Experiment set4IT093 for Pseudomonas fluorescens SBW25

Compare to:

N-Acetyl-D-Glucosamine carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS01620 -5.7 -13.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS29885 -5.6 -14.1 LysR family transcriptional regulator compare
PFLU_RS20575 -5.6 -7.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS20580 -5.5 -15.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS24660 -5.4 -20.3 PTS transporter subunit IIBC compare
PFLU_RS24655 -5.3 -11.9 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS27370 -5.2 -17.1 anthranilate phosphoribosyltransferase compare
PFLU_RS01605 -5.2 -9.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS25760 -5.2 -14.2 glucose-6-phosphate isomerase compare
PFLU_RS01610 -5.1 -14.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS23720 -5.1 -3.5 6-phosphogluconolactonase compare
PFLU_RS27365 -5.1 -11.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS25640 -5.0 -19.6 ketol-acid reductoisomerase compare
PFLU_RS20565 -5.0 -21.3 3-isopropylmalate dehydrogenase compare
PFLU_RS01895 -5.0 -5.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS01625 -5.0 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS24650 -4.9 -14.6 SIS domain-containing protein compare
PFLU_RS28535 -4.9 -20.3 dihydroxy-acid dehydratase compare
PFLU_RS24335 -4.8 -18.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS29880 -4.8 -17.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS12975 -4.7 -7.7 DUF934 domain-containing protein compare
PFLU_RS19170 -4.7 -7.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS12980 -4.7 -10.9 nitrite/sulfite reductase compare
PFLU_RS20540 -4.7 -16.3 phosphoribosylanthranilate isomerase compare
PFLU_RS22195 -4.7 -6.3 DEAD/DEAH box helicase compare
PFLU_RS00180 -4.7 -13.0 tryptophan synthase subunit beta compare
PFLU_RS04465 -4.6 -13.0 ATP phosphoribosyltransferase compare
PFLU_RS02590 -4.6 -11.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS29215 -4.6 -16.7 response regulator transcription factor compare
PFLU_RS29875 -4.6 -16.9 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS13540 -4.6 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS24645 -4.5 -16.5 N-acetylglucosamine-6-phosphate deacetylase compare
PFLU_RS24765 -4.5 -21.9 2-isopropylmalate synthase compare
PFLU_RS19165 -4.5 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS28165 -4.5 -16.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS00175 -4.5 -11.9 tryptophan synthase subunit alpha compare
PFLU_RS24640 -4.4 -12.3 GntR family transcriptional regulator compare
PFLU_RS18550 -4.4 -13.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS02490 -4.3 -16.1 phosphoserine phosphatase SerB compare
PFLU_RS01320 -4.3 -13.6 phosphoenolpyruvate carboxykinase compare
PFLU_RS04470 -4.3 -15.9 histidinol dehydrogenase compare
PFLU_RS20510 -4.3 -21.6 O-succinylhomoserine sulfhydrylase compare
PFLU_RS29095 -4.2 -25.0 polyphosphate kinase 1 compare
PFLU_RS18940 -4.2 -12.5 acyl-CoA dehydrogenase compare
PFLU_RS04220 -4.1 -12.9 FadR family transcriptional regulator compare
PFLU_RS25735 -4.1 -15.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04385 -4.1 -8.6 RNase adapter RapZ compare
PFLU_RS01900 -4.0 -10.2 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28390 -4.0 -12.4 methionine biosynthesis protein MetW compare
PFLU_RS28695 -4.0 -7.7 phosphoglycerate dehydrogenase compare
PFLU_RS25360 -4.0 -8.9 glutamate 5-kinase compare
PFLU_RS08155 -4.0 -9.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS23200 -3.9 -2.7 flagellar biosynthesis anti-sigma factor FlgM compare
PFLU_RS27475 -3.9 -16.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS21495 -3.9 -5.9 TlpA family protein disulfide reductase compare
PFLU_RS22740 -3.9 -7.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS06440 -3.9 -2.7 dCTP deaminase compare
PFLU_RS24545 -3.9 -2.7 threonine synthase compare
PFLU_RS15410 -3.8 -6.4 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS23725 -3.8 -18.7 glucose-6-phosphate dehydrogenase compare
PFLU_RS24550 -3.8 -2.6 homoserine dehydrogenase compare
PFLU_RS18505 -3.8 -15.4 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS12580 -3.8 -11.7 MurR/RpiR family transcriptional regulator compare
PFLU_RS20515 -3.8 -6.3 amidophosphoribosyltransferase compare
