Experiment set4IT089 for Pseudomonas simiae WCS417

Compare to:

inner cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
PS417_19765 -6.7 -9.1 flagellar hook-length control protein compare
PS417_02280 -6.5 -3.3 GlcNAc-PI de-N-acetylase compare
PS417_21565 -6.1 -4.2 flagellar basal body rod protein FlgC compare
PS417_24705 -5.1 -5.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_08125 -4.7 -1.5 prephenate dehydratase compare
PS417_27795 -4.6 -1.4 orotate phosphoribosyltransferase compare
PS417_19675 -4.4 -8.1 chemotaxis protein CheY compare
PS417_19885 -4.3 -1.7 flagellar basal body rod protein FlgG compare
PS417_21585 -4.3 -7.7 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19825 -4.2 -8.9 ATPase AAA compare
PS417_24835 -4.2 -3.7 hypothetical protein compare
PS417_06375 -4.2 -1.3 deoxycytidine triphosphate deaminase compare
PS417_21595 -4.1 -4.3 flagellar biosynthesis protein FlgN compare
PS417_19860 -4.1 -16.0 flagellar hook protein FlgL compare
PS417_19695 -4.0 -8.4 flagellar biosynthesis sigma factor compare
PS417_21570 -4.0 -6.5 flagellar basal body rod protein FlgB compare
PS417_21555 -4.0 -10.3 flagellar hook protein FlgE compare
PS417_19730 -3.7 -2.4 flagellar biosynthesis protein FliR compare
PS417_19350 -3.7 -6.9 GTP cyclohydrolase compare
PS417_19880 -3.7 -6.8 flagellar basal body L-ring protein compare
PS417_19710 -3.6 -9.6 flagellar biosynthesis protein FlhA compare
PS417_22450 -3.6 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_19865 -3.5 -9.1 flagellar hook protein FlgK compare
PS417_19690 -3.3 -5.3 histidine kinase compare
PS417_19790 -3.3 -3.2 ATP synthase compare
PS417_05815 -3.2 -6.1 recombinase RecA compare
PS417_20105 -3.2 -19.8 glycosyl transferase compare
PS417_19745 -3.2 -4.0 flagellar assembly protein FliO compare
PS417_19870 -3.2 -4.0 flagellar rod assembly protein FlgJ compare
PS417_14065 -3.2 -9.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19755 -3.1 -1.9 flagellar motor switch protein FliM compare
PS417_22565 -3.1 -1.6 formyltetrahydrofolate deformylase compare
PS417_19740 -3.0 -5.2 flagellar biosynthesis protein flip compare
PS417_19840 -3.0 -9.9 flagellar cap protein FliD compare
PS417_21575 -3.0 -5.2 chemotaxis protein compare
PS417_08730 -3.0 -3.2 cytochrome C compare
PS417_19705 -2.9 -3.2 flagellar biosynthesis regulator FlhF compare
PS417_19795 -2.9 -5.4 flagellar assembly protein FliH compare
PS417_20095 -2.9 -14.5 hypothetical protein compare
PS417_05635 -2.8 -6.4 membrane protein compare
PS417_23770 -2.8 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_20090 -2.8 -8.4 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_19655 -2.8 -6.3 chemotaxis protein CheW compare
PS417_19725 -2.8 -3.5 flagellar biosynthesis protein FlhB compare
PS417_25270 -2.7 -4.3 NrdR family transcriptional regulator compare
PS417_19805 -2.7 -2.7 flagellar M-ring protein FliF compare
PS417_19785 -2.7 -4.2 flagellar biogenesis protein compare
PS417_08135 -2.7 -8.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19850 -2.6 -8.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_05975 -2.6 -1.8 chemotaxis protein CheW compare
PS417_20100 -2.6 -9.4 hypothetical protein compare
PS417_19830 -2.6 -2.3 flagellar assembly protein FliT compare
PS417_22445 -2.5 -3.7 ATP-dependent DNA helicase RuvB compare
PS417_25390 -2.5 -8.4 MFS transporter compare
PS417_04365 -2.4 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19660 -2.4 -4.2 cobalamin biosynthesis protein CobQ compare
PS417_24155 -2.4 -3.2 ATP-binding protein compare
PS417_26900 -2.3 -2.0 L-cystine transporter tcyP compare
PS417_21480 -2.3 -2.0 23S rRNA pseudouridylate synthase compare
PS417_25650 -2.3 -5.6 anhydro-N-acetylmuramic acid kinase compare
PS417_27800 -2.3 -7.0 exodeoxyribonuclease III compare
PS417_19650 -2.3 -5.5 chemotaxis protein CheW compare
