Experiment set4IT086 for Pseudomonas simiae WCS417

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
PS417_21570 -8.1 -4.8 flagellar basal body rod protein FlgB compare
PS417_19765 -6.4 -9.8 flagellar hook-length control protein compare
PS417_21565 -6.3 -4.3 flagellar basal body rod protein FlgC compare
PS417_24705 -5.4 -4.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_19800 -5.3 -2.4 flagellar motor switch protein FliG compare
PS417_21595 -5.2 -5.7 flagellar biosynthesis protein FlgN compare
PS417_19725 -5.0 -4.1 flagellar biosynthesis protein FlhB compare
PS417_05635 -4.9 -7.9 membrane protein compare
PS417_14065 -4.9 -14.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_21585 -4.9 -11.0 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19695 -4.9 -6.6 flagellar biosynthesis sigma factor compare
PS417_08125 -4.8 -1.5 prephenate dehydratase compare
PS417_19675 -4.8 -7.7 chemotaxis protein CheY compare
PS417_19740 -4.8 -4.4 flagellar biosynthesis protein flip compare
PS417_19860 -4.8 -17.3 flagellar hook protein FlgL compare
PS417_19690 -4.6 -8.0 histidine kinase compare
PS417_20090 -4.5 -12.8 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_21575 -4.3 -7.6 chemotaxis protein compare
PS417_05975 -4.3 -1.9 chemotaxis protein CheW compare
PS417_19880 -4.3 -6.7 flagellar basal body L-ring protein compare
PS417_19705 -4.2 -3.4 flagellar biosynthesis regulator FlhF compare
PS417_06375 -4.2 -1.3 deoxycytidine triphosphate deaminase compare
PS417_19795 -4.2 -9.6 flagellar assembly protein FliH compare
PS417_19790 -4.2 -2.9 ATP synthase compare
PS417_19710 -4.1 -12.2 flagellar biosynthesis protein FlhA compare
PS417_19850 -4.1 -10.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19825 -4.1 -8.0 ATPase AAA compare
PS417_24835 -4.1 -4.5 hypothetical protein compare
PS417_19665 -4.0 -5.1 flagellar motor protein MotD compare
PS417_20610 -3.9 -1.7 hypothetical protein compare
PS417_21555 -3.8 -9.7 flagellar hook protein FlgE compare
PS417_20100 -3.7 -15.1 hypothetical protein compare
PS417_19865 -3.7 -7.5 flagellar hook protein FlgK compare
PS417_20105 -3.6 -18.5 glycosyl transferase compare
PS417_19835 -3.6 -1.6 flagellar biosynthesis protein FliS compare
PS417_19650 -3.6 -5.1 chemotaxis protein CheW compare
PS417_19870 -3.6 -4.5 flagellar rod assembly protein FlgJ compare
PS417_19840 -3.6 -9.4 flagellar cap protein FliD compare
PS417_19735 -3.5 -5.0 flagellar biosynthesis protein FliQ compare
PS417_20095 -3.5 -13.7 hypothetical protein compare
PS417_04650 -3.4 -1.4 D-alanine--D-alanine ligase compare
PS417_19745 -3.4 -5.3 flagellar assembly protein FliO compare
PS417_27795 -3.4 -1.5 orotate phosphoribosyltransferase compare
PS417_19350 -3.3 -6.1 GTP cyclohydrolase compare
PS417_19660 -3.3 -4.4 cobalamin biosynthesis protein CobQ compare
PS417_02560 -3.3 -3.3 23S rRNA methyltransferase compare
PS417_22565 -3.3 -1.7 formyltetrahydrofolate deformylase compare
PS417_24155 -3.2 -3.8 ATP-binding protein compare
PS417_24615 -3.2 -1.4 hypothetical protein compare
PS417_20855 -3.1 -2.3 hypothetical protein compare
PS417_19655 -3.1 -3.7 chemotaxis protein CheW compare
PS417_24710 -3.0 -9.4 lipoprotein compare
PS417_08135 -3.0 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27800 -2.8 -8.5 exodeoxyribonuclease III compare
PS417_23775 -2.8 -2.6 exodeoxyribonuclease V subunit beta compare
PS417_04380 -2.7 -2.9 ABC transporter permease compare
PS417_18570 -2.7 -4.2 peptidoglycan-binding protein compare
PS417_19820 -2.6 -4.8 histidine kinase compare
PS417_21480 -2.6 -2.3 23S rRNA pseudouridylate synthase compare
PS417_06770 -2.5 -7.0 multidrug transporter compare
PS417_19755 -2.5 -2.0 flagellar motor switch protein FliM compare
PS417_19885 -2.5 -1.1 flagellar basal body rod protein FlgG compare
PS417_02555 -2.5 -12.9 exoribonuclease R compare
PS417_01955 -2.4 -9.4 peptidase compare
