Experiment set4IT084 for Pseudomonas simiae WCS417

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
PS417_21570 -8.2 -5.1 flagellar basal body rod protein FlgB compare
PS417_19765 -7.4 -7.2 flagellar hook-length control protein compare
PS417_19740 -7.0 -5.6 flagellar biosynthesis protein flip compare
PS417_19730 -6.5 -3.7 flagellar biosynthesis protein FliR compare
PS417_21565 -6.4 -4.4 flagellar basal body rod protein FlgC compare
PS417_19795 -6.4 -10.1 flagellar assembly protein FliH compare
PS417_21585 -5.9 -8.1 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19880 -5.9 -8.1 flagellar basal body L-ring protein compare
PS417_20090 -5.9 -14.8 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_21595 -5.7 -4.3 flagellar biosynthesis protein FlgN compare
PS417_19695 -5.7 -7.9 flagellar biosynthesis sigma factor compare
PS417_19860 -5.3 -12.9 flagellar hook protein FlgL compare
PS417_19725 -5.3 -5.2 flagellar biosynthesis protein FlhB compare
PS417_19800 -5.3 -2.5 flagellar motor switch protein FliG compare
PS417_19870 -5.3 -4.9 flagellar rod assembly protein FlgJ compare
PS417_24835 -5.2 -7.3 hypothetical protein compare
PS417_19690 -5.2 -5.2 histidine kinase compare
PS417_21555 -5.2 -10.7 flagellar hook protein FlgE compare
PS417_19710 -5.1 -12.4 flagellar biosynthesis protein FlhA compare
PS417_19735 -5.1 -4.9 flagellar biosynthesis protein FliQ compare
PS417_20105 -5.0 -22.9 glycosyl transferase compare
PS417_19650 -5.0 -4.8 chemotaxis protein CheW compare
PS417_19745 -4.9 -5.6 flagellar assembly protein FliO compare
PS417_19825 -4.8 -8.0 ATPase AAA compare
PS417_27795 -4.7 -1.6 orotate phosphoribosyltransferase compare
PS417_19675 -4.6 -7.4 chemotaxis protein CheY compare
PS417_21575 -4.6 -5.8 chemotaxis protein compare
PS417_19850 -4.6 -11.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_20095 -4.5 -18.1 hypothetical protein compare
PS417_19705 -4.3 -3.6 flagellar biosynthesis regulator FlhF compare
PS417_06375 -4.3 -1.4 deoxycytidine triphosphate deaminase compare
PS417_14065 -4.3 -9.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19865 -4.2 -7.8 flagellar hook protein FlgK compare
PS417_19660 -4.2 -4.9 cobalamin biosynthesis protein CobQ compare
PS417_19840 -4.2 -11.4 flagellar cap protein FliD compare
PS417_19785 -4.2 -3.8 flagellar biogenesis protein compare
PS417_19350 -4.0 -5.6 GTP cyclohydrolase compare
PS417_19885 -4.0 -2.4 flagellar basal body rod protein FlgG compare
PS417_23950 -3.9 -5.1 polynucleotide phosphorylase/polyadenylase compare
PS417_05635 -3.9 -6.3 membrane protein compare
PS417_24705 -3.9 -4.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_20690 -3.7 -9.5 chemotaxis protein compare
PS417_19835 -3.6 -1.6 flagellar biosynthesis protein FliS compare
PS417_20100 -3.5 -10.9 hypothetical protein compare
PS417_18570 -3.5 -6.1 peptidoglycan-binding protein compare
PS417_20855 -3.3 -1.9 hypothetical protein compare
PS417_26990 -3.3 -2.1 RNA pyrophosphohydrolase compare
PS417_24155 -3.2 -3.8 ATP-binding protein compare
PS417_25650 -3.2 -7.2 anhydro-N-acetylmuramic acid kinase compare
PS417_19665 -3.1 -4.2 flagellar motor protein MotD compare
PS417_19790 -3.1 -3.0 ATP synthase compare
PS417_03560 -3.0 -2.9 GTP-binding protein compare
PS417_27800 -3.0 -8.5 exodeoxyribonuclease III compare
PS417_01955 -3.0 -12.6 peptidase compare
PS417_24710 -3.0 -12.5 lipoprotein compare
PS417_19820 -3.0 -6.8 histidine kinase compare
PS417_19655 -2.9 -3.3 chemotaxis protein CheW compare
PS417_22565 -2.9 -1.8 formyltetrahydrofolate deformylase compare
PS417_08125 -2.8 -1.6 prephenate dehydratase compare
PS417_23770 -2.8 -2.6 exodeoxyribonuclease V subunit alpha compare
PS417_02555 -2.7 -14.7 exoribonuclease R compare
PS417_19755 -2.7 -2.1 flagellar motor switch protein FliM compare
PS417_22815 -2.7 -9.3 permease compare
