Experiment set4IT088 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine_broth_2216 with Sodium nitrite 20 mM

200 most detrimental genes:

  gene name fitness t score description  
CA264_10920 +3.8 28.3 helix-turn-helix-type transcriptional regulator compare
CA264_19005 +3.6 25.9 SusC/RagA family TonB-linked outer membrane protein compare
CA264_06355 +3.5 26.7 ergothioneine biosynthesis protein EgtB compare
CA264_19545 +3.2 16.5 oxidoreductase compare
CA264_07245 +3.2 21.2 hypothetical protein compare
CA264_19540 +3.1 24.0 hypothetical protein compare
CA264_02025 +3.0 19.2 nitroreductase compare
CA264_13015 +2.2 18.0 sensor histidine kinase compare
CA264_01065 +2.1 9.1 MarR family transcriptional regulator compare
CA264_02685 +2.0 10.8 hypothetical protein compare
CA264_18135 +2.0 9.7 ABC transporter ATP-binding protein compare
CA264_19555 +2.0 9.1 GNAT family N-acetyltransferase compare
CA264_19150 +1.8 13.4 TonB dependent receptor compare
CA264_01390 +1.8 10.4 iron ABC transporter permease compare
CA264_01385 +1.7 12.4 iron ABC transporter substrate-binding protein compare
CA264_10365 +1.6 1.5 hypothetical protein compare
CA264_16365 +1.4 1.8 gliding motility protein GldL compare
CA264_03395 +1.4 7.7 phospholipase compare
CA264_14345 +1.4 7.5 hypothetical protein compare
CA264_02030 +1.4 3.8 hypothetical protein compare
CA264_09365 +1.3 7.9 4-hydroxybutyrate CoA-transferase compare
CA264_08075 +1.3 4.4 gliding motility-associated ABC transporter permease subunit GldF compare
CA264_09090 +1.3 7.5 NADPH dehydrogenase NamA compare
CA264_20925 +1.2 2.2 hypothetical protein compare
CA264_14160 +1.2 2.5 HupE / UreJ protein compare
CA264_09700 +1.1 1.2 hypothetical protein compare
CA264_12175 +1.1 3.1 hypothetical protein compare
CA264_01265 +1.1 2.3 50S ribosomal protein L9 compare
CA264_19010 +1.1 7.4 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_14550 +1.0 9.2 cell surface protein SprA compare
CA264_00455 +1.0 4.5 PorT-like protein compare
CA264_19135 +1.0 3.3 hypothetical protein compare
CA264_04550 +1.0 1.5 nucleoid-associated protein, YbaB/EbfC family compare
CA264_05005 +1.0 8.1 colicin receptor compare
CA264_15215 +1.0 5.5 hypothetical protein compare
CA264_21435 +1.0 1.6 hypothetical protein compare
CA264_14350 +0.9 5.2 hemolysin compare
CA264_14635 +0.9 5.8 hypothetical protein compare
CA264_16410 +0.9 7.0 hypothetical protein compare
CA264_04740 +0.9 1.6 arsenate reductase (glutaredoxin) compare
CA264_07490 +0.9 0.9 RNA-binding protein compare
CA264_19215 +0.8 4.5 RNA polymerase subunit sigma compare
CA264_17500 +0.8 4.8 molecular chaperone DnaK compare
CA264_21040 +0.8 2.9 transcriptional regulator compare
CA264_12185 +0.8 4.0 5'/3'-nucleotidase SurE compare
CA264_15230 +0.8 3.9 hypothetical protein compare
CA264_16500 +0.8 0.4 hypothetical protein compare
CA264_16340 +0.8 5.7 hypothetical protein compare
CA264_20945 +0.8 2.1 hypothetical protein compare
CA264_17735 +0.8 6.3 antibiotic ABC transporter ATP-binding protein compare
CA264_06195 +0.8 2.0 YqaE/Pmp3 family membrane protein compare
CA264_00660 +0.8 5.5 hypothetical protein compare
CA264_21225 +0.8 1.9 hypothetical protein compare
CA264_10525 +0.8 1.5 molybdenum cofactor biosynthesis protein MoaE compare
CA264_00250 +0.7 5.1 hypothetical protein compare
CA264_18250 +0.7 1.0 NADH-quinone oxidoreductase subunit B compare
CA264_07775 +0.7 1.3 transcriptional regulator compare
CA264_05275 +0.7 0.7 MFS transporter compare
CA264_13340 +0.7 0.9 iron-sulfur cluster assembly accessory protein compare
CA264_02305 +0.7 3.4 LuxR family transcriptional regulator compare
CA264_15065 +0.7 0.8 formiminoglutamase compare
CA264_10535 +0.7 2.4 cyclic pyranopterin monophosphate synthase MoaC compare
CA264_21065 +0.7 1.8 transcriptional regulator compare
CA264_09085 +0.7 5.7 sugar hydrolase compare
