Experiment set4IT084 for Kangiella aquimarina DSM 16071
marine_broth_2216 with Sodium nitrite 20 mM
Group: stressMedia: marine_broth_2216 + Sodium nitrite (20 mM)
Culturing: Kang_ML4_MIT, Aerobic, at 30 (C)
By: Sean Kearney on 3/10/21
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Specific Phenotypes
For 1 genes in this experiment
For stress Sodium nitrite in Kangiella aquimarina DSM 16071
For stress Sodium nitrite across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Catechol branch of beta-ketoadipate pathway | 1 |
| Leucine Degradation and HMG-CoA Metabolism | 1 |
| Protocatechuate branch of beta-ketoadipate pathway | 1 |
| Serine-glyoxylate cycle | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Synthesis and degradation of ketone bodies
- Valine, leucine and isoleucine degradation
- Geraniol degradation
- 1- and 2-Methylnaphthalene degradation
- Butanoate metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| ketolysis | 3 | 2 | 1 |
| TCA cycle VI (Helicobacter) | 9 | 6 | 1 |