PS417_04585 -2.3 -2.1 hypothetical protein compare
PS417_23950 -2.2 -2.3 polynucleotide phosphorylase/polyadenylase compare
PS417_24620 -2.2 -3.0 hypothetical protein compare
PS417_02555 -2.2 -12.1 exoribonuclease R compare
PS417_20855 -2.2 -1.8 hypothetical protein compare
PS417_02740 -2.1 -2.2 LysR family transcriptional regulator compare
PS417_19820 -2.1 -5.2 histidine kinase compare
PS417_20690 -2.1 -5.4 chemotaxis protein compare
PS417_22815 -2.1 -8.6 permease compare
PS417_17945 -2.1 -1.4 hypothetical protein compare
PS417_02975 -2.0 -3.7 3-dehydroquinate dehydratase compare
PS417_19645 -2.0 -2.8 chemotaxis protein compare
PS417_17240 -1.9 -3.8 trigger factor compare
PS417_07575 -1.9 -4.5 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_24710 -1.9 -6.7 lipoprotein compare
PS417_19665 -1.9 -2.4 flagellar motor protein MotD compare
PS417_01145 -1.8 -1.3 taurine transporter ATP-binding subunit compare
PS417_01955 -1.8 -6.9 peptidase compare
PS417_20985 -1.8 -2.6 porin compare
PS417_19735 -1.8 -1.6 flagellar biosynthesis protein FliQ compare
PS417_04170 -1.8 -3.8 stringent starvation protein A compare
PS417_07620 -1.7 -2.1 beta-hexosaminidase compare
PS417_00650 -1.7 -1.0 LysR family transcriptional regulator compare
PS417_22260 -1.7 -2.9 segregation and condensation protein B compare
PS417_18310 -1.7 -2.2 hypothetical protein compare
PS417_22060 -1.7 -1.3 hypothetical protein compare
PS417_01920 -1.7 -1.7 ATP-dependent protease subunit HslV compare
PS417_10405 -1.6 -1.1 filamentous hemagglutinin compare
PS417_27870 -1.6 -2.9 ATP-dependent DNA helicase RecG compare
PS417_18570 -1.6 -4.0 peptidoglycan-binding protein compare
PS417_06730 -1.5 -1.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_01605 -1.5 -1.5 phosphoglycerate mutase compare
PS417_23775 -1.5 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_21630 -1.5 -3.3 magnesium transporter compare
PS417_26815 -1.5 -2.3 peptidase M16 compare
PS417_01620 -1.5 -3.6 preprotein translocase subunit SecB compare
PS417_02225 -1.5 -1.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_15495 -1.5 -0.9 FAD-dependent oxidoreductase compare
PS417_27195 -1.4 -1.5 N-acetylglutamate synthase compare
PS417_08205 -1.4 -2.4 acetyltransferase compare
PS417_03260 -1.4 -2.3 5S ribosomal RNA compare
PS417_12780 -1.4 -3.1 (Fe-S)-binding protein compare
PS417_17490 -1.4 -2.6 ABC transporter ATP-binding protein compare
PS417_08335 -1.4 -1.7 hypothetical protein compare
PS417_11705 -1.4 -4.8 cyclic peptide transporter compare
PS417_13510 -1.3 -1.0 polyketide cyclase compare
PS417_00185 -1.3 -2.5 tryptophan synthase subunit beta compare
PS417_25155 -1.3 -1.8 hypothetical protein compare
PS417_00535 -1.3 -1.6 Holliday junction resolvase compare
PS417_02895 -1.3 -2.2 precorrin-6Y C5,15-methyltransferase compare
PS417_27585 -1.3 -1.6 diaminopimelate epimerase compare
PS417_00825 -1.3 -2.1 recombinase RecF compare
PS417_01915 -1.3 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_25790 -1.3 -2.6 aminoglycoside phosphotransferase compare
PS417_00755 -1.3 -0.8 biofilm PGA synthesis protein PgaD compare
PS417_13055 -1.3 -2.1 aminotransferase compare
PS417_04650 -1.2 -1.0 D-alanine--D-alanine ligase compare
PS417_05235 -1.2 -2.0 peptidase inhibitor I42 compare
PS417_02210 -1.2 -5.2 diguanylate cyclase compare
PS417_05025 -1.2 -1.9 maleylacetoacetate isomerase compare
PS417_20785 -1.2 -4.1 transcriptional regulator compare
PS417_08410 -1.2 -1.7 hypothetical protein compare
PS417_28450 -1.2 -1.7 XRE family transcriptional regulator compare
PS417_04875 -1.2 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_23160 -1.2 -2.1 50S rRNA methyltransferase compare
PS417_20610 -1.2 -1.3 hypothetical protein compare
PS417_26990 -1.2 -1.3 RNA pyrophosphohydrolase compare
PS417_18965 -1.1 -2.2 dienelactone hydrolase compare
