Experiment set4IT085 for Pseudomonas simiae WCS417

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
PS417_19880 -6.3 -8.6 flagellar basal body L-ring protein compare
PS417_19745 -6.2 -6.9 flagellar assembly protein FliO compare
PS417_21595 -6.1 -4.8 flagellar biosynthesis protein FlgN compare
PS417_19675 -6.1 -6.8 chemotaxis protein CheY compare
PS417_21585 -5.7 -10.8 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_24705 -5.5 -4.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_19765 -5.4 -6.1 flagellar hook-length control protein compare
PS417_19650 -5.3 -3.7 chemotaxis protein CheW compare
PS417_19860 -5.0 -17.0 flagellar hook protein FlgL compare
PS417_19795 -4.9 -9.3 flagellar assembly protein FliH compare
PS417_19785 -4.9 -3.6 flagellar biogenesis protein compare
PS417_19740 -4.8 -4.6 flagellar biosynthesis protein flip compare
PS417_19725 -4.7 -4.4 flagellar biosynthesis protein FlhB compare
PS417_19695 -4.6 -8.7 flagellar biosynthesis sigma factor compare
PS417_19755 -4.5 -1.8 flagellar motor switch protein FliM compare
PS417_19710 -4.5 -12.2 flagellar biosynthesis protein FlhA compare
PS417_19730 -4.5 -2.9 flagellar biosynthesis protein FliR compare
PS417_19840 -4.5 -10.6 flagellar cap protein FliD compare
PS417_21565 -4.5 -4.3 flagellar basal body rod protein FlgC compare
PS417_19850 -4.5 -11.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19885 -4.4 -1.6 flagellar basal body rod protein FlgG compare
PS417_21555 -4.3 -11.3 flagellar hook protein FlgE compare
PS417_23950 -4.3 -3.9 polynucleotide phosphorylase/polyadenylase compare
PS417_20090 -4.3 -12.0 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_00755 -4.3 -1.2 biofilm PGA synthesis protein PgaD compare
PS417_06375 -4.3 -1.2 deoxycytidine triphosphate deaminase compare
PS417_19865 -4.2 -8.6 flagellar hook protein FlgK compare
PS417_19825 -4.1 -7.2 ATPase AAA compare
PS417_05635 -4.1 -8.2 membrane protein compare
PS417_03560 -4.0 -2.9 GTP-binding protein compare
PS417_19805 -4.0 -2.9 flagellar M-ring protein FliF compare
PS417_20095 -4.0 -16.2 hypothetical protein compare
PS417_19690 -3.8 -3.6 histidine kinase compare
PS417_14065 -3.8 -9.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19790 -3.7 -3.2 ATP synthase compare
PS417_19835 -3.7 -1.5 flagellar biosynthesis protein FliS compare
PS417_20105 -3.6 -18.9 glycosyl transferase compare
PS417_21570 -3.4 -3.5 flagellar basal body rod protein FlgB compare
PS417_19600 -3.4 -1.3 exonuclease compare
PS417_21625 -3.3 -1.3 DNA-binding protein compare
PS417_19735 -3.3 -5.5 flagellar biosynthesis protein FliQ compare
PS417_22565 -3.3 -1.6 formyltetrahydrofolate deformylase compare
PS417_19655 -3.3 -3.9 chemotaxis protein CheW compare
PS417_20100 -3.2 -10.1 hypothetical protein compare
PS417_19830 -3.2 -2.5 flagellar assembly protein FliT compare
PS417_19800 -3.1 -2.1 flagellar motor switch protein FliG compare
PS417_21575 -3.0 -4.3 chemotaxis protein compare
PS417_23770 -3.0 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_19870 -3.0 -4.3 flagellar rod assembly protein FlgJ compare
PS417_04650 -2.9 -1.6 D-alanine--D-alanine ligase compare
PS417_19665 -2.9 -3.1 flagellar motor protein MotD compare
PS417_22815 -2.9 -8.3 permease compare
PS417_24155 -2.8 -3.8 ATP-binding protein compare
PS417_05160 -2.8 -1.5 DNA polymerase III subunit chi compare
PS417_08135 -2.8 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20855 -2.7 -2.0 hypothetical protein compare
PS417_07620 -2.7 -2.6 beta-hexosaminidase compare
PS417_19660 -2.7 -3.7 cobalamin biosynthesis protein CobQ compare
PS417_01955 -2.6 -10.3 peptidase compare
PS417_19820 -2.5 -5.9 histidine kinase compare
PS417_02555 -2.5 -13.7 exoribonuclease R compare
PS417_20690 -2.5 -7.5 chemotaxis protein compare
PS417_18570 -2.4 -3.5 peptidoglycan-binding protein compare
PS417_20610 -2.4 -1.8 hypothetical protein compare
