Experiment set4IT088 for Pseudomonas simiae WCS417

Compare to:

inner cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
PS417_21565 -6.0 -4.1 flagellar basal body rod protein FlgC compare
PS417_19880 -5.9 -8.1 flagellar basal body L-ring protein compare
PS417_19765 -5.7 -8.9 flagellar hook-length control protein compare
PS417_22565 -5.0 -1.6 formyltetrahydrofolate deformylase compare
PS417_21595 -4.8 -5.2 flagellar biosynthesis protein FlgN compare
PS417_08125 -4.6 -1.4 prephenate dehydratase compare
PS417_19785 -4.5 -3.6 flagellar biogenesis protein compare
PS417_19865 -4.5 -10.8 flagellar hook protein FlgK compare
PS417_19695 -4.4 -7.5 flagellar biosynthesis sigma factor compare
PS417_19860 -4.4 -15.9 flagellar hook protein FlgL compare
PS417_19825 -4.4 -8.1 ATPase AAA compare
PS417_21585 -4.2 -9.4 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_06375 -4.0 -1.2 deoxycytidine triphosphate deaminase compare
PS417_05975 -4.0 -1.7 chemotaxis protein CheW compare
PS417_19840 -3.9 -9.7 flagellar cap protein FliD compare
PS417_23775 -3.8 -2.9 exodeoxyribonuclease V subunit beta compare
PS417_19885 -3.7 -2.1 flagellar basal body rod protein FlgG compare
PS417_20090 -3.7 -12.4 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_19665 -3.7 -4.5 flagellar motor protein MotD compare
PS417_19710 -3.6 -11.9 flagellar biosynthesis protein FlhA compare
PS417_19795 -3.5 -7.1 flagellar assembly protein FliH compare
PS417_19850 -3.5 -7.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19690 -3.5 -3.7 histidine kinase compare
PS417_23950 -3.5 -2.3 polynucleotide phosphorylase/polyadenylase compare
PS417_14065 -3.4 -10.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22450 -3.4 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_01580 -3.4 -1.3 imidazole glycerol phosphate synthase compare
PS417_19790 -3.4 -3.1 ATP synthase compare
PS417_20105 -3.4 -19.3 glycosyl transferase compare
PS417_21575 -3.3 -5.1 chemotaxis protein compare
PS417_19735 -3.3 -4.6 flagellar biosynthesis protein FliQ compare
PS417_19740 -3.3 -4.7 flagellar biosynthesis protein flip compare
PS417_19650 -3.3 -4.5 chemotaxis protein CheW compare
PS417_04650 -3.3 -1.3 D-alanine--D-alanine ligase compare
PS417_19350 -3.2 -5.6 GTP cyclohydrolase compare
PS417_19800 -3.2 -2.4 flagellar motor switch protein FliG compare
PS417_21555 -3.1 -6.2 flagellar hook protein FlgE compare
PS417_19745 -3.1 -7.4 flagellar assembly protein FliO compare
PS417_23580 -3.1 -1.9 peptidylprolyl isomerase compare
PS417_20095 -3.0 -14.5 hypothetical protein compare
PS417_19660 -3.0 -6.3 cobalamin biosynthesis protein CobQ compare
PS417_27800 -3.0 -7.0 exodeoxyribonuclease III compare
PS417_21630 -3.0 -4.5 magnesium transporter compare
PS417_05635 -3.0 -4.7 membrane protein compare
PS417_19755 -3.0 -1.8 flagellar motor switch protein FliM compare
PS417_19675 -2.9 -3.7 chemotaxis protein CheY compare
PS417_24835 -2.9 -6.1 hypothetical protein compare
PS417_21570 -2.9 -4.1 flagellar basal body rod protein FlgB compare
PS417_20855 -2.8 -2.0 hypothetical protein compare
PS417_19725 -2.8 -3.2 flagellar biosynthesis protein FlhB compare
PS417_23770 -2.7 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_24705 -2.7 -4.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_19730 -2.7 -1.7 flagellar biosynthesis protein FliR compare
PS417_08410 -2.7 -3.3 hypothetical protein compare
PS417_19835 -2.6 -1.6 flagellar biosynthesis protein FliS compare
PS417_19655 -2.6 -4.0 chemotaxis protein CheW compare
PS417_27195 -2.6 -1.5 N-acetylglutamate synthase compare
PS417_19705 -2.6 -2.0 flagellar biosynthesis regulator FlhF compare
PS417_19870 -2.5 -3.0 flagellar rod assembly protein FlgJ compare
PS417_08135 -2.5 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20985 -2.5 -4.1 porin compare
PS417_25650 -2.4 -3.1 anhydro-N-acetylmuramic acid kinase compare