CA264_21555 +0.7 4.0 phosphoribosylpyrophosphate synthetase compare
CA264_14970 +0.7 1.9 gliding motility lipoprotein GldB compare
CA264_09975 +0.7 1.3 hypothetical protein compare
CA264_05535 +0.7 5.1 hypothetical protein compare
CA264_07030 +0.7 4.4 UDP-glucose 4-epimerase compare
CA264_20570 +0.7 1.6 inorganic pyrophosphatase compare
CA264_10870 +0.7 1.5 division/cell wall cluster transcriptional repressor MraZ compare
CA264_01435 +0.7 2.2 anti-anti-sigma factor compare
CA264_11720 +0.7 2.9 hypothetical protein compare
CA264_20120 +0.7 1.8 hypothetical protein compare
CA264_13070 +0.7 4.3 ribonuclease bn compare
CA264_01040 +0.7 2.8 hypothetical protein compare
CA264_08945 +0.7 3.5 type 1 glutamine amidotransferase domain-containing protein compare
CA264_21255 +0.6 2.4 hypothetical protein compare
CA264_17565 +0.6 1.0 hypothetical protein compare
CA264_20635 +0.6 1.0 thioredoxin family protein compare
CA264_01820 +0.6 2.6 hypothetical protein compare
CA264_17750 +0.6 2.6 hypothetical protein compare
CA264_04935 +0.6 2.0 hypothetical protein compare
CA264_18060 +0.6 3.6 hypothetical protein compare
CA264_05785 +0.6 1.4 cbb3-type cytochrome oxidase assembly protein CcoS compare
CA264_21050 +0.6 1.9 hypothetical protein compare
CA264_00565 +0.6 0.9 hypothetical protein compare
CA264_08230 +0.6 3.2 TetR family transcriptional regulator compare
CA264_14440 +0.6 3.4 glutamine cyclotransferase compare
CA264_17485 +0.6 0.9 cytochrome C biosynthesis protein compare
CA264_15205 +0.6 2.8 RNA pseudouridine synthase compare
CA264_11915 +0.6 0.8 peptidoglycan synthetase compare
CA264_00015 +0.6 2.7 hypothetical protein compare
CA264_20440 +0.6 0.9 thiamine biosynthesis protein ThiS compare
CA264_18055 +0.6 4.0 hypothetical protein compare
CA264_16355 +0.6 0.8 gliding motility protein GldN compare
CA264_02690 +0.6 3.6 rhodanese compare
CA264_06070 +0.6 1.0 kinase compare
CA264_08105 +0.6 1.9 NupC/NupG family nucleoside CNT transporter compare
CA264_13315 +0.6 3.6 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA compare
CA264_02500 +0.6 1.4 hypothetical protein compare
CA264_13535 +0.6 3.2 AraC family transcriptional regulator compare
CA264_13800 +0.6 0.4 hypothetical protein compare
CA264_14805 +0.6 1.2 DNA-binding protein compare
CA264_18045 +0.5 1.4 hypothetical protein compare
CA264_05225 +0.5 3.5 MBL fold metallo-hydrolase compare
CA264_19920 +0.5 3.8 alanine glycine permease compare
CA264_15790 +0.5 2.3 hypothetical protein compare
CA264_16105 +0.5 2.3 3-hydroxybutyryl-CoA dehydrogenase compare
CA264_11620 +0.5 4.1 hypothetical protein compare
CA264_11865 +0.5 2.1 hypothetical protein compare
CA264_06555 +0.5 0.3 hypothetical protein compare
CA264_08155 +0.5 2.5 hypothetical protein compare
CA264_17320 +0.5 4.3 hypothetical protein compare
CA264_01795 +0.5 2.2 hypothetical protein compare
CA264_20375 +0.5 1.7 hypothetical protein compare
CA264_02345 +0.5 2.2 restriction endonuclease compare
CA264_01425 +0.5 4.5 RelA/SpoT family protein compare
CA264_19195 +0.5 3.9 hypothetical protein compare
CA264_20465 +0.5 0.6 aspartate carbamoyltransferase compare
CA264_18950 +0.5 2.6 hypothetical protein compare
CA264_02415 +0.5 1.7 dethiobiotin synthase compare
CA264_09985 +0.5 0.7 hypothetical protein compare
CA264_00295 +0.5 1.9 hypothetical protein compare
CA264_02080 +0.5 0.5 hypothetical protein compare
CA264_14005 +0.5 3.0 D-xylose transporter XylE compare
CA264_18020 +0.5 1.7 ABC transporter permease compare
CA264_06330 +0.5 1.3 cation:proton antiporter compare
CA264_21525 +0.5 2.8 DUF305 domain-containing protein compare
CA264_13485 +0.5 2.6 hypothetical protein compare
CA264_12440 +0.5 1.1 methionyl-tRNA formyltransferase compare
CA264_20710 +0.5 1.7 hypothetical protein compare
CA264_07375 +0.5 3.5 NADH-dependent alcohol dehydrogenase compare