PS417_27800 -2.4 -6.1 exodeoxyribonuclease III compare
PS417_02210 -2.3 -8.2 diguanylate cyclase compare
PS417_19350 -2.3 -3.5 GTP cyclohydrolase compare
PS417_24835 -2.3 -3.6 hypothetical protein compare
PS417_27795 -2.3 -1.3 orotate phosphoribosyltransferase compare
PS417_24710 -2.2 -7.7 lipoprotein compare
PS417_22445 -2.2 -4.2 ATP-dependent DNA helicase RuvB compare
PS417_27195 -2.2 -1.0 N-acetylglutamate synthase compare
PS417_00375 -2.2 -3.7 membrane protein compare
PS417_19705 -2.2 -2.3 flagellar biosynthesis regulator FlhF compare
PS417_05975 -2.2 -1.7 chemotaxis protein CheW compare
PS417_03380 -2.1 -1.5 hypothetical protein compare
PS417_21480 -2.1 -1.9 23S rRNA pseudouridylate synthase compare
PS417_02225 -2.1 -3.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21630 -2.1 -3.6 magnesium transporter compare
PS417_05365 -2.1 -2.4 FAD-binding protein compare
PS417_02975 -2.1 -3.9 3-dehydroquinate dehydratase compare
PS417_20985 -2.1 -2.7 porin compare
PS417_12855 -2.1 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25270 -2.0 -3.8 NrdR family transcriptional regulator compare
PS417_19285 -2.0 -2.3 ankyrin compare
PS417_08090 -2.0 -1.7 3-oxoacyl-ACP reductase compare
PS417_24615 -1.9 -1.2 hypothetical protein compare
PS417_19645 -1.9 -2.1 chemotaxis protein compare
PS417_26850 -1.9 -0.9 twin-arginine translocation pathway signal protein compare
PS417_20850 -1.8 -8.5 hypothetical protein compare
PS417_26175 -1.8 -1.2 sarcosine oxidase subunit gamma compare
PS417_25650 -1.8 -4.4 anhydro-N-acetylmuramic acid kinase compare
PS417_09605 -1.8 -2.0 glycosyl transferase compare
PS417_01620 -1.8 -2.8 preprotein translocase subunit SecB compare
PS417_08220 -1.8 -1.1 epimerase compare
PS417_27870 -1.7 -3.0 ATP-dependent DNA helicase RecG compare
PS417_08125 -1.7 -1.1 prephenate dehydratase compare
PS417_07575 -1.7 -3.8 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_01915 -1.7 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23775 -1.7 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_27585 -1.7 -2.4 diaminopimelate epimerase compare
PS417_06770 -1.6 -4.5 multidrug transporter compare
PS417_24370 -1.6 -1.0 (2Fe-2S)-binding protein compare
PS417_01990 -1.6 -5.4 cell division protein compare
PS417_27065 -1.6 -3.3 hypothetical protein compare
PS417_07470 -1.6 -1.5 hypothetical protein compare
PS417_08230 -1.6 -2.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_26695 -1.6 -1.2 uracil phosphoribosyltransferase compare
PS417_26990 -1.6 -1.3 RNA pyrophosphohydrolase compare
PS417_00535 -1.6 -1.8 Holliday junction resolvase compare
PS417_21560 -1.5 -2.0 flagellar basal body rod modification protein FlgD compare
PS417_23995 -1.5 -1.0 preprotein translocase subunit SecG compare
PS417_08200 -1.5 -3.0 hypothetical protein compare
PS417_27865 -1.5 -2.6 LysR family transcriptional regulator compare
PS417_11705 -1.5 -5.9 cyclic peptide transporter compare
PS417_15540 -1.5 -1.6 NUDIX hydrolase compare
PS417_23160 -1.5 -1.7 50S rRNA methyltransferase compare
PS417_05815 -1.5 -3.1 recombinase RecA compare
PS417_27045 -1.5 -2.4 ATPase compare
PS417_13965 -1.5 -2.9 acetoin utilization protein compare
PS417_05165 -1.4 -2.9 cytosol aminopeptidase compare
PS417_22825 -1.4 -3.4 hypothetical protein compare
PS417_00045 -1.4 -1.9 glycerol acyltransferase compare
PS417_25790 -1.4 -2.6 aminoglycoside phosphotransferase compare
PS417_13510 -1.4 -1.0 polyketide cyclase compare
PS417_05985 -1.4 -1.7 chemotaxis protein CheY compare
PS417_26985 -1.4 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_24230 -1.4 -6.2 ATP-dependent protease compare
PS417_26815 -1.4 -1.9 peptidase M16 compare
PS417_04170 -1.3 -4.1 stringent starvation protein A compare
PS417_16195 -1.3 -0.9 AraC family transcriptional regulator compare
PS417_02805 -1.3 -1.6 urease subunit gamma compare
