Experiment set4IT085 for Variovorax sp. OAS795

Compare to:

Plant outgrowth control

200 most important genes:

  gene name fitness t score description  
ABID97_RS17265 -6.7 -4.0 two-component system response regulator OmpR compare
ABID97_RS22620 -6.6 -8.2 response regulator transcription factor compare
ABID97_RS22625 -6.3 -9.5 HAMP domain-containing sensor histidine kinase compare
ABID97_RS17635 -6.0 -4.1 presqualene diphosphate synthase HpnD compare
ABID97_RS17270 -5.4 -7.4 ATP-binding protein compare
ABID97_RS20425 -5.1 -4.5 DUF2818 family protein compare
ABID97_RS08425 -4.9 -4.7 tryptophan synthase subunit alpha compare
ABID97_RS14265 -4.7 -6.4 protease modulator HflC compare
ABID97_RS02060 -4.6 -13.9 TonB-dependent siderophore receptor compare
ABID97_RS14260 -4.6 -9.2 FtsH protease activity modulator HflK compare
ABID97_RS05275 -4.5 -2.6 anthranilate phosphoribosyltransferase compare
ABID97_RS21385 -4.5 -5.4 phosphomannomutase/phosphoglucomutase compare
ABID97_RS23015 -4.5 -9.2 glycosyltransferase family 4 protein compare
ABID97_RS07500 -4.4 -3.0 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS15590 -4.1 -2.1 disulfide bond formation protein B compare
ABID97_RS06575 -4.1 -6.6 trehalose-phosphatase compare
ABID97_RS19760 -4.0 -4.7 ROK family transcriptional regulator compare
ABID97_RS15100 -3.9 -2.7 helix-turn-helix transcriptional regulator compare
ABID97_RS23455 -3.8 -2.6 hypothetical protein compare
ABID97_RS05370 -3.8 -2.6 ATP-binding protein compare
ABID97_RS23325 -3.8 -9.1 cytochrome c biogenesis protein ResB compare
ABID97_RS08570 -3.7 -9.2 ferrous iron transporter B compare
ABID97_RS19495 -3.7 -2.6 glucan biosynthesis protein D compare
ABID97_RS05750 -3.6 -2.5 glycosyltransferase compare
ABID97_RS23025 -3.6 -14.9 sugar transferase compare
ABID97_RS05365 -3.6 -2.4 DUF4390 domain-containing protein compare
ABID97_RS18375 -3.5 -1.5 hypothetical protein compare
ABID97_RS01855 -3.5 -1.0 preprotein translocase subunit YajC compare
ABID97_RS23665 -3.5 -1.8 DNA-directed RNA polymerase subunit omega compare
ABID97_RS03805 -3.5 -1.5 ATP-binding protein compare
ABID97_RS23915 -3.5 -5.2 heme o synthase compare
ABID97_RS23220 -3.5 -2.0 glutamate synthase subunit beta compare
ABID97_RS12180 -3.4 -3.1 hypothetical protein compare
ABID97_RS23320 -3.2 -10.7 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS03800 -3.2 -2.2 O-antigen ligase family protein compare
ABID97_RS23450 -3.1 -5.2 MBOAT family protein compare
ABID97_RS23065 -3.1 -7.3 trypsin-like peptidase domain-containing protein compare
ABID97_RS05755 -3.1 -2.1 glycosyltransferase compare
ABID97_RS04765 -3.1 -2.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS08435 -3.1 -2.1 phosphoribosylanthranilate isomerase compare
ABID97_RS05740 -3.1 -2.1 glycosyltransferase family A protein compare
ABID97_RS14100 -3.1 -13.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS05250 -3.0 -10.0 anthranilate synthase component I compare
ABID97_RS16910 -3.0 -9.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS25340 -3.0 -9.5 apolipoprotein N-acyltransferase compare
ABID97_RS06520 -2.8 -1.9 SAM-dependent methyltransferase compare
ABID97_RS13860 -2.7 -7.2 hypothetical protein compare
ABID97_RS16515 -2.7 -7.3 ABC transporter permease subunit compare
ABID97_RS05765 -2.7 -2.6 UDP-glucose 4-epimerase GalE compare
