Experiment set4IT089 for Variovorax sp. OAS795
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Group: in plantaMedia: + Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Culturing: Variovorax_OAS795_ML2, pot, at 26 (C), (Solid)
By: Marta on 3-Jun-21
Specific Phenotypes
For 14 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Oxidative phosphorylation
- Purine metabolism
- Pyrimidine metabolism
- Nicotinate and nicotinamide metabolism
- Biosynthesis of alkaloids derived from histidine and purine
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| NAD salvage pathway III (to nicotinamide riboside) | 3 | 2 | 1 |
| oxalate degradation II | 3 | 2 | 1 |
| UTP and CTP dephosphorylation I | 7 | 5 | 2 |
| purine nucleotides degradation II (aerobic) | 11 | 8 | 3 |
| guanosine nucleotides degradation II | 4 | 4 | 1 |
| adenosine nucleotides degradation I | 8 | 7 | 2 |
| purine nucleotides degradation I (plants) | 12 | 10 | 3 |
| guanosine nucleotides degradation I | 4 | 3 | 1 |
| guanosine nucleotides degradation III | 4 | 3 | 1 |
| inosine 5'-phosphate degradation | 4 | 3 | 1 |
| adenosine nucleotides degradation II | 5 | 4 | 1 |
| superpathway of guanosine nucleotides degradation (plants) | 6 | 5 | 1 |
| superpathway of purines degradation in plants | 18 | 12 | 3 |
| benzoyl-CoA degradation I (aerobic) | 7 | 6 | 1 |
| ureide biosynthesis | 7 | 5 | 1 |
| glyphosate degradation III | 7 | 1 | 1 |
| (aminomethyl)phosphonate degradation | 8 | 1 | 1 |
| tunicamycin biosynthesis | 9 | 1 | 1 |
| NAD salvage (plants) | 11 | 6 | 1 |