Experiment set4IT083 for Pseudomonas simiae WCS417

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
PS417_19765 -7.0 -9.6 flagellar hook-length control protein compare
PS417_21570 -6.7 -5.4 flagellar basal body rod protein FlgB compare
PS417_19880 -6.2 -7.3 flagellar basal body L-ring protein compare
PS417_19785 -6.0 -3.7 flagellar biogenesis protein compare
PS417_21585 -5.7 -9.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_24835 -5.4 -6.4 hypothetical protein compare
PS417_19745 -5.3 -6.0 flagellar assembly protein FliO compare
PS417_20090 -5.2 -16.5 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_21565 -5.2 -4.8 flagellar basal body rod protein FlgC compare
PS417_21595 -5.0 -6.0 flagellar biosynthesis protein FlgN compare
PS417_19695 -5.0 -6.9 flagellar biosynthesis sigma factor compare
PS417_19860 -4.9 -16.9 flagellar hook protein FlgL compare
PS417_19725 -4.7 -4.9 flagellar biosynthesis protein FlhB compare
PS417_19865 -4.6 -9.5 flagellar hook protein FlgK compare
PS417_19690 -4.5 -7.5 histidine kinase compare
PS417_19825 -4.5 -7.7 ATPase AAA compare
PS417_19840 -4.4 -12.3 flagellar cap protein FliD compare
PS417_19885 -4.4 -1.8 flagellar basal body rod protein FlgG compare
PS417_19740 -4.4 -6.2 flagellar biosynthesis protein flip compare
PS417_19705 -4.3 -3.7 flagellar biosynthesis regulator FlhF compare
PS417_21555 -4.2 -9.9 flagellar hook protein FlgE compare
PS417_21575 -4.1 -10.9 chemotaxis protein compare
PS417_19710 -4.1 -10.3 flagellar biosynthesis protein FlhA compare
PS417_19665 -4.1 -5.3 flagellar motor protein MotD compare
PS417_20105 -4.0 -19.0 glycosyl transferase compare
PS417_20985 -4.0 -3.9 porin compare
PS417_19850 -4.0 -10.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_05635 -4.0 -9.3 membrane protein compare
PS417_24705 -3.8 -6.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_19795 -3.8 -8.4 flagellar assembly protein FliH compare
PS417_20095 -3.8 -15.5 hypothetical protein compare
PS417_05975 -3.7 -2.2 chemotaxis protein CheW compare
PS417_14065 -3.7 -9.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19790 -3.7 -3.6 ATP synthase compare
PS417_19675 -3.7 -8.3 chemotaxis protein CheY compare
PS417_19835 -3.6 -1.7 flagellar biosynthesis protein FliS compare
PS417_07620 -3.6 -2.9 beta-hexosaminidase compare
PS417_08125 -3.5 -1.7 prephenate dehydratase compare
PS417_27795 -3.5 -1.7 orotate phosphoribosyltransferase compare
PS417_19650 -3.4 -4.7 chemotaxis protein CheW compare
PS417_18570 -3.3 -5.8 peptidoglycan-binding protein compare
PS417_20100 -3.3 -10.6 hypothetical protein compare
PS417_08135 -3.2 -7.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27800 -3.2 -8.0 exodeoxyribonuclease III compare
PS417_20690 -3.2 -9.8 chemotaxis protein compare
PS417_23770 -3.0 -2.0 exodeoxyribonuclease V subunit alpha compare
PS417_06375 -3.0 -1.4 deoxycytidine triphosphate deaminase compare
PS417_01955 -2.9 -11.7 peptidase compare
PS417_22565 -2.9 -1.9 formyltetrahydrofolate deformylase compare
PS417_19655 -2.8 -2.9 chemotaxis protein CheW compare
PS417_19755 -2.8 -2.2 flagellar motor switch protein FliM compare
PS417_19870 -2.8 -3.7 flagellar rod assembly protein FlgJ compare
PS417_08230 -2.7 -2.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_02555 -2.6 -14.2 exoribonuclease R compare
PS417_19820 -2.6 -6.9 histidine kinase compare
PS417_19660 -2.6 -3.7 cobalamin biosynthesis protein CobQ compare
PS417_22815 -2.6 -10.2 permease compare
PS417_25790 -2.5 -5.1 aminoglycoside phosphotransferase compare
PS417_24710 -2.5 -10.3 lipoprotein compare
PS417_23950 -2.4 -5.0 polynucleotide phosphorylase/polyadenylase compare
PS417_19735 -2.4 -5.4 flagellar biosynthesis protein FliQ compare
PS417_22445 -2.4 -5.0 ATP-dependent DNA helicase RuvB compare
PS417_19645 -2.4 -3.5 chemotaxis protein compare
