| | gene | name | fitness | t score | description | |
|---|
| b1111 | ycfQ | -7.2 | -2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1130 | phoP | -6.8 | -4.7 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b1855 | lpxM | -6.4 | -3.7 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b2617 | smpA | -6.4 | -2.6 | small membrane protein A (VIMSS) | compare |
| b0436 | tig | -6.3 | -7.5 | trigger factor (NCBI) | compare |
| b0462 | acrB | -6.3 | -12.7 | multidrug efflux system protein (NCBI) | compare |
| b1129 | phoQ | -6.2 | -7.4 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b1677 | lpp | -6.2 | -2.3 | murein lipoprotein (NCBI) | compare |
| b2808 | gcvA | -6.2 | -4.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3627 | rfaI | -6.2 | -10.3 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b0463 | acrA | -6.1 | -8.4 | multidrug efflux system (NCBI) | compare |
| b0178 | hlpA | -6.0 | -2.9 | periplasmic chaperone (NCBI) | compare |
| b3625 | rfaY | -6.0 | -7.2 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1604 | ydgH | -6.0 | -3.5 | hypothetical protein (NCBI) | compare |
| b0957 | ompA | -6.0 | -3.1 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b3628 | rfaB | -5.9 | -9.9 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b3794 | rffM | -5.9 | -4.1 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b2784 | relA | -5.8 | -8.0 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b3784 | rfe | -5.8 | -7.9 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b3198 | kdsC | -5.7 | -3.1 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b3194 | yrbE | -5.7 | -11.5 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0759 | galE | -5.7 | -5.5 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b1531 | marA | -5.7 | -2.4 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b2969 | yghE | -5.6 | -2.9 | predicted secretion pathway protein, L-type protein (pseudogene) (RefSeq) | compare |
| b3632 | rfaQ | -5.6 | -15.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1524 | yneH | -5.5 | -1.0 | predicted glutaminase (NCBI) | compare |
| b2317 | dedA | -5.5 | -4.0 | conserved inner membrane protein (NCBI) | compare |
| b2512 | yfgL | -5.5 | -3.8 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3199 | yrbK | -5.5 | -2.0 | hypothetical protein (NCBI) | compare |
| b3787 | rffD | -5.5 | -9.2 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b3035 | tolC | -5.5 | -7.5 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b4695 | ykgT | -5.4 | -1.7 | no description | compare |
| b3644 | yicC | -5.4 | -5.3 | hypothetical protein (NCBI) | compare |
| b2501 | ppk | -5.4 | -9.0 | polyphosphate kinase (NCBI) | compare |
| b2450 | yffS | -5.4 | -1.7 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b3195 | yrbF | -5.4 | -13.0 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0471 | ybaB | -5.4 | -3.0 | hypothetical protein (NCBI) | compare |
| b3107 | yhaL | -5.3 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3192 | yrbC | -5.3 | -10.8 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3931 | hslU | -5.3 | -18.2 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3193 | yrbD | -5.3 | -10.4 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b0683 | fur | -5.3 | -1.7 | ferric uptake regulator (NCBI) | compare |
| b3163 | nlpI | -5.2 | -3.6 | hypothetical protein (NCBI) | compare |
| b3631 | rfaG | -5.2 | -11.2 | glucosyltransferase I (NCBI) | compare |
| b0617 | citD | -5.1 | -1.9 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b4396 | rob | -5.1 | -11.7 | DNA-binding transcriptional activator (NCBI) | compare |
| b3786 | rffE | -5.1 | -11.8 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b2531 | iscR | -5.0 | -1.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1765 | ydjA | -5.0 | -0.9 | predicted oxidoreductase (NCBI) | compare |