PS417_20100 -2.4 -8.3 hypothetical protein compare
PS417_19830 -2.3 -3.2 flagellar assembly protein FliT compare
PS417_24155 -2.3 -3.4 ATP-binding protein compare
PS417_19645 -2.3 -3.0 chemotaxis protein compare
PS417_02555 -2.3 -12.3 exoribonuclease R compare
PS417_20690 -2.3 -6.4 chemotaxis protein compare
PS417_04365 -2.2 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_22210 -2.2 -2.2 AraC family transcriptional regulator compare
PS417_27585 -2.2 -2.8 diaminopimelate epimerase compare
PS417_05445 -2.1 -1.6 DNA mismatch repair protein MutT compare
PS417_19820 -2.1 -5.4 histidine kinase compare
PS417_19625 -2.1 -2.4 histidine kinase compare
PS417_02720 -2.1 -1.2 TetR family transcriptional regulator compare
PS417_18570 -2.0 -3.7 peptidoglycan-binding protein compare
PS417_23315 -2.0 -1.5 transcriptional regulator compare
PS417_00045 -2.0 -2.1 glycerol acyltransferase compare
PS417_06600 -2.0 -1.2 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_08350 -1.9 -3.3 preprotein translocase subunit TatD compare
PS417_00535 -1.9 -3.5 Holliday junction resolvase compare
PS417_03560 -1.9 -2.2 GTP-binding protein compare
PS417_22815 -1.9 -6.1 permease compare
PS417_19605 -1.9 -1.6 hypothetical protein compare
PS417_25390 -1.8 -3.8 MFS transporter compare
PS417_27870 -1.8 -4.7 ATP-dependent DNA helicase RecG compare
PS417_22445 -1.8 -3.6 ATP-dependent DNA helicase RuvB compare
PS417_16490 -1.8 -2.0 cell division protein FtsK compare
PS417_01590 -1.8 -1.8 polysaccharide deacetylase compare
PS417_05815 -1.7 -3.5 recombinase RecA compare
PS417_21560 -1.6 -2.6 flagellar basal body rod modification protein FlgD compare
PS417_23160 -1.6 -1.7 50S rRNA methyltransferase compare
PS417_27135 -1.6 -0.9 glutamine synthetase compare
PS417_20880 -1.6 -2.8 GntR family transcriptional regulator compare
PS417_21480 -1.6 -1.6 23S rRNA pseudouridylate synthase compare
PS417_08320 -1.5 -2.8 metal-chelation protein CHAD compare
PS417_25270 -1.5 -3.6 NrdR family transcriptional regulator compare
PS417_27865 -1.5 -2.6 LysR family transcriptional regulator compare
PS417_06675 -1.5 -2.2 ATP-dependent helicase compare
PS417_01955 -1.5 -6.2 peptidase compare
PS417_02225 -1.5 -2.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_06095 -1.5 -1.6 energy transducer TonB compare
PS417_00755 -1.5 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_14980 -1.5 -0.9 universal stress protein UspA compare
PS417_24710 -1.5 -5.4 lipoprotein compare
PS417_13175 -1.4 -2.1 iron transporter compare
PS417_13510 -1.4 -1.0 polyketide cyclase compare
PS417_17240 -1.4 -2.4 trigger factor compare
PS417_07620 -1.4 -1.8 beta-hexosaminidase compare
PS417_11705 -1.4 -6.3 cyclic peptide transporter compare
PS417_11825 -1.4 -2.2 transcriptional regulator compare
PS417_02975 -1.4 -4.6 3-dehydroquinate dehydratase compare
PS417_21270 -1.4 -1.4 translation initiation factor 2 compare
PS417_13140 -1.4 -1.4 oxidoreductase compare
PS417_13425 -1.4 -1.7 cupin compare
PS417_18885 -1.4 -2.1 GntR family transcriptional regulator compare
PS417_12855 -1.3 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04170 -1.3 -4.3 stringent starvation protein A compare
PS417_06480 -1.3 -2.8 hypothetical protein compare
PS417_07575 -1.3 -3.1 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_05065 -1.3 -1.6 hypothetical protein compare
PS417_01915 -1.3 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02395 -1.3 -3.8 DNA topoisomerase IV subunit B compare
PS417_22840 -1.3 -1.3 tRNA-Met compare
PS417_24370 -1.3 -0.8 (2Fe-2S)-binding protein compare
PS417_27795 -1.3 -0.9 orotate phosphoribosyltransferase compare
PS417_24115 -1.2 -1.4 hypothetical protein compare
PS417_09325 -1.2 -4.1 peptidase S41 compare
PS417_26695 -1.2 -1.0 uracil phosphoribosyltransferase compare
PS417_19805 -1.2 -2.4 flagellar M-ring protein FliF compare
PS417_07560 -1.2 -1.3 universal stress protein UspA compare