PS417_22815 -2.4 -7.7 permease compare
PS417_19830 -2.3 -2.6 flagellar assembly protein FliT compare
PS417_02975 -2.3 -5.3 3-dehydroquinate dehydratase compare
PS417_19645 -2.2 -2.8 chemotaxis protein compare
PS417_16490 -2.2 -2.3 cell division protein FtsK compare
PS417_27195 -2.1 -1.8 N-acetylglutamate synthase compare
PS417_26530 -2.1 -1.8 hypothetical protein compare
PS417_25650 -2.1 -2.9 anhydro-N-acetylmuramic acid kinase compare
PS417_26990 -2.1 -2.0 RNA pyrophosphohydrolase compare
PS417_20690 -2.0 -7.7 chemotaxis protein compare
PS417_09085 -2.0 -1.6 hypothetical protein compare
PS417_25790 -2.0 -3.6 aminoglycoside phosphotransferase compare
PS417_08410 -2.0 -3.1 hypothetical protein compare
PS417_19730 -2.0 -2.7 flagellar biosynthesis protein FliR compare
PS417_20985 -2.0 -2.9 porin compare
PS417_26985 -2.0 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_25390 -1.9 -3.9 MFS transporter compare
PS417_08945 -1.9 -6.5 heat shock protein 90 compare
PS417_11705 -1.9 -6.2 cyclic peptide transporter compare
PS417_05815 -1.9 -5.1 recombinase RecA compare
PS417_01990 -1.9 -5.3 cell division protein compare
PS417_00755 -1.8 -1.1 biofilm PGA synthesis protein PgaD compare
PS417_23950 -1.8 -2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_01920 -1.8 -2.3 ATP-dependent protease subunit HslV compare
PS417_07575 -1.8 -4.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_00045 -1.7 -2.3 glycerol acyltransferase compare
PS417_26605 -1.7 -1.8 malonate decarboxylase subunit beta compare
PS417_23770 -1.7 -1.5 exodeoxyribonuclease V subunit alpha compare
PS417_20785 -1.7 -7.5 transcriptional regulator compare
PS417_24230 -1.7 -6.8 ATP-dependent protease compare
PS417_07620 -1.6 -1.3 beta-hexosaminidase compare
PS417_09210 -1.6 -2.3 TetR family transcriptional regulator compare
PS417_15495 -1.6 -1.0 FAD-dependent oxidoreductase compare
PS417_21390 -1.6 -5.7 hypothetical protein compare
PS417_01600 -1.6 -5.1 peptidase M23 compare
PS417_04170 -1.6 -6.2 stringent starvation protein A compare
PS417_03260 -1.6 -2.6 5S ribosomal RNA compare
PS417_02210 -1.6 -6.8 diguanylate cyclase compare
PS417_25270 -1.6 -3.6 NrdR family transcriptional regulator compare
PS417_21630 -1.6 -3.0 magnesium transporter compare
PS417_22825 -1.6 -5.0 hypothetical protein compare
PS417_17240 -1.6 -4.2 trigger factor compare
PS417_25775 -1.6 -5.0 lipoprotein compare
PS417_22445 -1.5 -4.1 ATP-dependent DNA helicase RuvB compare
PS417_01285 -1.5 -2.3 haloacid dehalogenase compare
PS417_03560 -1.5 -2.1 GTP-binding protein compare
PS417_01620 -1.5 -2.7 preprotein translocase subunit SecB compare
PS417_15705 -1.5 -2.2 nitrate reductase compare
PS417_22450 -1.4 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_19805 -1.4 -2.4 flagellar M-ring protein FliF compare
PS417_27865 -1.4 -2.6 LysR family transcriptional regulator compare
PS417_02475 -1.4 -2.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_27870 -1.4 -3.0 ATP-dependent DNA helicase RecG compare
PS417_08245 -1.4 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08230 -1.4 -2.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_11475 -1.4 -3.7 membrane protein compare
PS417_18545 -1.4 -2.4 cell division protein compare
PS417_08205 -1.4 -2.6 acetyltransferase compare
PS417_20880 -1.4 -2.5 GntR family transcriptional regulator compare
PS417_26260 -1.3 -1.8 hypothetical protein compare
PS417_08190 -1.3 -7.6 membrane protein compare
PS417_27585 -1.3 -2.7 diaminopimelate epimerase compare
PS417_00390 -1.3 -5.6 ABC transporter substrate-binding protein compare
PS417_05985 -1.3 -3.0 chemotaxis protein CheY compare
PS417_18885 -1.3 -2.1 GntR family transcriptional regulator compare
PS417_19785 -1.3 -1.3 flagellar biogenesis protein compare
PS417_06865 -1.3 -1.7 transporter compare
PS417_02070 -1.3 -0.8 membrane protein compare
PS417_02280 -1.3 -2.3 GlcNAc-PI de-N-acetylase compare