| b3630 | rfaP | -5.0 | -4.9 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1830 | prc | -5.0 | -3.5 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3398 | yrfF | -5.0 | -2.9 | predicted inner membrane protein (NCBI) | compare |
| b0814 | ompX | -4.9 | -5.4 | outer membrane protein X (NCBI) | compare |
| b2174 | b2174 | -4.9 | -8.0 | orf, hypothetical protein (VIMSS) | compare |
| b0866 | ybjQ | -4.9 | -0.9 | hypothetical protein (NCBI) | compare |
| b0014 | dnaK | -4.8 | -2.0 | molecular chaperone DnaK (NCBI) | compare |
| b0737 | tolQ | -4.8 | -3.1 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1236 | galU | -4.8 | -4.6 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b0740 | tolB | -4.7 | -4.6 | translocation protein TolB precursor (NCBI) | compare |
| b2346 | vacJ | -4.7 | -8.2 | predicted lipoprotein (NCBI) | compare |
| b0406 | tgt | -4.7 | -8.0 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b4585 | sroB | -4.7 | -0.9 | Novel sRNA, function unknown (RefSeq) | compare |
| b0739 | tolA | -4.7 | -3.2 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b4529 | ydbJ | -4.7 | -0.9 | hypothetical protein (NCBI) | compare |
| b3082 | ygjM | -4.7 | -1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4443 | gcvB | -4.7 | -1.5 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b0741 | pal | -4.7 | -3.2 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1058 | yceO | -4.7 | -1.2 | hypothetical protein (NCBI) | compare |
| b3005 | exbD | -4.7 | -5.8 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b3842 | rfaH | -4.7 | -3.2 | transcriptional activator RfaH (NCBI) | compare |
| b4480 | hdfR | -4.6 | -5.8 | transcriptional regulator HdfR (NCBI) | compare |
| b1642 | slyA | -4.6 | -1.2 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b0688 | pgm | -4.6 | -3.2 | phosphoglucomutase (NCBI) | compare |
| b2576 | srmB | -4.6 | -3.2 | ATP-dependent RNA helicase (NCBI) | compare |
| b3778 | rep | -4.5 | -8.1 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b2620 | smpB | -4.5 | -2.0 | SsrA-binding protein (NCBI) | compare |
| b1252 | tonB | -4.4 | -4.1 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b0441 | ppiD | -4.4 | -13.2 | peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) | compare |
| b3026 | qseC | -4.4 | -5.2 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b3728 | pstS | -4.4 | -3.0 | phosphate transporter subunit (NCBI) | compare |
| b1358 | ydaT | -4.4 | -1.1 | Rac prophage; predicted protein (NCBI) | compare |
| b0764 | modB | -4.3 | -5.1 | molybdate ABC transporter permease protein (NCBI) | compare |
| b3052 | rfaE | -4.3 | -3.0 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3191 | yrbB | -4.3 | -10.2 | orf, hypothetical protein (VIMSS) | compare |
| b4042 | dgkA | -4.3 | -3.6 | diacylglycerol kinase (NCBI) | compare |
| b0549 | ybcO | -4.2 | -1.6 | DLP12 prophage; predicted protein (NCBI) | compare |
| b3150 | yraP | -4.2 | -7.1 | hypothetical protein (NCBI) | compare |
| b3207 | yrbL | -4.2 | -6.3 | hypothetical protein (NCBI) | compare |
| b0222 | lpcA | -4.2 | -2.3 | phosphoheptose isomerase (NCBI) | compare |
| b4146 | yjeK | -4.1 | -2.9 | predicted lysine aminomutase (NCBI) | compare |
| b0082 | mraW | -4.1 | -4.6 | S-adenosyl-methyltransferase (NCBI) | compare |
| b2363 | yfdT | -4.1 | -3.1 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b3916 | pfkA | -4.1 | -4.9 | 6-phosphofructokinase (NCBI) | compare |
| b4375 | prfC | -4.1 | -8.8 | peptide chain release factor 3 (NCBI) | compare |
| b0145 | dksA | -4.1 | -4.2 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b3229 | sspA | -4.1 | -4.0 | stringent starvation protein A (NCBI) | compare |
| b2906 | visC | -4.1 | -8.7 | hypothetical protein (NCBI) | compare |
| b1144 | ymfJ | -4.1 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0560 | nohB | -4.0 | -2.1 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b1684 | sufA | -3.9 | -1.9 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b3764 | yifE | -3.9 | -5.0 | hypothetical protein (NCBI) | compare |