PS417_25645 -1.1 -3.4 peptidase M23 compare
PS417_14980 -1.1 -0.8 universal stress protein UspA compare
PS417_19520 -1.1 -2.1 transcriptional regulator compare
PS417_27940 -1.1 -1.4 type VI secretion protein compare
PS417_27595 -1.1 -2.4 recombinase XerC compare
PS417_24500 -1.1 -3.2 DEAD/DEAH box helicase compare
PS417_24125 -1.1 -2.6 hypothetical protein compare
PS417_19685 -1.1 -3.3 protein phosphatase compare
PS417_27665 -1.1 -3.7 diguanylate cyclase compare
PS417_28315 -1.1 -2.4 zinc ABC transporter permease compare
PS417_26470 -1.1 -1.8 cytochrome C compare
PS417_06770 -1.1 -3.9 multidrug transporter compare
PS417_03560 -1.1 -1.5 GTP-binding protein compare
PS417_19835 -1.0 -0.9 flagellar biosynthesis protein FliS compare
PS417_04180 -1.0 -2.6 GntR family transcriptional regulator compare
PS417_08220 -1.0 -0.8 epimerase compare
PS417_19955 -1.0 -1.6 hypothetical protein compare
PS417_01990 -1.0 -3.7 cell division protein compare
PS417_11585 -1.0 -2.4 LuxR family transcriptional regulator compare
PS417_22825 -1.0 -3.9 hypothetical protein compare
PS417_14650 -1.0 -3.2 chemotaxis protein compare
PS417_14455 -1.0 -1.9 polyketide cyclase compare
PS417_00390 -1.0 -3.6 ABC transporter substrate-binding protein compare
PS417_04595 -1.0 -2.0 cell division protein MraZ compare
PS417_14050 -1.0 -2.3 recombinase compare
PS417_24230 -1.0 -4.6 ATP-dependent protease compare
PS417_09460 -1.0 -1.7 alkanesulfonate monooxygenase compare
PS417_15540 -1.0 -1.1 NUDIX hydrolase compare
PS417_14850 -1.0 -1.8 hypothetical protein compare
PS417_15665 -1.0 -1.2 hypothetical protein compare
PS417_00375 -1.0 -2.2 membrane protein compare
PS417_21580 -1.0 -3.6 chemotaxis protein CheW conserved
PS417_07595 -1.0 -2.0 PasA protein compare
PS417_27065 -1.0 -2.2 hypothetical protein compare
PS417_24460 -1.0 -2.0 hypothetical protein compare
PS417_12110 -1.0 -1.4 ATP-binding protein compare
PS417_03930 -1.0 -4.5 thymidine phosphorylase compare
PS417_08620 -1.0 -0.7 hypothetical protein compare
PS417_03005 -1.0 -4.3 arginine decarboxylase compare
PS417_08090 -1.0 -1.1 3-oxoacyl-ACP reductase compare
PS417_02045 -1.0 -1.8 3-oxoacyl-ACP synthase compare
PS417_10025 -1.0 -1.3 bacteriophage lambda NinG family protein compare
PS417_22640 -1.0 -2.7 cytochrome C biogenesis protein CcmE compare
PS417_08845 -1.0 -4.3 hypothetical protein compare
PS417_08225 -1.0 -2.5 acetolactate synthase compare
PS417_01290 -0.9 -1.1 ADP-ribose diphosphatase compare
PS417_24905 -0.9 -2.9 DNA-binding protein compare
PS417_10225 -0.9 -1.8 chitinase compare
PS417_09695 -0.9 -1.3 hydrolase compare
PS417_03875 -0.9 -1.4 membrane protein compare
PS417_14260 -0.9 -1.9 phosphate ABC transporter permease compare
PS417_17345 -0.9 -2.7 hypothetical protein compare
PS417_03935 -0.9 -2.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_16760 -0.9 -2.4 membrane protein compare
PS417_05445 -0.9 -1.0 DNA mismatch repair protein MutT compare
PS417_21655 -0.9 -0.9 aspartate kinase compare
PS417_00085 -0.9 -2.0 16S rRNA methyltransferase compare
PS417_11830 -0.9 -1.6 membrane protein compare
PS417_02695 -0.9 -1.5 protein hupE compare
PS417_19335 -0.9 -1.8 isochorismatase compare
PS417_22330 -0.9 -1.3 arginine deiminase compare
PS417_08190 -0.9 -5.1 membrane protein compare
PS417_22840 -0.9 -1.1 tRNA-Met compare
PS417_07470 -0.9 -1.1 hypothetical protein compare
PS417_20950 -0.9 -2.1 hypothetical protein compare
PS417_09625 -0.9 -2.2 sugar ABC transporter substrate-binding protein compare
PS417_08185 -0.9 -2.7 glycosyl transferase compare
PS417_00945 -0.9 -2.0 sulfate ABC transporter ATP-binding protein compare
PS417_23625 -0.9 -1.2 LysR family transcriptional regulator compare
PS417_10040 -0.9 -0.9 MFS transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility experiments

For motility Agar across organisms