Experiment set4IT087 for Pseudomonas simiae WCS417

Compare to:

inner cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
PS417_23950 -7.3 -3.1 polynucleotide phosphorylase/polyadenylase compare
PS417_19730 -6.6 -3.0 flagellar biosynthesis protein FliR compare
PS417_19880 -6.4 -7.6 flagellar basal body L-ring protein compare
PS417_21595 -5.9 -5.0 flagellar biosynthesis protein FlgN compare
PS417_19765 -5.8 -9.1 flagellar hook-length control protein compare
PS417_19695 -5.7 -9.4 flagellar biosynthesis sigma factor compare
PS417_19740 -5.4 -9.1 flagellar biosynthesis protein flip compare
PS417_21585 -5.4 -9.1 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19825 -5.3 -11.4 ATPase AAA compare
PS417_21565 -5.3 -4.0 flagellar basal body rod protein FlgC compare
PS417_22565 -5.3 -1.4 formyltetrahydrofolate deformylase compare
PS417_19725 -5.1 -4.1 flagellar biosynthesis protein FlhB compare
PS417_19860 -5.1 -16.3 flagellar hook protein FlgL compare
PS417_19675 -5.0 -8.6 chemotaxis protein CheY compare
PS417_19690 -4.8 -6.8 histidine kinase compare
PS417_21555 -4.6 -10.0 flagellar hook protein FlgE compare
PS417_05975 -4.5 -1.7 chemotaxis protein CheW compare
PS417_19885 -4.5 -1.5 flagellar basal body rod protein FlgG compare
PS417_19795 -4.4 -9.1 flagellar assembly protein FliH compare
PS417_20090 -4.3 -12.0 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_06375 -4.3 -1.1 deoxycytidine triphosphate deaminase compare
PS417_20095 -4.2 -20.3 hypothetical protein compare
PS417_24705 -4.2 -3.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_20105 -4.2 -20.4 glycosyl transferase compare
PS417_19865 -4.2 -8.6 flagellar hook protein FlgK compare
PS417_19840 -4.2 -11.8 flagellar cap protein FliD compare
PS417_19850 -4.2 -12.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_05635 -4.0 -5.4 membrane protein compare
PS417_19785 -4.0 -4.0 flagellar biogenesis protein compare
PS417_21570 -4.0 -5.1 flagellar basal body rod protein FlgB compare
PS417_21575 -3.9 -7.5 chemotaxis protein compare
PS417_24155 -3.9 -2.7 ATP-binding protein compare
PS417_19655 -3.8 -7.4 chemotaxis protein CheW compare
PS417_19800 -3.8 -2.7 flagellar motor switch protein FliG compare
PS417_19835 -3.8 -1.4 flagellar biosynthesis protein FliS compare
PS417_24835 -3.7 -5.6 hypothetical protein compare
PS417_19710 -3.6 -7.5 flagellar biosynthesis protein FlhA compare
PS417_27795 -3.6 -1.3 orotate phosphoribosyltransferase compare
PS417_19790 -3.6 -3.0 ATP synthase compare
PS417_19645 -3.5 -3.5 chemotaxis protein compare
PS417_27195 -3.4 -1.2 N-acetylglutamate synthase compare
PS417_14065 -3.4 -11.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19650 -3.3 -5.0 chemotaxis protein CheW compare
PS417_19755 -3.3 -1.9 flagellar motor switch protein FliM compare
PS417_19745 -3.2 -5.6 flagellar assembly protein FliO compare
PS417_19665 -3.1 -4.2 flagellar motor protein MotD compare
PS417_27800 -2.9 -9.4 exodeoxyribonuclease III compare
PS417_20690 -2.8 -9.0 chemotaxis protein compare
PS417_20100 -2.8 -8.8 hypothetical protein compare
PS417_08125 -2.6 -1.3 prephenate dehydratase compare
PS417_02555 -2.6 -15.0 exoribonuclease R compare
PS417_19735 -2.6 -1.9 flagellar biosynthesis protein FliQ compare
PS417_25790 -2.6 -4.0 aminoglycoside phosphotransferase compare
PS417_18570 -2.6 -5.2 peptidoglycan-binding protein compare
PS417_19660 -2.5 -4.3 cobalamin biosynthesis protein CobQ compare
PS417_22815 -2.5 -8.8 permease compare
PS417_07620 -2.5 -2.6 beta-hexosaminidase compare
PS417_19805 -2.5 -3.6 flagellar M-ring protein FliF compare
PS417_19350 -2.5 -5.9 GTP cyclohydrolase compare
PS417_23775 -2.4 -2.0 exodeoxyribonuclease V subunit beta compare
PS417_24710 -2.4 -8.9 lipoprotein compare
PS417_02720 -2.4 -1.3 TetR family transcriptional regulator compare
PS417_19870 -2.4 -3.9 flagellar rod assembly protein FlgJ compare
PS417_19705 -2.4 -2.0 flagellar biosynthesis regulator FlhF compare