PS417_08135 -2.7 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19805 -2.7 -3.1 flagellar M-ring protein FliF compare
PS417_21480 -2.7 -2.4 23S rRNA pseudouridylate synthase compare
PS417_02975 -2.5 -7.3 3-dehydroquinate dehydratase compare
PS417_01990 -2.5 -7.4 cell division protein compare
PS417_27195 -2.5 -1.9 N-acetylglutamate synthase compare
PS417_02210 -2.4 -8.3 diguanylate cyclase compare
PS417_05975 -2.4 -2.0 chemotaxis protein CheW compare
PS417_22445 -2.4 -5.3 ATP-dependent DNA helicase RuvB compare
PS417_07620 -2.4 -2.9 beta-hexosaminidase compare
PS417_08230 -2.3 -2.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01920 -2.2 -2.6 ATP-dependent protease subunit HslV compare
PS417_19830 -2.2 -2.5 flagellar assembly protein FliT compare
PS417_16490 -2.2 -2.7 cell division protein FtsK compare
PS417_08410 -2.2 -3.6 hypothetical protein compare
PS417_04375 -2.1 -4.3 ABC transporter ATP-binding protein compare
PS417_21390 -2.1 -6.7 hypothetical protein compare
PS417_07575 -2.0 -3.5 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_25790 -2.0 -3.6 aminoglycoside phosphotransferase compare
PS417_17240 -2.0 -4.6 trigger factor compare
PS417_11705 -2.0 -8.6 cyclic peptide transporter compare
PS417_20985 -2.0 -4.1 porin compare
PS417_08245 -1.9 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_05985 -1.9 -3.0 chemotaxis protein CheY compare
PS417_02280 -1.9 -3.0 GlcNAc-PI de-N-acetylase compare
PS417_03930 -1.8 -8.2 thymidine phosphorylase compare
PS417_19955 -1.8 -2.1 hypothetical protein compare
PS417_25390 -1.8 -5.4 MFS transporter compare
PS417_22450 -1.8 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_06945 -1.8 -1.9 membrane protein compare
PS417_05815 -1.8 -5.2 recombinase RecA compare
PS417_08190 -1.8 -11.5 membrane protein compare
PS417_08225 -1.8 -5.4 acetolactate synthase compare
PS417_27870 -1.8 -3.4 ATP-dependent DNA helicase RecG compare
PS417_25775 -1.8 -7.3 lipoprotein compare
PS417_21630 -1.8 -3.7 magnesium transporter compare
PS417_22825 -1.7 -5.3 hypothetical protein compare
PS417_27585 -1.7 -3.2 diaminopimelate epimerase compare
PS417_20610 -1.7 -1.6 hypothetical protein compare
PS417_17945 -1.7 -1.5 hypothetical protein compare
PS417_04170 -1.7 -4.7 stringent starvation protein A compare
PS417_26985 -1.7 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20635 -1.7 -1.0 ABC transporter ATP-binding protein compare
PS417_00045 -1.6 -2.4 glycerol acyltransferase compare
PS417_19685 -1.6 -4.9 protein phosphatase compare
PS417_08945 -1.6 -7.9 heat shock protein 90 compare
PS417_20785 -1.6 -6.2 transcriptional regulator compare
PS417_20850 -1.6 -8.1 hypothetical protein compare
PS417_24230 -1.6 -7.6 ATP-dependent protease compare
PS417_06600 -1.6 -1.3 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_17780 -1.6 -1.8 Ais protein compare
PS417_18540 -1.6 -2.3 colicin V production CvpA compare
PS417_01915 -1.6 -1.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_08185 -1.5 -4.5 glycosyl transferase compare
PS417_27865 -1.5 -3.1 LysR family transcriptional regulator compare
PS417_06770 -1.5 -6.0 multidrug transporter compare
PS417_04590 -1.5 -7.5 methyltransferase compare
PS417_00535 -1.5 -1.5 Holliday junction resolvase compare
PS417_02395 -1.5 -4.2 DNA topoisomerase IV subunit B compare
PS417_06775 -1.5 -6.5 antibiotic transporter compare
PS417_28225 -1.4 -1.9 hypothetical protein compare
PS417_22840 -1.4 -2.3 tRNA-Met compare
PS417_24905 -1.4 -4.6 DNA-binding protein compare
PS417_19625 -1.3 -4.2 histidine kinase compare
PS417_00065 -1.3 -1.8 3-methyladenine DNA glycosylase compare
PS417_25270 -1.3 -2.2 NrdR family transcriptional regulator compare
PS417_03260 -1.3 -1.6 5S ribosomal RNA compare
PS417_04595 -1.3 -2.7 cell division protein MraZ compare
PS417_08335 -1.3 -1.6 hypothetical protein compare
PS417_19645 -1.3 -2.9 chemotaxis protein compare
PS417_25645 -1.3 -3.0 peptidase M23 compare