PS417_03000 -1.2 -2.6 translation initiation factor Sui1 compare
PS417_25645 -1.2 -3.5 peptidase M23 compare
PS417_08850 -1.2 -5.0 beta (1-6) glucans synthase compare
PS417_05820 -1.2 -1.8 recombinase RecX compare
PS417_10025 -1.2 -1.6 bacteriophage lambda NinG family protein compare
PS417_22840 -1.2 -2.1 tRNA-Met compare
PS417_00155 -1.1 -3.3 2-dehydro-3-deoxygalactonokinase compare
PS417_04585 -1.1 -1.7 hypothetical protein compare
PS417_00375 -1.1 -2.6 membrane protein compare
PS417_03930 -1.1 -4.6 thymidine phosphorylase compare
PS417_08200 -1.1 -1.9 hypothetical protein compare
PS417_27940 -1.1 -0.9 type VI secretion protein compare
PS417_00345 -1.1 -2.2 copper-binding protein compare
PS417_20850 -1.1 -5.7 hypothetical protein compare
PS417_22260 -1.1 -2.2 segregation and condensation protein B compare
PS417_21560 -1.1 -1.8 flagellar basal body rod modification protein FlgD compare
PS417_27075 -1.1 -4.3 thiol-disulfide isomerase compare
PS417_04590 -1.1 -3.1 methyltransferase compare
PS417_10015 -1.1 -0.9 hypothetical protein compare
PS417_19685 -1.1 -3.6 protein phosphatase compare
PS417_06095 -1.1 -1.1 energy transducer TonB compare
PS417_21655 -1.1 -0.7 aspartate kinase compare
PS417_00535 -1.1 -0.9 Holliday junction resolvase compare
PS417_14650 -1.1 -3.5 chemotaxis protein compare
PS417_06675 -1.1 -2.5 ATP-dependent helicase compare
PS417_21015 -1.1 -1.8 EstX protein compare
PS417_23205 -1.1 -4.4 transcriptional regulator compare
PS417_17125 -1.1 -2.3 transcriptional regulator compare
PS417_03385 -1.0 -1.4 flavin reductase compare
PS417_04295 -1.0 -5.3 peptidase PmbA compare
PS417_23025 -1.0 -4.1 murein transglycosylase compare
PS417_22855 -1.0 -3.3 ssDNA exonuclease RecJ compare
PS417_13305 -1.0 -1.2 hypothetical protein compare
PS417_20025 -1.0 -1.2 alpha-ribazole phosphatase compare
PS417_22795 -1.0 -1.9 exclusion suppressor FxsA compare
PS417_28275 -1.0 -2.7 cobalamin biosynthesis protein CobW compare
PS417_07635 -1.0 -5.8 transcription-repair coupling factor compare
PS417_08420 -1.0 -3.6 lipoprotein compare
PS417_17945 -1.0 -0.9 hypothetical protein compare
PS417_18540 -1.0 -2.3 colicin V production CvpA compare
PS417_27360 -1.0 -2.3 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_17490 -1.0 -2.1 ABC transporter ATP-binding protein compare
PS417_17215 -1.0 -2.4 peptidylprolyl isomerase compare
PS417_04595 -1.0 -2.1 cell division protein MraZ compare
PS417_06540 -1.0 -1.0 membrane protein compare
PS417_04390 -1.0 -4.7 toluene tolerance protein compare
PS417_20875 -1.0 -3.4 chromosome segregation protein SMC compare
PS417_07710 -1.0 -4.9 membrane protein compare
PS417_00085 -1.0 -2.3 16S rRNA methyltransferase compare
PS417_02895 -0.9 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_21580 -0.9 -3.6 chemotaxis protein CheW conserved
PS417_26800 -0.9 -4.1 cell division protein FtsX compare
PS417_04180 -0.9 -3.7 GntR family transcriptional regulator compare
PS417_18000 -0.9 -1.9 hypothetical protein compare
PS417_06775 -0.9 -2.6 antibiotic transporter compare
PS417_27245 -0.9 -2.9 aminotransferase DegT compare
PS417_17505 -0.9 -2.2 LuxR family transcriptional regulator compare
PS417_27065 -0.9 -3.1 hypothetical protein compare
PS417_12520 -0.9 -2.3 hypothetical protein compare
PS417_16720 -0.9 -1.0 membrane protein compare
PS417_12660 -0.9 -1.0 hypothetical protein compare
PS417_06030 -0.9 -2.8 hypothetical protein compare
PS417_23215 -0.9 -1.7 RNA methyltransferase compare
PS417_19620 -0.9 -1.6 hypothetical protein compare
PS417_24905 -0.9 -3.7 DNA-binding protein compare
PS417_04385 -0.9 -3.2 organic solvent ABC transporter substrate-binding protein compare
PS417_13175 -0.9 -1.3 iron transporter compare


Specific Phenotypes

For 6 genes in this experiment

For motility Agar in Pseudomonas simiae WCS417

For motility Agar across organisms