PS417_01955 -2.3 -8.2 peptidase compare
PS417_04380 -2.2 -1.9 ABC transporter permease compare
PS417_08135 -2.2 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01290 -2.2 -1.7 ADP-ribose diphosphatase compare
PS417_19820 -2.2 -4.7 histidine kinase compare
PS417_23770 -2.2 -1.5 exodeoxyribonuclease V subunit alpha compare
PS417_27870 -2.1 -4.0 ATP-dependent DNA helicase RecG compare
PS417_22445 -2.1 -3.6 ATP-dependent DNA helicase RuvB compare
PS417_22450 -2.1 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_19605 -2.0 -1.8 hypothetical protein compare
PS417_21630 -2.0 -3.0 magnesium transporter compare
PS417_20855 -2.0 -1.9 hypothetical protein compare
PS417_26990 -1.9 -1.5 RNA pyrophosphohydrolase compare
PS417_11705 -1.9 -6.5 cyclic peptide transporter compare
PS417_22210 -1.9 -2.0 AraC family transcriptional regulator compare
PS417_00975 -1.9 -1.6 hypothetical protein compare
PS417_15495 -1.9 -1.1 FAD-dependent oxidoreductase compare
PS417_04650 -1.9 -0.8 D-alanine--D-alanine ligase compare
PS417_15705 -1.8 -2.4 nitrate reductase compare
PS417_25650 -1.8 -3.9 anhydro-N-acetylmuramic acid kinase compare
PS417_25390 -1.7 -3.3 MFS transporter compare
PS417_01920 -1.7 -2.0 ATP-dependent protease subunit HslV compare
PS417_02980 -1.7 -1.5 chemotaxis protein compare
PS417_16490 -1.7 -2.1 cell division protein FtsK compare
PS417_02895 -1.7 -1.7 precorrin-6Y C5,15-methyltransferase compare
PS417_02210 -1.7 -5.2 diguanylate cyclase compare
PS417_06500 -1.6 -1.8 hypothetical protein compare
PS417_24115 -1.6 -2.3 hypothetical protein compare
PS417_10245 -1.6 -1.7 hypothetical protein compare
PS417_14515 -1.6 -1.9 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_09245 -1.6 -1.7 recombinase RdgC compare
PS417_21625 -1.6 -1.0 DNA-binding protein compare
PS417_00535 -1.6 -2.4 Holliday junction resolvase compare
PS417_17240 -1.6 -4.0 trigger factor compare
PS417_25775 -1.6 -5.6 lipoprotein compare
PS417_27585 -1.6 -1.8 diaminopimelate epimerase compare
PS417_00650 -1.6 -0.9 LysR family transcriptional regulator compare
PS417_08130 -1.6 -1.6 aspartate aminotransferase compare
PS417_19830 -1.6 -1.9 flagellar assembly protein FliT compare
PS417_21560 -1.5 -2.2 flagellar basal body rod modification protein FlgD compare
PS417_04170 -1.5 -6.4 stringent starvation protein A compare
PS417_20880 -1.5 -1.8 GntR family transcriptional regulator compare
PS417_04180 -1.5 -2.5 GntR family transcriptional regulator compare
PS417_05985 -1.5 -1.7 chemotaxis protein CheY compare
PS417_00755 -1.5 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_22260 -1.4 -2.5 segregation and condensation protein B compare
PS417_01990 -1.4 -3.6 cell division protein compare
PS417_05815 -1.4 -4.3 recombinase RecA compare
PS417_26985 -1.4 -3.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_24650 -1.4 -1.3 membrane protein compare
PS417_19095 -1.4 -1.6 hypothetical protein compare
PS417_22840 -1.4 -1.9 tRNA-Met compare
PS417_06095 -1.4 -1.6 energy transducer TonB compare
PS417_20985 -1.4 -2.1 porin compare
PS417_14650 -1.4 -4.0 chemotaxis protein compare
PS417_09325 -1.4 -4.9 peptidase S41 compare
PS417_07840 -1.4 -3.7 hypothetical protein compare
PS417_08200 -1.4 -3.1 hypothetical protein compare
PS417_07635 -1.4 -7.0 transcription-repair coupling factor compare
PS417_06770 -1.3 -5.2 multidrug transporter compare
PS417_19425 -1.3 -0.9 allantoicase compare
PS417_09605 -1.3 -2.0 glycosyl transferase compare
PS417_02975 -1.3 -2.7 3-dehydroquinate dehydratase compare
PS417_19955 -1.3 -1.8 hypothetical protein compare
PS417_03260 -1.3 -2.0 5S ribosomal RNA compare
PS417_04375 -1.3 -2.2 ABC transporter ATP-binding protein compare
PS417_27360 -1.3 -4.6 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_03560 -1.3 -1.9 GTP-binding protein compare
PS417_13990 -1.3 -2.1 LysR family transcriptional regulator compare