ABID97_RS06365 -2.7 -1.9 TlpA disulfide reductase family protein compare
ABID97_RS05670 -2.7 -1.8 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS06345 -2.7 -4.6 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS05700 -2.6 -10.5 GDP-mannose 4,6-dehydratase compare
ABID97_RS23040 -2.6 -10.7 polysaccharide biosynthesis/export family protein compare
ABID97_RS24370 -2.6 -4.1 DUF1841 family protein compare
ABID97_RS08480 -2.5 -1.7 citrate synthase compare
ABID97_RS16785 -2.5 -1.7 transporter compare
ABID97_RS17600 -2.5 -2.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS04760 -2.5 -2.0 SPOR domain-containing protein compare
ABID97_RS16520 -2.5 -10.7 extracellular solute-binding protein compare
ABID97_RS05710 -2.5 -17.4 glycosyltransferase compare
ABID97_RS23030 -2.4 -10.6 polysaccharide biosynthesis tyrosine autokinase compare
ABID97_RS17850 -2.4 -0.9 tetratricopeptide repeat protein compare
ABID97_RS19955 -2.4 -2.1 glycerol-3-phosphate dehydrogenase compare
ABID97_RS22305 -2.3 -4.9 AzlD domain-containing protein compare
ABID97_RS02455 -2.3 -4.3 nucleotidyltransferase family protein compare
ABID97_RS26840 -2.3 -1.5 hypothetical protein compare
ABID97_RS04960 -2.3 -1.1 ATP-binding protein compare
ABID97_RS24055 -2.3 -3.6 TetR/AcrR family transcriptional regulator compare
ABID97_RS25015 -2.3 -5.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS10675 -2.3 -6.0 SurA N-terminal domain-containing protein compare
ABID97_RS27370 -2.3 -1.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
ABID97_RS00585 -2.2 -12.7 TlpA disulfide reductase family protein compare
ABID97_RS13990 -2.2 -5.7 amino acid aminotransferase compare
ABID97_RS06450 -2.2 -1.5 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS16505 -2.2 -3.3 dipeptide ABC transporter ATP-binding protein compare
ABID97_RS23910 -2.2 -6.9 SCO family protein compare
ABID97_RS14985 -2.2 -1.5 hypothetical protein compare
ABID97_RS20130 -2.2 -4.0 outer membrane protein assembly factor BamC compare
ABID97_RS05260 -2.1 -1.4 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS14665 -2.1 -4.0 UvrD-helicase domain-containing protein compare
ABID97_RS05730 -2.1 -9.5 glycosyltransferase family 2 protein compare
ABID97_RS03910 -2.1 -2.4 orotate phosphoribosyltransferase compare
ABID97_RS05705 -2.1 -13.5 GDP-mannose 4,6-dehydratase compare
ABID97_RS14105 -2.0 -2.0 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS28600 -2.0 -1.1 aspartate aminotransferase family protein compare
ABID97_RS12590 -2.0 -1.3 triphosphoribosyl-dephospho-CoA synthase compare
ABID97_RS06390 -2.0 -3.6 carbohydrate kinase family protein compare
ABID97_RS17360 -2.0 -2.1 alpha/beta hydrolase compare
ABID97_RS05280 -2.0 -1.3 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS14095 -2.0 -8.4 PAS domain S-box protein compare
ABID97_RS27900 -1.9 -2.3 DUF4242 domain-containing protein compare
ABID97_RS27980 -1.9 -2.0 alcohol dehydrogenase catalytic domain-containing protein compare
ABID97_RS04500 -1.9 -1.5 HPr(Ser) kinase/phosphatase compare
ABID97_RS23425 -1.9 -2.0 tRNA-Pro compare
ABID97_RS28000 -1.9 -1.1 NADPH-dependent FMN reductase compare
ABID97_RS25245 -1.8 -7.5 lysophospholipid acyltransferase family protein compare
ABID97_RS08430 -1.8 -1.3 tryptophan synthase subunit beta compare
ABID97_RS16510 -1.8 -6.9 ABC transporter permease compare