PS417_23775 -2.4 -2.3 exodeoxyribonuclease V subunit beta compare
PS417_19730 -2.4 -1.5 flagellar biosynthesis protein FliR compare
PS417_02975 -2.3 -6.4 3-dehydroquinate dehydratase compare
PS417_19800 -2.3 -3.5 flagellar motor switch protein FliG compare
PS417_21630 -2.3 -4.3 magnesium transporter compare
PS417_07470 -2.2 -2.3 hypothetical protein compare
PS417_10245 -2.2 -2.4 hypothetical protein compare
PS417_25650 -2.1 -4.3 anhydro-N-acetylmuramic acid kinase compare
PS417_26990 -2.1 -1.9 RNA pyrophosphohydrolase compare
PS417_27870 -2.1 -5.6 ATP-dependent DNA helicase RecG compare
PS417_19350 -2.0 -6.1 GTP cyclohydrolase compare
PS417_19830 -2.0 -1.8 flagellar assembly protein FliT compare
PS417_03560 -2.0 -2.9 GTP-binding protein compare
PS417_27195 -2.0 -1.5 N-acetylglutamate synthase compare
PS417_25390 -2.0 -5.0 MFS transporter compare
PS417_20855 -1.9 -1.6 hypothetical protein compare
PS417_05815 -1.9 -6.7 recombinase RecA compare
PS417_00045 -1.9 -2.7 glycerol acyltransferase compare
PS417_09300 -1.9 -3.5 peptidylprolyl isomerase compare
PS417_04650 -1.8 -0.9 D-alanine--D-alanine ligase compare
PS417_17240 -1.7 -4.4 trigger factor compare
PS417_06770 -1.7 -7.1 multidrug transporter compare
PS417_02210 -1.7 -5.9 diguanylate cyclase compare
PS417_01990 -1.7 -7.6 cell division protein compare
PS417_24615 -1.7 -1.4 hypothetical protein compare
PS417_24155 -1.7 -2.9 ATP-binding protein compare
PS417_22825 -1.7 -6.1 hypothetical protein compare
PS417_19955 -1.7 -2.2 hypothetical protein compare
PS417_18540 -1.7 -2.4 colicin V production CvpA compare
PS417_11705 -1.6 -6.5 cyclic peptide transporter compare
PS417_16490 -1.6 -2.0 cell division protein FtsK compare
PS417_18545 -1.6 -3.5 cell division protein compare
PS417_25270 -1.6 -2.8 NrdR family transcriptional regulator compare
PS417_22450 -1.5 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_03930 -1.5 -6.8 thymidine phosphorylase compare
PS417_04080 -1.5 -2.0 peptide ABC transporter substrate-binding protein compare
PS417_19685 -1.4 -3.9 protein phosphatase compare
PS417_01915 -1.4 -1.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_26605 -1.4 -1.8 malonate decarboxylase subunit beta compare
PS417_26985 -1.4 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20785 -1.4 -5.9 transcriptional regulator compare
PS417_01620 -1.4 -2.3 preprotein translocase subunit SecB compare
PS417_02280 -1.4 -2.7 GlcNAc-PI de-N-acetylase compare
PS417_27585 -1.4 -2.9 diaminopimelate epimerase compare
PS417_05160 -1.3 -1.2 DNA polymerase III subunit chi compare
PS417_27290 -1.3 -1.4 hypothetical protein compare
PS417_01435 -1.3 -1.5 hypothetical protein compare
PS417_21390 -1.3 -6.7 hypothetical protein compare
PS417_20585 -1.3 -4.6 chemotaxis protein compare
PS417_08225 -1.3 -4.8 acetolactate synthase compare
PS417_21560 -1.3 -1.8 flagellar basal body rod modification protein FlgD compare
PS417_02720 -1.3 -1.2 TetR family transcriptional regulator compare
PS417_08410 -1.3 -2.2 hypothetical protein compare
PS417_08220 -1.3 -1.1 epimerase compare
PS417_25775 -1.3 -6.7 lipoprotein compare
PS417_21655 -1.3 -1.3 aspartate kinase compare
PS417_09470 -1.3 -1.5 hypothetical protein compare
PS417_21760 -1.3 -1.7 hypothetical protein compare
PS417_00375 -1.3 -3.6 membrane protein compare
PS417_04380 -1.3 -1.8 ABC transporter permease compare
PS417_00755 -1.3 -1.0 biofilm PGA synthesis protein PgaD compare
PS417_24115 -1.3 -2.0 hypothetical protein compare
PS417_23160 -1.3 -2.1 50S rRNA methyltransferase compare
PS417_11440 -1.3 -2.0 hypothetical protein compare
PS417_00535 -1.3 -1.1 Holliday junction resolvase compare
PS417_20850 -1.2 -5.7 hypothetical protein compare
PS417_02475 -1.2 -2.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_08245 -1.2 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01920 -1.2 -2.0 ATP-dependent protease subunit HslV compare