PS417_07575 -1.2 -3.9 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_02280 -1.2 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_13305 -1.2 -1.4 hypothetical protein compare
PS417_01095 -1.2 -1.3 amino acid ABC transporter ATP-binding protein compare
PS417_25710 -1.2 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_02815 -1.2 -3.4 urea ABC transporter ATP-binding protein compare
PS417_06160 -1.2 -7.2 beta-(1-3)-glucosyl transferase conserved
PS417_27245 -1.2 -3.5 aminotransferase DegT compare
PS417_09335 -1.2 -1.6 HAD family hydrolase compare
PS417_20785 -1.2 -3.4 transcriptional regulator compare
PS417_24675 -1.2 -1.2 lipoyl synthase compare
PS417_02395 -1.2 -2.8 DNA topoisomerase IV subunit B compare
PS417_24615 -1.2 -0.8 hypothetical protein compare
PS417_19625 -1.2 -2.0 histidine kinase compare
PS417_24230 -1.2 -5.8 ATP-dependent protease compare
PS417_02805 -1.2 -1.5 urease subunit gamma compare
PS417_06530 -1.2 -1.8 membrane protein compare
PS417_21730 -1.2 -3.2 peptidase M14 compare
PS417_08245 -1.1 -0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_00045 -1.1 -1.6 glycerol acyltransferase compare
PS417_22795 -1.1 -2.0 exclusion suppressor FxsA compare
PS417_03930 -1.1 -6.2 thymidine phosphorylase compare
PS417_21390 -1.1 -4.1 hypothetical protein compare
PS417_08945 -1.1 -4.8 heat shock protein 90 compare
PS417_17780 -1.1 -0.9 Ais protein compare
PS417_22825 -1.1 -3.4 hypothetical protein compare
PS417_12245 -1.1 -2.3 GNAT family acetyltransferase compare
PS417_04080 -1.1 -1.8 peptide ABC transporter substrate-binding protein compare
PS417_17865 -1.1 -3.1 2-keto-3-deoxy-L-rhamnonate aldolase compare
PS417_04385 -1.1 -4.4 organic solvent ABC transporter substrate-binding protein compare
PS417_19620 -1.1 -1.3 hypothetical protein compare
PS417_10655 -1.1 -2.3 LuxR family transcriptional regulator compare
PS417_05160 -1.1 -1.1 DNA polymerase III subunit chi compare
PS417_23460 -1.1 -2.3 LysR family transcriptional regulator compare
PS417_10425 -1.1 -1.6 hypothetical protein compare
PS417_06540 -1.1 -1.4 membrane protein compare
PS417_27595 -1.1 -1.9 recombinase XerC compare
PS417_01600 -1.1 -4.7 peptidase M23 compare
PS417_03005 -1.0 -4.5 arginine decarboxylase compare
PS417_02225 -1.0 -1.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21580 -1.0 -4.6 chemotaxis protein CheW conserved
PS417_04295 -1.0 -5.4 peptidase PmbA compare
PS417_09045 -1.0 -3.4 histidine kinase compare
PS417_24500 -1.0 -2.5 DEAD/DEAH box helicase compare
PS417_10520 -1.0 -2.8 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_19685 -1.0 -3.5 protein phosphatase compare
PS417_23205 -1.0 -3.0 transcriptional regulator compare
PS417_21090 -1.0 -2.5 hypothetical protein compare
PS417_04590 -1.0 -3.2 methyltransferase compare
PS417_07410 -1.0 -2.5 hypothetical protein compare
PS417_10675 -1.0 -0.8 TetR family transcriptional regulator compare
PS417_15225 -1.0 -2.1 alpha/beta hydrolase compare
PS417_03145 -1.0 -1.2 acetyl-CoA acetyltransferase compare
PS417_10405 -1.0 -0.8 filamentous hemagglutinin compare
PS417_06730 -1.0 -1.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_12375 -1.0 -1.1 serine/threonine protein phosphatase compare
PS417_20850 -1.0 -4.9 hypothetical protein compare
PS417_02040 -0.9 -1.7 3-hydroxylacyl-ACP dehydratase compare
PS417_07540 -0.9 -2.5 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_06515 -0.9 -6.4 beta-agarase conserved
PS417_08580 -0.9 -3.6 histidine kinase compare
PS417_25825 -0.9 -2.4 sulfurtransferase compare
PS417_09460 -0.9 -2.0 alkanesulfonate monooxygenase compare
PS417_08350 -0.9 -1.6 preprotein translocase subunit TatD compare
PS417_12260 -0.9 -2.8 hypothetical protein compare
PS417_28390 -0.9 -1.9 CDP-alcohol phosphatidyltransferase compare
PS417_13545 -0.9 -1.8 arginine aminotransferase compare


Specific Phenotypes

For 3 genes in this experiment

For motility Agar in Pseudomonas simiae WCS417

For motility Agar across organisms