PS417_01920 -1.3 -1.8 ATP-dependent protease subunit HslV compare
PS417_05025 -1.3 -2.1 maleylacetoacetate isomerase compare
PS417_00180 -1.3 -1.8 tryptophan synthase subunit alpha compare
PS417_08190 -1.3 -7.3 membrane protein compare
PS417_21015 -1.3 -2.1 EstX protein compare
PS417_12400 -1.3 -2.6 oxidoreductase compare
PS417_17240 -1.3 -2.8 trigger factor compare
PS417_27300 -1.3 -0.8 cell division protein ZapA compare
PS417_20715 -1.3 -2.6 cytochrome Cbb3 compare
PS417_04410 -1.3 -1.2 hypothetical protein compare
PS417_15085 -1.3 -3.5 ATPase AAA compare
PS417_21390 -1.3 -4.5 hypothetical protein compare
PS417_20785 -1.2 -2.4 transcriptional regulator compare
PS417_02720 -1.2 -1.0 TetR family transcriptional regulator compare
PS417_09300 -1.2 -1.4 peptidylprolyl isomerase compare
PS417_04365 -1.2 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_15400 -1.2 -0.9 hypothetical protein compare
PS417_20025 -1.2 -1.4 alpha-ribazole phosphatase compare
PS417_25775 -1.2 -3.7 lipoprotein compare
PS417_12050 -1.2 -3.0 short-chain dehydrogenase compare
PS417_01965 -1.2 -0.9 fimbriae biosynthesis protein compare
PS417_14925 -1.1 -1.1 2-methylcitrate dehydratase compare
PS417_01825 -1.1 -2.0 chemotaxis protein compare
PS417_02280 -1.1 -1.8 GlcNAc-PI de-N-acetylase compare
PS417_03930 -1.1 -4.7 thymidine phosphorylase compare
PS417_23315 -1.1 -0.9 transcriptional regulator compare
PS417_19685 -1.1 -3.1 protein phosphatase compare
PS417_15200 -1.1 -2.3 protein activator of alkane oxidation PraB compare
PS417_17610 -1.1 -1.4 AsnC family transcriptional regulator compare
PS417_08225 -1.1 -3.3 acetolactate synthase compare
PS417_19955 -1.1 -1.0 hypothetical protein compare
PS417_00650 -1.1 -0.8 LysR family transcriptional regulator compare
PS417_25030 -1.1 -2.0 hypothetical protein compare
PS417_21380 -1.1 -3.6 GntR family transcriptional regulator compare
PS417_08410 -1.1 -1.5 hypothetical protein compare
PS417_03300 -1.1 -3.6 alanine acetyltransferase compare
PS417_14540 -1.1 -1.0 cytochrome C oxidase subunit III compare
PS417_18540 -1.1 -2.1 colicin V production CvpA compare
PS417_24840 -1.1 -1.0 hypothetical protein compare
PS417_17980 -1.1 -1.8 ABC transporter permease compare
PS417_18545 -1.1 -2.4 cell division protein compare
PS417_04590 -1.1 -3.1 methyltransferase compare
PS417_25390 -1.1 -3.0 MFS transporter compare
PS417_21990 -1.0 -1.7 LacI family transcriptional regulator compare
PS417_03045 -1.0 -1.4 hypothetical protein compare
PS417_13240 -1.0 -1.9 siderophore biosynthesis protein compare
PS417_22450 -1.0 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_08845 -1.0 -5.1 hypothetical protein compare
PS417_20665 -1.0 -3.3 hypothetical protein compare
PS417_08945 -1.0 -4.5 heat shock protein 90 compare
PS417_25645 -1.0 -2.9 peptidase M23 compare
PS417_19625 -1.0 -1.9 histidine kinase compare
PS417_14605 -1.0 -1.9 adenylate kinase compare
PS417_16185 -1.0 -3.4 hypothetical protein compare
PS417_15225 -1.0 -2.6 alpha/beta hydrolase compare
PS417_04380 -1.0 -1.1 ABC transporter permease compare
PS417_21710 -1.0 -2.1 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_16490 -1.0 -1.5 cell division protein FtsK compare
PS417_04280 -1.0 -2.8 carbon-nitrogen hydrolase compare
PS417_04440 -1.0 -2.1 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_24935 -1.0 -0.8 hypothetical protein compare
PS417_17865 -1.0 -2.2 2-keto-3-deoxy-L-rhamnonate aldolase compare
PS417_00195 -1.0 -1.6 hypothetical protein compare
PS417_24265 -1.0 -4.1 ABC transporter ATP-binding protein compare
PS417_02395 -0.9 -2.9 DNA topoisomerase IV subunit B compare
PS417_04390 -0.9 -2.8 toluene tolerance protein compare
PS417_03005 -0.9 -4.1 arginine decarboxylase compare
PS417_04475 -0.9 -2.6 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For motility Agar in Pseudomonas simiae WCS417

For motility Agar across organisms