PS417_07575 -1.2 -4.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_00390 -1.2 -4.2 ABC transporter substrate-binding protein compare
PS417_08730 -1.2 -2.1 cytochrome C compare
PS417_08190 -1.2 -7.3 membrane protein compare
PS417_20665 -1.1 -3.4 hypothetical protein compare
PS417_21580 -1.1 -5.1 chemotaxis protein CheW conserved
PS417_15495 -1.1 -0.7 FAD-dependent oxidoreductase compare
PS417_22840 -1.1 -2.0 tRNA-Met compare
PS417_24230 -1.1 -5.8 ATP-dependent protease compare
PS417_01290 -1.1 -1.5 ADP-ribose diphosphatase compare
PS417_14515 -1.1 -1.9 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_07635 -1.1 -6.4 transcription-repair coupling factor compare
PS417_02805 -1.1 -1.5 urease subunit gamma compare
PS417_08185 -1.1 -2.9 glycosyl transferase compare
PS417_08945 -1.1 -5.8 heat shock protein 90 compare
PS417_03100 -1.1 -1.0 pilus assembly protein compare
PS417_04170 -1.1 -4.9 stringent starvation protein A compare
PS417_10655 -1.1 -2.0 LuxR family transcriptional regulator compare
PS417_02895 -1.1 -1.6 precorrin-6Y C5,15-methyltransferase compare
PS417_21480 -1.1 -0.9 23S rRNA pseudouridylate synthase compare
PS417_23205 -1.1 -3.8 transcriptional regulator compare
PS417_26260 -1.1 -1.6 hypothetical protein compare
PS417_03300 -1.0 -3.6 alanine acetyltransferase compare
PS417_09045 -1.0 -2.8 histidine kinase compare
PS417_26120 -1.0 -2.0 hypothetical protein compare
PS417_04365 -1.0 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_09085 -1.0 -1.3 hypothetical protein compare
PS417_07095 -1.0 -5.7 histidine kinase compare
PS417_06945 -1.0 -1.4 membrane protein compare
PS417_06160 -1.0 -7.0 beta-(1-3)-glucosyl transferase conserved
PS417_01285 -1.0 -2.3 haloacid dehalogenase compare
PS417_10575 -1.0 -3.1 DNA alkylation repair protein compare
PS417_15695 -1.0 -4.4 molybdenum cofactor biosynthesis protein A compare
PS417_19425 -1.0 -0.9 allantoicase compare
PS417_03260 -1.0 -2.1 5S ribosomal RNA compare
PS417_19615 -1.0 -4.5 chemotaxis protein CheW compare
PS417_07710 -1.0 -5.0 membrane protein compare
PS417_04385 -1.0 -3.5 organic solvent ABC transporter substrate-binding protein compare
PS417_23820 -1.0 -3.9 hypothetical protein compare
PS417_17125 -0.9 -3.4 transcriptional regulator compare
PS417_23755 -0.9 -1.9 membrane protein compare
PS417_08090 -0.9 -1.2 3-oxoacyl-ACP reductase compare
PS417_09325 -0.9 -3.7 peptidase S41 compare
PS417_06735 -0.9 -2.1 3-oxoadipate enol-lactonase compare
PS417_24905 -0.9 -3.7 DNA-binding protein compare
PS417_23025 -0.9 -4.6 murein transglycosylase compare
PS417_04295 -0.9 -5.0 peptidase PmbA compare
PS417_20880 -0.9 -1.6 GntR family transcriptional regulator compare
PS417_08195 -0.9 -4.7 hypothetical protein compare
PS417_25155 -0.9 -1.6 hypothetical protein compare
PS417_13620 -0.9 -1.1 thermostable hemolysin compare
PS417_17840 -0.9 -1.6 betaine-aldehyde dehydrogenase compare
PS417_23460 -0.9 -2.1 LysR family transcriptional regulator compare
PS417_00920 -0.9 -5.7 diguanylate cyclase compare
PS417_06895 -0.9 -3.1 DNA-binding protein compare
PS417_03550 -0.9 -1.8 hypothetical protein compare
PS417_12310 -0.9 -5.3 methionine synthase compare
PS417_15780 -0.9 -2.2 membrane protein compare
PS417_10405 -0.9 -0.9 filamentous hemagglutinin compare
PS417_27865 -0.9 -1.2 LysR family transcriptional regulator compare
PS417_10335 -0.9 -1.3 peroxiredoxin compare
PS417_08335 -0.9 -1.0 hypothetical protein compare
PS417_21625 -0.9 -0.8 DNA-binding protein compare
PS417_21975 -0.9 -4.7 glutamate-pyruvate aminotransferase compare
PS417_10425 -0.9 -1.5 hypothetical protein compare
PS417_05325 -0.9 -1.6 fimbrial protein compare
PS417_22060 -0.9 -1.1 hypothetical protein compare
PS417_26420 -0.9 -1.2 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For motility Agar in Pseudomonas simiae WCS417

For motility Agar across organisms