PS417_15495 -1.3 -0.7 FAD-dependent oxidoreductase compare
PS417_04365 -1.2 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02225 -1.2 -3.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21560 -1.2 -1.6 flagellar basal body rod modification protein FlgD compare
PS417_01620 -1.2 -3.9 preprotein translocase subunit SecB compare
PS417_08195 -1.2 -6.4 hypothetical protein compare
PS417_20665 -1.2 -4.8 hypothetical protein compare
PS417_07635 -1.2 -7.8 transcription-repair coupling factor compare
PS417_04295 -1.2 -6.2 peptidase PmbA compare
PS417_08730 -1.2 -1.9 cytochrome C compare
PS417_06515 -1.2 -9.4 beta-agarase conserved
PS417_20880 -1.2 -2.2 GntR family transcriptional regulator compare
PS417_09085 -1.2 -1.4 hypothetical protein compare
PS417_18545 -1.2 -3.8 cell division protein compare
PS417_02560 -1.1 -1.9 23S rRNA methyltransferase compare
PS417_01600 -1.1 -4.1 peptidase M23 compare
PS417_06150 -1.1 -2.2 SAM-dependent methlyltransferase compare
PS417_02475 -1.1 -2.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_15710 -1.1 -1.9 nitrate reductase compare
PS417_00550 -1.1 -1.1 hypothetical protein compare
PS417_27360 -1.1 -2.5 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_21580 -1.1 -4.6 chemotaxis protein CheW conserved
PS417_20645 -1.1 -5.4 membrane protein compare
PS417_12660 -1.1 -1.6 hypothetical protein compare
PS417_27595 -1.1 -2.3 recombinase XerC compare
PS417_00380 -1.1 -3.2 zinc ABC transporter ATP-binding protein compare
PS417_26815 -1.1 -2.0 peptidase M16 compare
PS417_20170 -1.1 -2.3 hypothetical protein compare
PS417_18025 -1.1 -1.7 cytochrome C compare
PS417_04380 -1.1 -1.5 ABC transporter permease compare
PS417_02805 -1.0 -1.4 urease subunit gamma compare
PS417_06160 -1.0 -7.4 beta-(1-3)-glucosyl transferase conserved
PS417_27065 -1.0 -4.8 hypothetical protein compare
PS417_22990 -1.0 -0.9 iron dicitrate transport regulator FecR compare
PS417_06685 -1.0 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_01145 -1.0 -1.1 taurine transporter ATP-binding subunit compare
PS417_05160 -1.0 -1.2 DNA polymerase III subunit chi compare
PS417_17215 -1.0 -3.4 peptidylprolyl isomerase compare
PS417_00920 -1.0 -3.8 diguanylate cyclase compare
PS417_01290 -1.0 -1.2 ADP-ribose diphosphatase compare
PS417_00390 -1.0 -3.2 ABC transporter substrate-binding protein compare
PS417_20650 -1.0 -5.5 hypothetical protein compare
PS417_27510 -1.0 -4.5 disulfide bond formation protein B compare
PS417_21975 -1.0 -4.8 glutamate-pyruvate aminotransferase compare
PS417_06540 -1.0 -1.4 membrane protein compare
PS417_13175 -1.0 -1.8 iron transporter compare
PS417_06730 -1.0 -1.5 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_08205 -1.0 -2.9 acetyltransferase compare
PS417_28265 -1.0 -1.9 pyridoxamine kinase compare
PS417_24115 -1.0 -1.4 hypothetical protein compare
PS417_21655 -1.0 -1.1 aspartate kinase compare
PS417_04390 -1.0 -5.6 toluene tolerance protein compare
PS417_21670 -1.0 -3.1 6,7-dimethyl-8-ribityllumazine synthase compare
PS417_01605 -0.9 -1.2 phosphoglycerate mutase compare
PS417_19520 -0.9 -2.0 transcriptional regulator compare
PS417_22700 -0.9 -1.3 RNA polymerase subunit sigma-24 compare
PS417_12565 -0.9 -2.1 2-dehydro-3-deoxygluconokinase compare
PS417_09835 -0.9 -4.2 hypothetical protein compare
PS417_20655 -0.9 -5.1 group 1 glycosyl transferase compare
PS417_23025 -0.9 -4.6 murein transglycosylase compare
PS417_15745 -0.9 -1.8 lipid carrier protein compare
PS417_26605 -0.9 -1.3 malonate decarboxylase subunit beta compare
PS417_19635 -0.9 -6.0 lipid kinase compare
PS417_09300 -0.9 -2.2 peptidylprolyl isomerase compare
PS417_22210 -0.9 -1.7 AraC family transcriptional regulator compare
PS417_25030 -0.9 -3.1 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For motility Agar in Pseudomonas simiae WCS417

For motility Agar across organisms