CA264_19030 +0.5 1.9 ribosomal subunit interface protein compare
CA264_09545 +0.5 1.1 hypothetical protein compare
CA264_21075 +0.5 3.4 ATP-binding protein compare
CA264_00190 +0.5 4.0 RagB/SusD family nutrient uptake outer membrane protein compare
CA264_13870 +0.5 1.7 hypothetical protein compare
CA264_21410 +0.5 3.5 hypothetical protein compare
CA264_03320 +0.5 1.7 hypothetical protein compare
CA264_11985 +0.5 2.1 dipeptidase E compare
CA264_02465 +0.5 1.7 hypothetical protein compare
CA264_17885 +0.5 1.0 GAF domain-containing protein compare
CA264_19885 +0.5 2.0 uridine kinase compare
CA264_21070 +0.5 2.9 transcriptional repressor compare
CA264_14815 +0.5 0.7 transcriptional regulator compare
CA264_05830 +0.5 0.7 hypothetical protein compare
CA264_10955 +0.4 0.8 phenylacetate-CoA oxygenase subunit PaaJ compare
CA264_16960 +0.4 3.2 T9SS C-terminal target domain-containing protein compare
CA264_09155 +0.4 2.2 anion permease compare
CA264_03025 +0.4 3.0 T9SS C-terminal target domain-containing protein compare
CA264_16370 +0.4 2.6 gliding motility lipoprotein GldK compare
CA264_01805 +0.4 0.8 6-phosphogluconate dehydrogenase (decarboxylating) compare
CA264_14560 +0.4 1.1 VanZ family protein compare
CA264_20715 +0.4 1.1 metallophosphatase compare
CA264_01155 +0.4 1.5 Zn-dependent protease compare
CA264_16360 +0.4 1.0 gliding motility protein GldM compare
CA264_15010 +0.4 0.7 gliding motility lipoprotein GldD compare
CA264_10975 +0.4 1.8 Pathogenesis-related transcriptional factor and ERF protein compare
CA264_05500 +0.4 1.3 hypothetical protein compare
CA264_18190 +0.4 2.3 hypothetical protein compare
CA264_03790 +0.4 1.5 hypothetical protein compare
CA264_00675 +0.4 2.6 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA264_07360 +0.4 1.9 hypothetical protein compare
CA264_15115 +0.4 0.4 hypothetical protein compare
CA264_08490 +0.4 2.5 hypothetical protein compare
CA264_00195 +0.4 2.1 ribonuclease HII compare
CA264_12940 +0.4 2.0 alcohol dehydrogenase compare
CA264_15135 +0.4 1.6 TIGR00730 family Rossman fold protein compare
CA264_19085 +0.4 2.2 RNA polymerase subunit sigma-24 compare
CA264_17780 +0.4 1.6 hypothetical protein compare
CA264_05655 +0.4 2.9 FAD-binding protein compare
CA264_18655 +0.4 0.8 transcriptional repressor compare
CA264_12160 +0.4 0.6 transcriptional regulator compare
CA264_17095 +0.4 1.3 FeoB-associated Cys-rich membrane protein compare
CA264_09280 +0.4 2.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CA264_01090 +0.4 1.3 hypothetical protein compare
CA264_12895 +0.4 2.2 hypothetical protein compare
CA264_20325 +0.4 2.6 cell envelope biogenesis protein OmpA compare
CA264_08040 +0.4 1.3 dCTP deaminase compare
CA264_13225 +0.4 2.0 cupin compare
CA264_13160 +0.4 1.9 hypothetical protein compare
CA264_20020 +0.4 2.5 hypothetical protein compare
CA264_21060 +0.4 3.0 hypothetical protein compare
CA264_05450 +0.4 2.7 DNA-binding protein compare
CA264_03330 +0.4 1.0 peptide-methionine (R)-S-oxide reductase compare
CA264_01430 +0.4 0.7 transcriptional repressor compare
CA264_14355 +0.4 2.2 hypothetical protein compare
CA264_09960 +0.4 1.1 hypothetical protein compare
CA264_17845 +0.4 2.4 GNAT family N-acetyltransferase compare
CA264_06495 +0.4 1.8 hypothetical protein compare
CA264_14280 +0.4 2.4 hypothetical protein compare
CA264_16075 +0.4 2.2 hypothetical protein compare
CA264_05690 +0.4 1.8 hypothetical protein compare
CA264_06440 +0.4 2.2 thioesterase compare
CA264_08125 +0.4 2.3 tetratricopeptide repeat protein compare
CA264_01550 +0.4 2.4 aminotransferase compare
CA264_09075 +0.4 2.2 response regulator compare
CA264_07520 +0.4 2.0 DNA-binding response regulator compare
CA264_07345 +0.4 2.1 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Sodium nitrite in Pontibacter actiniarum KMM 6156, DSM 19842

For stress Sodium nitrite across organisms