PFLU_RS18755 -3.8 -11.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS25935 -3.7 -7.9 SsrA-binding protein SmpB compare
PFLU_RS28645 -3.7 -12.5 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS01765 -3.6 -6.7 histidine utilization repressor compare
PFLU_RS30195 -3.6 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
PFLU_RS20290 -3.6 -2.9 integration host factor subunit alpha compare
PFLU_RS28385 -3.6 -14.6 homoserine O-acetyltransferase compare
PFLU_RS08065 -3.5 -11.0 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS06055 -3.5 -3.4 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS15065 -3.5 -4.4 IclR family transcriptional regulator compare
PFLU_RS02565 -3.5 -14.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS27440 -3.4 -8.5 nucleotidyltransferase family protein compare
PFLU_RS25645 -3.4 -5.2 acetolactate synthase small subunit compare
PFLU_RS03765 -3.4 -13.3 sulfate adenylyltransferase subunit CysD compare
PFLU_RS24820 -3.4 -3.2 nucleoside-diphosphate kinase compare
PFLU_RS22595 -3.3 -14.3 OmpA family protein compare
PFLU_RS03770 -3.3 -13.2 sulfate adenylyltransferase subunit CysN compare
PFLU_RS29265 -3.3 -3.2 diaminopimelate decarboxylase compare
PFLU_RS09055 -3.3 -12.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS24565 -3.3 -3.8 50S ribosomal protein L19 compare
PFLU_RS08505 -3.3 -8.8 protease HtpX compare
PFLU_RS02275 -3.3 -3.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS22105 -3.2 -7.9 cysteine synthase CysM compare
PFLU_RS19160 -3.2 -15.2 endopeptidase La compare
PFLU_RS29290 -3.2 -5.0 hypothetical protein compare
PFLU_RS24330 -3.1 -9.8 phosphogluconate dehydratase compare
PFLU_RS22520 -3.1 -7.0 GntR family transcriptional regulator compare
PFLU_RS07805 -3.0 -17.4 transaldolase compare
PFLU_RS03005 -3.0 -6.4 hybrid sensor histidine kinase/response regulator compare
PFLU_RS02525 -3.0 -5.0 small ribosomal subunit biogenesis GTPase RsgA compare
PFLU_RS05650 -3.0 -4.5 glycerol-3-phosphate dehydrogenase compare
PFLU_RS28655 -3.0 -15.6 HAD family hydrolase compare
PFLU_RS02650 -3.0 -2.9 50S ribosomal protein L9 compare
PFLU_RS29785 -2.9 -16.1 D-hexose-6-phosphate mutarotase compare
PFLU_RS25730 -2.9 -14.9 PAS domain S-box protein compare
PFLU_RS08125 -2.9 -4.6 integration host factor subunit beta compare
PFLU_RS11525 -2.9 -6.0 GntR family transcriptional regulator compare
PFLU_RS25590 -2.9 -12.4 exodeoxyribonuclease V subunit beta compare
PFLU_RS25585 -2.9 -7.5 exodeoxyribonuclease V subunit alpha compare
PFLU_RS25875 -2.9 -7.3 transcription elongation factor GreA compare
PFLU_RS18665 -2.8 -8.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS22630 -2.8 -16.0 phosphoenolpyruvate synthase compare
PFLU_RS18530 -2.8 -9.6 DNA translocase FtsK compare
PFLU_RS08445 -2.8 -9.3 MarR family transcriptional regulator compare
PFLU_RS24095 -2.8 -4.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS13475 -2.7 -13.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS24085 -2.6 -7.9 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS25305 -2.6 -10.7 dihydromonapterin reductase compare
PFLU_RS20855 -2.6 -1.9 LysE family translocator compare
PFLU_RS27465 -2.6 -5.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS19015 -2.6 -8.1 anti-sigma factor compare
PFLU_RS25595 -2.6 -8.8 exodeoxyribonuclease V subunit gamma compare
PFLU_RS03015 -2.6 -3.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH compare
PFLU_RS25315 -2.6 -7.0 dihydroneopterin triphosphate 2'-epimerase compare
PFLU_RS22070 -2.6 -3.6 phosphoribosylglycinamide formyltransferase compare
PFLU_RS23310 -2.5 -10.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS28965 -2.5 -10.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS22725 -2.5 -4.1 transcriptional regulator compare
PFLU_RS03970 -2.4 -9.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS20405 -2.4 -5.2 carbon storage regulator CsrA compare
PFLU_RS00415 -2.4 -4.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS13485 -2.4 -14.2 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS10325 -2.3 -10.2 MFS transporter compare
PFLU_RS04660 -2.3 -6.5 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS24710 -2.2 -7.6 alpha,alpha-phosphotrehalase compare
PFLU_RS28665 -2.2 -13.9 threonine ammonia-lyase, biosynthetic compare
PFLU_RS12660 -2.2 -5.4 hypothetical protein compare
PFLU_RS25715 -2.2 -10.1 RNA polymerase-binding protein DksA compare