ABID97_RS09275 -1.8 -3.6 polyprenyl synthetase family protein compare
ABID97_RS28080 -1.8 -1.0 YbaN family protein compare
ABID97_RS06460 -1.8 -1.2 sigma 54-interacting transcriptional regulator compare
ABID97_RS05725 -1.8 -7.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABID97_RS17075 -1.8 -8.5 Kdo hydroxylase family protein compare
ABID97_RS01975 -1.8 -9.6 MltA domain-containing protein compare
ABID97_RS02525 -1.7 -6.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABID97_RS18030 -1.7 -2.3 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
ABID97_RS07065 -1.7 -8.7 glucose-6-phosphate dehydrogenase compare
ABID97_RS23920 -1.7 -7.5 COX15/CtaA family protein compare
ABID97_RS13980 -1.7 -0.8 RnfABCDGE type electron transport complex subunit B compare
ABID97_RS14090 -1.7 -0.9 response regulator transcription factor compare
ABID97_RS25525 -1.7 -3.4 LacI family DNA-binding transcriptional regulator compare
ABID97_RS13765 -1.6 -1.3 phage regulatory CII family protein compare
ABID97_RS17970 -1.6 -4.0 protein TolQ compare
ABID97_RS01455 -1.5 -8.7 AacA4 family aminoglycoside N(6')-acetyltransferase compare
ABID97_RS04030 -1.5 -3.5 FAD-binding oxidoreductase compare
ABID97_RS08775 -1.4 -2.1 ribosome small subunit-dependent GTPase A compare
ABID97_RS16690 -1.4 -3.6 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS18350 -1.4 -3.3 hypothetical protein compare
ABID97_RS23330 -1.4 -3.6 c-type cytochrome compare
ABID97_RS03680 -1.4 -5.9 lysophospholipid transporter LplT compare
ABID97_RS10405 -1.4 -1.2 efflux transporter outer membrane subunit compare
ABID97_RS03555 -1.3 -1.6 (2Fe-2S)-binding protein compare
ABID97_RS07615 -1.3 -3.7 ATP-binding protein compare
ABID97_RS14115 -1.3 -4.2 dihydrolipoyl dehydrogenase compare
ABID97_RS10910 -1.3 -2.7 MoaD/ThiS family protein compare
ABID97_RS13735 -1.3 -2.6 hypothetical protein compare
ABID97_RS14160 -1.3 -5.0 cell division protein ZapE compare
ABID97_RS28380 -1.3 -1.3 ABC transporter ATP-binding protein compare
ABID97_RS17330 -1.3 -0.9 adenosylcobinamide-GDP ribazoletransferase compare
ABID97_RS23225 -1.3 -9.6 glutamate synthase-related protein compare
ABID97_RS08855 -1.3 -3.7 thiolase family protein compare
ABID97_RS16920 -1.3 -6.2 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS13865 -1.3 -3.6 hypothetical protein compare
ABID97_RS17595 -1.3 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS10295 -1.3 -1.3 winged helix-turn-helix transcriptional regulator compare
ABID97_RS04505 -1.3 -1.4 ferric iron uptake transcriptional regulator compare
ABID97_RS11645 -1.2 -1.8 glutamine amidotransferase compare
ABID97_RS21100 -1.2 -1.1 GntR family transcriptional regulator compare
ABID97_RS23935 -1.2 -1.3 twin transmembrane helix small protein compare
ABID97_RS12910 -1.2 -3.6 ATP-binding protein compare
ABID97_RS28460 -1.2 -1.0 DUF1656 domain-containing protein compare
ABID97_RS23950 -1.2 -7.2 cytochrome c oxidase assembly protein compare
ABID97_RS16470 -1.2 -1.8 translational GTPase TypA compare
ABID97_RS08330 -1.2 -6.7 RNA polymerase sigma factor RpoE compare
ABID97_RS11545 -1.2 -0.8 branched-chain amino acid ABC transporter permease compare
ABID97_RS08390 -1.1 -5.0 beta-N-acetylhexosaminidase compare
ABID97_RS03110 -1.1 -4.2 helix-turn-helix transcriptional regulator compare
ABID97_RS23940 -1.1 -3.6 cytochrome c oxidase subunit 3 compare