PS417_10985 -1.2 -0.8 NADH:flavin oxidoreductase compare
PS417_10060 -1.2 -1.9 hypothetical protein compare
PS417_03455 -1.2 -0.9 type III secretion protein compare
PS417_19615 -1.2 -4.2 chemotaxis protein CheW compare
PS417_27005 -1.2 -0.8 membrane protein compare
PS417_09210 -1.2 -1.3 TetR family transcriptional regulator compare
PS417_02630 -1.2 -2.2 NAD synthetase compare
PS417_06145 -1.2 -0.9 hypothetical protein compare
PS417_03380 -1.2 -1.1 hypothetical protein compare
PS417_11400 -1.2 -1.1 phosphoglycerate mutase compare
PS417_06770 -1.2 -3.1 multidrug transporter compare
PS417_06945 -1.1 -1.2 membrane protein compare
PS417_17645 -1.1 -1.4 RND transporter compare
PS417_06730 -1.1 -1.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_02280 -1.1 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_27940 -1.1 -1.2 type VI secretion protein compare
PS417_02210 -1.1 -4.2 diguanylate cyclase compare
PS417_17795 -1.1 -1.4 ABC transporter permease compare
PS417_24500 -1.1 -2.6 DEAD/DEAH box helicase compare
PS417_14605 -1.1 -1.7 adenylate kinase compare
PS417_26145 -1.1 -2.3 hypothetical protein compare
PS417_22825 -1.1 -2.7 hypothetical protein compare
PS417_08090 -1.1 -0.7 3-oxoacyl-ACP reductase compare
PS417_00375 -1.1 -1.9 membrane protein compare
PS417_22690 -1.1 -2.8 phosphogluconate dehydratase compare
PS417_05105 -1.1 -2.4 membrane protein compare
PS417_08025 -1.0 -0.8 acetylornithine aminotransferase compare
PS417_01920 -1.0 -1.4 ATP-dependent protease subunit HslV compare
PS417_19685 -1.0 -2.3 protein phosphatase compare
PS417_15285 -1.0 -0.7 type VI secretion protein compare
PS417_12355 -1.0 -1.0 magnesium chelatase compare
PS417_17215 -1.0 -1.4 peptidylprolyl isomerase compare
PS417_19425 -1.0 -0.8 allantoicase compare
PS417_04290 -1.0 -2.1 hypothetical protein compare
PS417_21955 -1.0 -2.2 dehydrogenase compare
PS417_28225 -1.0 -1.3 hypothetical protein compare
PS417_01340 -1.0 -3.2 agmatine deiminase compare
PS417_17565 -1.0 -1.6 branched-chain amino acid aminotransferase compare
PS417_01130 -1.0 -2.2 L-glyceraldehyde 3-phosphate reductase compare
PS417_16475 -1.0 -1.7 camphor resistance protein CrcB compare
PS417_12650 -1.0 -1.4 magnesium transporter compare
PS417_19955 -1.0 -1.2 hypothetical protein compare
PS417_01400 -1.0 -1.3 hypothetical protein compare
PS417_14805 -1.0 -1.4 AraC family transcriptional regulator compare
PS417_00390 -1.0 -3.9 ABC transporter substrate-binding protein compare
PS417_15495 -1.0 -0.6 FAD-dependent oxidoreductase compare
PS417_01645 -1.0 -1.6 cupin compare
PS417_01510 -1.0 -1.7 hypothetical protein compare
PS417_26270 -1.0 -1.6 AraC family transcriptional regulator compare
PS417_04185 -1.0 -1.9 hypothetical protein compare
PS417_09680 -1.0 -1.2 hydrolase compare
PS417_20785 -1.0 -1.5 transcriptional regulator compare
PS417_12030 -1.0 -1.4 LysR family transcriptional regulator compare
PS417_06775 -1.0 -3.1 antibiotic transporter compare
PS417_07540 -0.9 -2.6 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_07615 -0.9 -3.9 TetR family transcriptional regulator compare
PS417_04080 -0.9 -1.1 peptide ABC transporter substrate-binding protein compare
PS417_23375 -0.9 -1.2 cytochrome C oxidase compare
PS417_02560 -0.9 -1.2 23S rRNA methyltransferase compare
PS417_03260 -0.9 -0.9 5S ribosomal RNA compare
PS417_06735 -0.9 -1.9 3-oxoadipate enol-lactonase compare
PS417_09085 -0.9 -1.0 hypothetical protein compare
PS417_08730 -0.9 -1.6 cytochrome C compare
PS417_21625 -0.9 -0.7 DNA-binding protein compare
PS417_21780 -0.9 -1.7 argininosuccinate lyase compare
PS417_01620 -0.9 -1.7 preprotein translocase subunit SecB compare
PS417_13165 -0.9 -1.8 peroxidase compare
PS417_17630 -0.9 -1.4 RNA polymerase sigma factor compare
PS417_23995 -0.9 -0.7 preprotein translocase subunit SecG compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility experiments

For motility Agar across organisms