| b0738 | tolR | -3.8 | -3.7 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0440 | hupB | -3.8 | -4.9 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b1400 | paaY | -3.8 | -2.3 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b3261 | fis | -3.8 | -2.6 | DNA-binding protein Fis (NCBI) | compare |
| b4436 | ryeC | -3.7 | -1.0 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b3726 | pstA | -3.7 | -6.8 | phosphate transporter subunit (NCBI) | compare |
| b2188 | yejM | -3.7 | -8.5 | predicted hydrolase, inner membrane (NCBI) | compare |
| b3621 | rfaC | -3.7 | -3.6 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b4418 | sraB | -3.7 | -0.9 | unknown RNA (NCBI) | compare |
| b4481 | rffT | -3.6 | -6.9 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b3620 | rfaF | -3.6 | -2.5 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b1138 | ymfE | -3.6 | -0.9 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b0059 | hepA | -3.6 | -12.1 | ATP-dependent helicase HepA (NCBI) | compare |
| b3619 | rfaD | -3.6 | -2.5 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3183 | obgE | -3.6 | -1.3 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b4441 | glmY | -3.6 | -0.9 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b0053 | surA | -3.6 | -3.5 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b4416 | rybA | -3.6 | -0.9 | unknown RNA (NCBI) | compare |
| b2567 | rnc | -3.6 | -1.5 | ribonuclease III (NCBI) | compare |
| b2477 | nlpB | -3.5 | -3.4 | lipoprotein-34 (VIMSS) | compare |
| b3463 | ftsE | -3.5 | -4.8 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3725 | pstB | -3.5 | -2.4 | phosphate transporter subunit (NCBI) | compare |
| b1658 | purR | -3.5 | -5.9 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b2181 | yejG | -3.5 | -3.9 | hypothetical protein (NCBI) | compare |
| b3363 | ppiA | -3.4 | -7.7 | peptidyl-prolyl cis-trans isomerase A (rotamase A) (NCBI) | compare |
| b0623 | cspE | -3.4 | -1.5 | cold shock protein E (NCBI) | compare |
| b3029 | ygiN | -3.4 | -2.3 | quinol monooxygenase (NCBI) | compare |
| b1709 | btuD | -3.4 | -0.9 | vitamin B12-transporter ATPase (NCBI) | compare |
| b3791 | rffA | -3.4 | -7.2 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b1693 | aroD | -3.4 | -5.2 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b2553 | glnB | -3.3 | -4.6 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b0630 | lipB | -3.3 | -2.4 | protein of lipoate biosynthesis (VIMSS) | compare |
| b0232 | yafN | -3.3 | -0.9 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1126 | potA | -3.3 | -7.7 | putrescine/spermidine ABC transporter ATPase protein (NCBI) | compare |
| b1712 | ihfA | -3.2 | -2.7 | integration host factor subunit alpha (NCBI) | compare |
| b2330 | yfcB | -3.2 | -2.6 | putative adenine-specific methylase (VIMSS) | compare |
| b1831 | proQ | -3.2 | -2.6 | putative solute/DNA competence effector (NCBI) | compare |
| b0101 | yacG | -3.1 | -2.7 | zinc-binding protein (NCBI) | compare |
| b2494 | yfgC | -3.1 | -6.4 | predicted peptidase (NCBI) | compare |
| b1676 | pykF | -3.1 | -4.3 | pyruvate kinase (NCBI) | compare |
| b4172 | hfq | -3.1 | -1.9 | RNA-binding protein Hfq (NCBI) | compare |
| b1984 | asnW | -3.1 | -0.8 | tRNA-Asn (NCBI) | compare |
| b1286 | rnb | -3.1 | -3.6 | exoribonuclease II (NCBI) | compare |
| b1085 | b1085 | -3.1 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3790 | rffC | -3.1 | -4.4 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b0200 | gmhB | -3.1 | -1.6 | hypothetical protein (NCBI) | compare |
| b4453 | ldrD | -3.1 | -1.5 | toxic polypeptide, small (NCBI) | compare |
| b3870 | glnA | -3.0 | -2.1 | glutamine synthetase (NCBI) | compare |
| b4155 | yjeA | -3.0 | -1.7 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b4699 | fnrS | -3.0 | -0.8 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b4598 | yncL | -3.0 | -1.2 | hypothetical protein (RefSeq) | compare |