ABID97_RS29375 -1.1 -1.2 VOC family protein compare
ABID97_RS17730 -1.1 -2.1 tripartite tricarboxylate transporter TctB family protein compare
ABID97_RS06160 -1.1 -5.9 GTP-binding protein compare
ABID97_RS01595 -1.1 -3.8 tRNA guanosine(34) transglycosylase Tgt compare
ABID97_RS07625 -1.1 -3.9 cytochrome o ubiquinol oxidase subunit IV compare
ABID97_RS02510 -1.1 -9.1 NADP-dependent malic enzyme compare
ABID97_RS14320 -1.1 -2.2 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
ABID97_RS29350 -1.1 -1.6 nuclear transport factor 2 family protein compare
ABID97_RS20940 -1.1 -1.5 CBS domain-containing protein compare
ABID97_RS02015 -1.1 -4.9 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABID97_RS02040 -1.1 -6.1 glutathione peroxidase compare
ABID97_RS16535 -1.1 -5.2 arginine/lysine/ornithine decarboxylase compare
ABID97_RS11920 -1.1 -1.1 DUF1003 domain-containing protein compare
ABID97_RS27720 -1.1 -1.4 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS16595 -1.1 -2.9 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS15680 -1.1 -2.1 peptidylprolyl isomerase compare
ABID97_RS15665 -1.1 -5.0 [protein-PII] uridylyltransferase compare
ABID97_RS22850 -1.1 -1.9 flavin reductase family protein compare
ABID97_RS24470 -1.1 -3.7 succinate--CoA ligase subunit alpha compare
ABID97_RS03640 -1.0 -3.6 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS15185 -1.0 -2.7 GPW/gp25 family protein compare
ABID97_RS04330 -1.0 -1.7 DMT family transporter compare
ABID97_RS03115 -1.0 -3.7 2,3-epoxybenzoyl-CoA dihydrolase compare
ABID97_RS07855 -1.0 -2.8 ABC transporter ATP-binding protein compare
ABID97_RS17135 -1.0 -5.6 RIP metalloprotease RseP compare
ABID97_RS08860 -1.0 -1.8 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS18435 -1.0 -2.7 hypothetical protein compare
ABID97_RS25115 -1.0 -5.8 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
ABID97_RS08245 -1.0 -1.2 Rne/Rng family ribonuclease compare
ABID97_RS26830 -1.0 -1.2 hypothetical protein compare
ABID97_RS11290 -1.0 -0.7 DNA repair protein RadC compare
ABID97_RS04035 -1.0 -3.7 NAD(P)/FAD-dependent oxidoreductase compare
ABID97_RS29450 -1.0 -2.3 aldehyde dehydrogenase family protein compare
ABID97_RS15175 -1.0 -1.6 phage tail protein I compare
ABID97_RS05690 -1.0 -7.7 hypothetical protein compare
ABID97_RS15575 -1.0 -1.7 sulfate ABC transporter permease subunit CysT compare
ABID97_RS07380 -1.0 -3.0 S41 family peptidase compare
ABID97_RS28030 -1.0 -1.2 branched-chain amino acid ABC transporter permease compare
ABID97_RS01755 -1.0 -4.6 pyruvate kinase compare
ABID97_RS21300 -1.0 -3.7 phosphogluconate dehydratase compare
ABID97_RS14305 -1.0 -1.3 arylesterase compare
ABID97_RS07145 -1.0 -3.1 carbohydrate kinase compare
ABID97_RS23290 -1.0 -5.2 penicillin-binding protein 1A compare
ABID97_RS03830 -1.0 -5.8 AmpG family muropeptide MFS transporter compare
ABID97_RS25405 -1.0 -5.7 16S ribosomal RNA compare
ABID97_RS24475 -1.0 -2.1 ADP-forming succinate--CoA ligase subunit beta compare
ABID97_RS23965 -0.9 -5.2 cytochrome c oxidase subunit II compare
ABID97_RS27795 -0.9 -0.7 TetR/AcrR family transcriptional regulator compare
ABID97_RS29165 -0.9 -1.6 MFS transporter compare
ABID97_RS26740 -0.9 -1.4 CoA transferase compare
ABID97_RS28020 -0.9 -1.0 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Variovorax sp. OAS795 in plant outgrowth control experiments