.8 aspartate ammonia-lyase compare
PS417_22520 -0.7 -2.0 histidine kinase compare
PS417_23490 -0.7 -1.3 dihydrofolate reductase compare
PS417_17945 -0.7 -0.9 hypothetical protein compare
PS417_12375 -0.7 -1.0 serine/threonine protein phosphatase compare
PS417_02070 -0.7 -0.7 membrane protein compare
PS417_15540 -0.7 -0.8 NUDIX hydrolase compare
PS417_04390 -0.7 -3.5 toluene tolerance protein compare
PS417_27795 -0.7 -0.8 orotate phosphoribosyltransferase compare
PS417_24885 -0.7 -1.8 transcriptional regulator compare
PS417_02405 -0.7 -2.8 hypothetical protein compare
PS417_24765 -0.7 -3.1 membrane protein compare
PS417_23810 -0.7 -5.2 acetolactate synthase 3 catalytic subunit compare
PS417_04500 -0.7 -1.1 hypothetical protein compare
PS417_05200 -0.7 -2.3 DNA recombination protein RecO compare
PS417_09045 -0.7 -2.3 histidine kinase compare
PS417_25950 -0.7 -2.5 acetylornithine aminotransferase compare
PS417_23205 -0.7 -3.7 transcriptional regulator compare
PS417_07245 -0.7 -1.5 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_27135 -0.7 -0.6 glutamine synthetase compare


Specific Phenotypes

For 8 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms