Experiment set4IT090 for Pseudomonas simiae WCS417

Compare to:

inner cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
PS417_21570 -4.8 -4.8 flagellar basal body rod protein FlgB compare
PS417_21575 -4.6 -7.0 chemotaxis protein compare
PS417_21595 -4.5 -5.2 flagellar biosynthesis protein FlgN compare
PS417_19765 -4.4 -8.7 flagellar hook-length control protein compare
PS417_19800 -4.3 -2.5 flagellar motor switch protein FliG compare
PS417_19885 -4.3 -1.7 flagellar basal body rod protein FlgG compare
PS417_19825 -4.2 -9.5 ATPase AAA compare
PS417_16490 -4.2 -2.5 cell division protein FtsK compare
PS417_06375 -4.2 -1.3 deoxycytidine triphosphate deaminase compare
PS417_19710 -4.1 -13.4 flagellar biosynthesis protein FlhA compare
PS417_21565 -4.1 -3.5 flagellar basal body rod protein FlgC compare
PS417_19860 -3.8 -17.8 flagellar hook protein FlgL compare
PS417_21585 -3.8 -10.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19695 -3.8 -6.1 flagellar biosynthesis sigma factor compare
PS417_22565 -3.8 -1.6 formyltetrahydrofolate deformylase compare
PS417_19740 -3.8 -6.1 flagellar biosynthesis protein flip compare
PS417_19735 -3.7 -5.8 flagellar biosynthesis protein FliQ compare
PS417_19650 -3.7 -5.6 chemotaxis protein CheW compare
PS417_19880 -3.6 -5.1 flagellar basal body L-ring protein compare
PS417_19835 -3.6 -1.5 flagellar biosynthesis protein FliS compare
PS417_19655 -3.5 -4.2 chemotaxis protein CheW compare
PS417_19690 -3.5 -9.3 histidine kinase compare
PS417_24835 -3.5 -5.6 hypothetical protein compare
PS417_21555 -3.5 -11.0 flagellar hook protein FlgE compare
PS417_20090 -3.4 -10.5 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_19665 -3.4 -3.4 flagellar motor protein MotD compare
PS417_24705 -3.4 -3.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_04650 -3.4 -1.4 D-alanine--D-alanine ligase compare
PS417_19850 -3.3 -9.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19840 -3.3 -10.5 flagellar cap protein FliD compare
PS417_27795 -3.3 -1.4 orotate phosphoribosyltransferase compare
PS417_19865 -3.3 -8.9 flagellar hook protein FlgK compare
PS417_05635 -3.1 -5.9 membrane protein compare
PS417_19675 -3.1 -6.5 chemotaxis protein CheY compare
PS417_14065 -3.1 -8.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19795 -3.0 -11.7 flagellar assembly protein FliH compare
PS417_19705 -3.0 -3.3 flagellar biosynthesis regulator FlhF compare
PS417_23950 -3.0 -3.3 polynucleotide phosphorylase/polyadenylase compare
PS417_01915 -2.9 -1.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_20095 -2.9 -15.2 hypothetical protein compare
PS417_20105 -2.8 -18.0 glycosyl transferase compare
PS417_19745 -2.8 -3.4 flagellar assembly protein FliO compare
PS417_27800 -2.8 -8.7 exodeoxyribonuclease III compare
PS417_22450 -2.8 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_20100 -2.7 -13.6 hypothetical protein compare
PS417_05975 -2.7 -1.8 chemotaxis protein CheW compare
PS417_08125 -2.7 -1.4 prephenate dehydratase compare
PS417_07620 -2.7 -2.3 beta-hexosaminidase compare
PS417_19830 -2.7 -2.3 flagellar assembly protein FliT compare
PS417_19730 -2.6 -3.2 flagellar biosynthesis protein FliR compare
PS417_19870 -2.6 -3.3 flagellar rod assembly protein FlgJ compare
PS417_21480 -2.5 -2.5 23S rRNA pseudouridylate synthase compare
PS417_19660 -2.5 -5.6 cobalamin biosynthesis protein CobQ compare
PS417_19790 -2.4 -2.9 ATP synthase compare
PS417_04875 -2.4 -1.9 molybdenum cofactor biosynthesis protein MoaE compare
PS417_19350 -2.3 -4.6 GTP cyclohydrolase compare
PS417_01955 -2.3 -7.3 peptidase compare
PS417_20855 -2.3 -1.9 hypothetical protein compare
PS417_20690 -2.2 -5.2 chemotaxis protein compare
PS417_26990 -2.2 -1.3 RNA pyrophosphohydrolase compare
PS417_02555 -2.2 -12.5 exoribonuclease R compare
PS417_22445 -2.2 -4.3 ATP-dependent DNA helicase RuvB compare
PS417_25650 -2.2 -3.5 anhydro-N-acetylmuramic acid kinase compare
PS417_22815 -2.1 -8.0 permease compare
PS417_19725 -2.1 -2.0 flagellar biosynthesis protein FlhB compare
PS417_23770 -2.1 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_19805 -2.1 -3.5 flagellar M-ring protein FliF compare
PS417_24710 -2.0 -8.1 lipoprotein compare
PS417_18570 -2.0 -4.5 peptidoglycan-binding protein compare
PS417_27870 -1.9 -5.1 ATP-dependent DNA helicase RecG compare
PS417_17645 -1.8 -1.7 RND transporter compare
PS417_07305 -1.8 -3.0 3-beta hydroxysteroid dehydrogenase compare
PS417_15495 -1.8 -1.3 FAD-dependent oxidoreductase compare
PS417_19755 -1.8 -1.7 flagellar motor switch protein FliM compare
PS417_02975 -1.8 -3.1 3-dehydroquinate dehydratase compare
PS417_08135 -1.8 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25390 -1.7 -3.7 MFS transporter compare
PS417_19820 -1.7 -4.1 histidine kinase compare
PS417_19785 -1.7 -2.9 flagellar biogenesis protein compare
PS417_12660 -1.7 -2.0 hypothetical protein compare
PS417_22825 -1.7 -4.3 hypothetical protein compare
PS417_00045 -1.7 -2.1 glycerol acyltransferase compare
PS417_08685 -1.6 -1.8 flagellar hook-length control protein FliK compare
PS417_08945 -1.6 -8.3 heat shock protein 90 compare
PS417_04365 -1.6 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19605 -1.6 -1.7 hypothetical protein compare
PS417_24895 -1.6 -1.4 hypothetical protein compare
PS417_12565 -1.6 -2.3 2-dehydro-3-deoxygluconokinase compare
PS417_18545 -1.6 -4.1 cell division protein compare
PS417_08230 -1.6 -2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21560 -1.5 -2.2 flagellar basal body rod modification protein FlgD compare
PS417_06770 -1.5 -4.8 multidrug transporter compare
PS417_03560 -1.5 -1.8 GTP-binding protein compare
PS417_01580 -1.5 -1.7 imidazole glycerol phosphate synthase compare
PS417_20985 -1.4 -3.1 porin compare
PS417_10025 -1.4 -1.7 bacteriophage lambda NinG family protein compare
PS417_25790 -1.4 -2.9 aminoglycoside phosphotransferase compare
PS417_23775 -1.4 -1.7 exodeoxyribonuclease V subunit beta compare
PS417_24620 -1.4 -2.4 hypothetical protein compare
PS417_00535 -1.3 -1.9 Holliday junction resolvase compare
PS417_24155 -1.3 -2.0 ATP-binding protein compare
PS417_25270 -1.3 -3.5 NrdR family transcriptional regulator compare
PS417_07455 -1.3 -1.9 glutamine amidotransferase compare
PS417_08090 -1.3 -1.4 3-oxoacyl-ACP reductase compare
PS417_10040 -1.3 -1.2 MFS transporter compare
PS417_01620 -1.3 -2.4 preprotein translocase subunit SecB compare
PS417_03145 -1.3 -2.1 acetyl-CoA acetyltransferase compare
PS417_05815 -1.3 -3.5 recombinase RecA compare
PS417_24115 -1.2 -2.0 hypothetical protein compare
PS417_00550 -1.2 -1.1 hypothetical protein compare
PS417_25775 -1.2 -5.4 lipoprotein compare
PS417_00355 -1.2 -2.8 metal ABC transporter permease compare
PS417_17240 -1.2 -2.7 trigger factor compare
PS417_17860 -1.2 -3.1 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_15585 -1.1 -2.3 DNA repair nucleotidyltransferase compare
PS417_26295 -1.1 -2.1 gamma-butyrobetaine dioxygenase compare
PS417_19095 -1.1 -1.2 hypothetical protein compare
PS417_23205 -1.1 -2.3 transcriptional regulator compare
PS417_06465 -1.1 -3.3 transcriptional regulator compare
PS417_12520 -1.1 -2.6 hypothetical protein compare
PS417_20785 -1.1 -4.8 transcriptional regulator compare
PS417_11705 -1.1 -5.6 cyclic peptide transporter compare
PS417_19685 -1.1 -3.9 protein phosphatase compare
PS417_27940 -1.1 -1.1 type VI secretion protein compare
PS417_20665 -1.1 -3.5 hypothetical protein compare
PS417_19275 -1.1 -1.0 hypothetical protein compare
PS417_06500 -1.1 -1.4 hypothetical protein compare
PS417_02980 -1.1 -1.1 chemotaxis protein compare
PS417_19955 -1.1 -1.5 hypothetical protein compare
PS417_20610 -1.1 -1.2 hypothetical protein compare
PS417_14805 -1.1 -1.6 AraC family transcriptional regulator compare
PS417_17805 -1.0 -1.5 microcin B17 processing protein McbC compare