PFLU_RS18615 -2.1 -4.3 NADH-quinone oxidoreductase subunit A compare
PFLU_RS29430 -2.1 -3.2 50S ribosomal protein L33 compare
PFLU_RS18650 -2.1 -3.7 NADH-quinone oxidoreductase subunit NuoI compare
PFLU_RS25805 -2.1 -3.2 30S ribosome-binding factor RbfA compare
PFLU_RS09575 -2.1 -6.1 FadR family transcriptional regulator compare
PFLU_RS01965 -2.0 -2.9 ATP-dependent protease subunit HslV compare
PFLU_RS24895 -2.0 -3.0 preprotein translocase subunit YajC compare
PFLU_RS29455 -2.0 -3.1 dUTP diphosphatase compare
PFLU_RS07665 -2.0 -4.5 type I DNA topoisomerase compare
PFLU_RS04325 -2.0 -12.7 ribonuclease G compare
PFLU_RS18670 -2.0 -5.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS21740 -2.0 -9.2 Hpt domain-containing protein compare
PFLU_RS20310 -1.9 -1.9 50S ribosomal protein L35 compare
PFLU_RS26735 -1.9 -7.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS07275 -1.9 -6.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS12815 -1.9 -5.3 amino acid deaminase conserved
PFLU_RS20635 -1.9 -1.9 tRNA-Ala compare
PFLU_RS00090 -1.9 -1.3 peptide deformylase compare
PFLU_RS29745 -1.9 -1.5 response regulator compare
PFLU_RS00375 -1.8 -1.3 transcriptional repressor compare
PFLU_RS01960 -1.8 -2.3 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS30165 -1.8 -9.3 ParA family protein compare
PFLU_RS01955 -1.8 -6.5 DUF971 domain-containing protein compare
PFLU_RS18675 -1.8 -7.2 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS18645 -1.8 -4.9 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS04565 -1.8 -1.9 TMEM165/GDT1 family protein compare
PFLU_RS18635 -1.8 -5.5 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS22095 -1.7 -11.0 GTP diphosphokinase compare
PFLU_RS21665 -1.7 -6.1 MinD/ParA family protein compare
PFLU_RS02280 -1.7 -7.9 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS18740 -1.7 -5.7 Dyp-type peroxidase conserved
PFLU_RS05235 -1.7 -7.7 leucyl aminopeptidase compare
PFLU_RS18555 -1.7 -8.5 ATP-dependent Clp protease adapter ClpS compare
PFLU_RS29270 -1.7 -4.1 diaminopimelate epimerase compare
PFLU_RS09305 -1.7 -9.2 hypothetical protein compare
PFLU_RS07725 -1.6 -7.5 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS05665 -1.6 -10.1 aquaporin compare
PFLU_RS18620 -1.6 -7.9 NADH-quinone oxidoreductase subunit B compare
PFLU_RS27380 -1.6 -8.2 anthranilate synthase component I compare
PFLU_RS24205 -1.6 -2.4 DNA binding protein compare
PFLU_RS05660 -1.6 -10.6 glycerol kinase GlpK compare
PFLU_RS18625 -1.6 -7.3 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS01005 -1.6 -1.1 ABC transporter ATP-binding protein compare
PFLU_RS14590 -1.5 -2.5 DNA binding protein compare
PFLU_RS04070 -1.5 -5.4 peptide chain release factor 3 compare
PFLU_RS18640 -1.5 -5.5 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS24025 -1.5 -8.6 quinolinate synthase NadA compare
PFLU_RS28785 -1.5 -8.3 glutamine synthetase compare
PFLU_RS25800 -1.5 -5.6 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS05610 -1.5 -4.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04655 -1.5 -6.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
PFLU_RS28320 -1.5 -4.5 glutathione synthase compare
PFLU_RS05590 -1.5 -5.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS18655 -1.5 -4.2 NADH-quinone oxidoreductase subunit J compare
PFLU_RS05880 -1.4 -6.5 CinA family protein compare
PFLU_RS21300 -1.4 -5.8 cysteine hydrolase compare
PFLU_RS24860 -1.4 -2.5 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS22835 -1.4 -7.2 amidotransferase compare
PFLU_RS18630 -1.4 -2.8 NADH-quinone oxidoreductase subunit NuoE compare
PFLU_RS24090 -1.4 -3.7 Holliday junction branch migration protein RuvA compare
PFLU_RS02670 -1.4 -2.3 hypothetical protein compare
PFLU_RS07755 -1.4 -5.6 heavy metal sensor histidine kinase compare
PFLU_RS19120 -1.4 -2.1 MarR family transcriptional regulator compare
PFLU_RS00435 -1.4 -8.3 PAS domain-containing protein compare
PFLU_RS08380 -1.4 -6.3 3-deoxy-7-phosphoheptulonate synthase compare
PFLU_RS24120 -1.4 -11.3 DNA starvation/stationary phase protection protein conserved
PFLU_RS30160 -1.3 -3.2 ParB/RepB/Spo0J family partition protein compare
PFLU_RS13815 -1.3 -1.3 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source N-Acetyl-D-Glucosamine in Pseudomonas fluorescens SBW25

For carbon source N-Acetyl-D-Glucosamine across organisms