| b2572 | rseA | -2.9 | -3.1 | anti-sigma factor (NCBI) | compare |
| b1961 | dcm | -2.9 | -1.3 | DNA cytosine methylase (NCBI) | compare |
| b0627 | tatE | -2.9 | -1.9 | twin arginine translocase protein E (NCBI) | compare |
| b3162 | deaD | -2.8 | -7.7 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b4000 | hupA | -2.8 | -3.2 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b3100 | yqjK | -2.8 | -2.7 | hypothetical protein (NCBI) | compare |
| b1834 | yebT | -2.8 | -4.9 | orf, hypothetical protein (VIMSS) | compare |
| b0890 | ftsK | -2.7 | -10.7 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b3389 | aroB | -2.7 | -7.0 | 3-dehydroquinate synthase (NCBI) | compare |
| b4435 | isrC | -2.7 | -1.3 | unknown RNA (NCBI) | compare |
| b3839 | tatC | -2.7 | -8.2 | TatABCE protein translocation system subunit (NCBI) | compare |
| b0950 | pqiA | -2.7 | -4.6 | paraquat-inducible membrane protein A (NCBI) | compare |
| b1293 | sapB | -2.7 | -1.7 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1123 | potD | -2.7 | -5.1 | spermidine/putrescine ABC transporter periplasmic substrate-binding protein (NCBI) | compare |
| b4648 | ysaC | -2.6 | -2.3 | no description | compare |
| b0092 | ddlB | -2.6 | -4.6 | D-alanylalanine synthetase (NCBI) | compare |
| b4515 | ybgT | -2.6 | -1.0 | hypothetical protein (NCBI) | compare |
| b0430 | cyoC | -2.6 | -3.8 | cytochrome o ubiquinol oxidase subunit III (NCBI) | compare |
| b3386 | rpe | -2.6 | -1.7 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b3237 | argR | -2.6 | -4.9 | arginine repressor (NCBI) | compare |
| b1853 | yebK | -2.6 | -2.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3932 | hslV | -2.6 | -5.9 | ATP-dependent protease peptidase subunit (NCBI) | compare |
| b0677 | nagA | -2.6 | -3.8 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b4025 | pgi | -2.6 | -6.7 | glucose-6-phosphate isomerase (NCBI) | compare |
| b2189 | proL | -2.6 | -1.3 | tRNA-Pro (NCBI) | compare |
| b1591 | b1591 | -2.5 | -1.2 | putative oxidoreductase component (VIMSS) | compare |
| b2518 | ndk | -2.5 | -2.5 | nucleoside diphosphate kinase (NCBI) | compare |
| b3609 | secB | -2.5 | -2.6 | export protein SecB (NCBI) | compare |
| b2064 | asmA | -2.5 | -6.4 | predicted assembly protein (NCBI) | compare |
| b3290 | trkA | -2.5 | -5.0 | potassium transporter peripheral membrane component (NCBI) | compare |
| b4698 | mgrR | -2.5 | -1.9 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b4511 | ybdZ | -2.5 | -1.8 | hypothetical protein (NCBI) | compare |
| b3006 | exbB | -2.5 | -4.9 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b3426 | glpD | -2.4 | -6.0 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b0118 | acnB | -2.4 | -5.8 | aconitate hydratase (NCBI) | compare |
| b2820 | recB | -2.4 | -3.8 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b3636 | rpmG | -2.4 | -1.1 | 50S ribosomal protein L33 (NCBI) | compare |
| b3727 | pstC | -2.4 | -7.5 | phosphate transporter subunit (NCBI) | compare |
| b1811 | yoaH | -2.4 | -2.3 | hypothetical protein (NCBI) | compare |
| b1266 | yciV | -2.4 | -2.1 | hypothetical protein (NCBI) | compare |
| b1960 | vsr | -2.4 | -2.7 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b4484 | cpxP | -2.3 | -3.4 | periplasmic protein combats stress (NCBI) | compare |
| b0783 | moaC | -2.3 | -3.6 | molybdenum cofactor biosynthesis protein C (NCBI) | compare |
| b3281 | aroE | -2.3 | -7.6 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b1124 | potC | -2.3 | -4.1 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b4577 | sgrS | -2.2 | -1.2 | small antisense RNA (NCBI) | compare |
| b0049 | apaH | -2.2 | -4.0 | diadenosinetetraphosphatase (NCBI) | compare |
| b1348 | lar | -2.1 | -2.9 | Rac prophage; restriction alleviation protein (NCBI) | compare |