PS417_24230 -1.0 -6.1 ATP-dependent protease compare
PS417_04170 -1.0 -4.1 stringent starvation protein A compare
PS417_26985 -1.0 -3.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_17445 -1.0 -1.2 sulfur oxidation protein SoxZ compare
PS417_03000 -1.0 -3.4 translation initiation factor Sui1 compare
PS417_04380 -1.0 -1.1 ABC transporter permease compare
PS417_26605 -1.0 -1.2 malonate decarboxylase subunit beta compare
PS417_10010 -1.0 -2.2 Replication protein P compare
PS417_09210 -1.0 -1.3 TetR family transcriptional regulator compare
PS417_24615 -1.0 -0.5 hypothetical protein compare
PS417_07575 -1.0 -2.6 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_04390 -1.0 -4.3 toluene tolerance protein compare
PS417_06685 -1.0 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_09325 -1.0 -3.0 peptidase S41 compare
PS417_25225 -0.9 -1.2 MFS transporter compare
PS417_14515 -0.9 -1.4 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_27865 -0.9 -1.2 LysR family transcriptional regulator compare
PS417_14710 -0.9 -1.2 isochorismatase compare
PS417_18630 -0.9 -1.7 tRNA-dihydrouridine synthase C compare
PS417_10425 -0.9 -1.3 hypothetical protein compare
PS417_11585 -0.9 -2.0 LuxR family transcriptional regulator compare
PS417_07710 -0.9 -5.2 membrane protein compare
PS417_06825 -0.9 -1.4 hypothetical protein compare
PS417_18540 -0.9 -1.8 colicin V production CvpA compare
PS417_24675 -0.9 -1.1 lipoyl synthase compare
PS417_10635 -0.9 -3.7 peptidylprolyl isomerase compare
PS417_27065 -0.9 -2.7 hypothetical protein compare
PS417_02880 -0.9 -2.2 copper chaperone compare
PS417_08410 -0.9 -1.7 hypothetical protein compare
PS417_13620 -0.9 -1.0 thermostable hemolysin compare
PS417_04295 -0.9 -4.9 peptidase PmbA compare
PS417_06100 -0.9 -1.4 SAM-dependent methyltransferase compare
PS417_02720 -0.9 -0.8 TetR family transcriptional regulator compare
PS417_08220 -0.9 -0.7 epimerase compare
PS417_20715 -0.9 -2.7 cytochrome Cbb3 compare
PS417_01575 -0.9 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_13010 -0.9 -1.2 alpha/beta hydrolase compare
PS417_19610 -0.9 -1.8 molybdenum cofactor sulfurase compare
PS417_20850 -0.9 -5.0 hypothetical protein compare
PS417_15665 -0.9 -1.2 hypothetical protein compare
PS417_00705 -0.9 -1.1 MarR family transcriptional regulator compare
PS417_23095 -0.9 -0.8 exodeoxyribonuclease compare
PS417_23170 -0.9 -1.3 FeS assembly protein IscX compare
PS417_26805 -0.9 -0.7 cell division protein FtsE compare
PS417_16185 -0.9 -2.1 hypothetical protein compare
PS417_08185 -0.9 -2.8 glycosyl transferase compare
PS417_07820 -0.9 -1.8 transposase compare
PS417_10985 -0.9 -0.7 NADH:flavin oxidoreductase compare
PS417_02210 -0.9 -3.0 diguanylate cyclase compare
PS417_02105 -0.8 -1.6 acyl carrier protein compare
PS417_05165 -0.8 -1.3 cytosol aminopeptidase compare
PS417_19190 -0.8 -1.6 BolA family transcriptional regulator compare
PS417_19515 -0.8 -2.9 histidine kinase compare
PS417_24460 -0.8 -1.4 hypothetical protein compare
PS417_17780 -0.8 -1.1 Ais protein compare
PS417_25765 -0.8 -1.2 transcriptional regulator compare
PS417_12585 -0.8 -3.7 acriflavine resistance protein B compare
PS417_19645 -0.8 -1.3 chemotaxis protein compare
PS417_02225 -0.8 -1.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_04590 -0.8 -3.6 methyltransferase compare
PS417_08190 -0.8 -4.9 membrane protein compare
PS417_19600 -0.8 -0.7 exonuclease compare
PS417_07635 -0.8 -4.7 transcription-repair coupling factor compare
PS417_00375 -0.8 -1.8 membrane protein compare
PS417_01760 -0.8 -1.8 imidazolonepropionase compare
PS417_10535 -0.8 -3.1 hypothetical protein compare
PS417_23160 -0.8 -1.6 50S rRNA methyltransferase compare
PS417_24385 -0.8 -3.4 tRNA (uracil-5-)-methyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For motility Agar in Pseudomonas simiae WCS417

For motility Agar across organisms