Experiment set4IT083 for Agrobacterium fabrum C58

Compare to:

R2A with Sodium cyanide 2.5 mM

200 most important genes:

  gene name fitness t score description  
Atu0141 -4.4 -2.9 cytochrome O ubiquinol oxidase subunit I compare
Atu0051 -4.1 -6.3 two component sensor kinase compare
Atu0050 -4.1 -7.3 two component response regulator compare
Atu3598 -3.8 -3.1 thiol:disulfide interchange protein compare
Atu1739 -3.5 -5.1 permease compare
Atu0142 -3.4 -6.3 cytochrome o ubiquinol oxidase subunit II compare
Atu1030 -3.3 -2.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2073 -3.2 -6.8 membrane protein compare
Atu0769 -3.2 -3.1 protoheme IX farnesyltransferase compare
Atu6098 -3.2 -1.3 transcriptional regulator, HTH family compare
Atu4346 -3.1 -4.6 hypothetical protein compare
Atu1810 -2.9 -1.4 hypothetical protein compare
Atu0039 -2.8 -2.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu1446 -2.7 -2.4 two component response regulator compare
Atu0017 -2.5 -2.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0184 -2.5 -3.7 glucokinase compare
Atu1687 -2.4 -6.5 anthranilate phosphoribosyltransferase compare
Atu4616 -2.4 -3.4 dTDP-4-dehydrorhamnose reductase compare
Atu1359 -2.4 -1.6 dnaK deletion suppressor protein compare
Atu8025 -2.3 -2.4 hypothetical protein compare
Atu1028 -2.2 -3.4 hypothetical protein compare
Atu0346 -2.1 -5.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0768 -2.1 -12.5 cytochrome-c oxidase chain I compare
Atu1470 -2.1 -2.0 Camphor resistance protein compare
Atu1688 -2.0 -4.5 indole-3-glycerol-phosphate synthase compare
Atu0767 -1.9 -5.4 cytochrome c oxidase subunit II compare
Atu4317 -1.9 -3.6 TetR family transcriptional regulator compare
Atu0190 -1.9 -6.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0040 -1.9 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0103 -1.8 -8.5 penicillin-binding protein compare
Atu2728 -1.8 -4.7 beta (1-->2) glucan export ATP-binding protein compare
Atu0043 -1.8 -2.3 imidazoleglycerol-phosphate dehydratase compare
Atu3754 -1.7 -5.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2554 -1.7 -2.2 lysyl-tRNA synthetase compare
Atu0189 -1.6 -4.5 ABC transporter, membrane spanning protein (peptide) compare
Atu1468 -1.6 -6.8 hypothetical protein compare
Atu0138 -1.6 -6.4 surfeit 1 compare
Atu1242 -1.6 -8.3 cytochrome oxidase assembly factor compare
Atu2289 -1.6 -8.2 anthranilate synthase component I and II compare
Atu1774 -1.6 -7.6 ABC transporter, substrate binding protein (peptide) compare
Atu3763 -1.6 -2.2 hypothetical protein compare
Atu1140 -1.5 -6.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1141 -1.4 -5.2 Phosphoribosylglycinamide synthetase compare
Atu3469 -1.4 -2.0 phosphoglyceromutase compare
Atu3744 -1.4 -7.9 ABC transporter permease compare
Atu3739 -1.4 -3.1 phosphoglycerate kinase compare
Atu2710 -1.4 -6.9 hypothetical protein compare
Atu4711 -1.4 -4.8 two component sensor kinase compare
Atu1354 -1.4 -1.4 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1701 -1.4 -2.9 protein-L-isoaspartate O-methyltransferase compare
Atu3755 -1.4 -3.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0188 -1.4 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu4199 -1.3 -7.2 TetR family transcriptional regulator compare
Atu3712 -1.3 -1.0 hypothetical protein compare
Atu0972 -1.2 -5.4 lipA protein compare
Atu4217 -1.2 -1.8 TetR family transcriptional regulator compare
Atu2464 -1.2 -3.1 formyltetrahydrofolate deformylase compare
Atu4773 -1.2 -2.1 two component response regulator compare
Atu1307 -1.2 -4.0 dihydroorotase compare
Atu1075 -1.2 -4.6 amidophosphoribosyltransferase compare
Atu2684 -1.2 -0.9 hypothetical protein compare
Atu1845 -1.1 -2.9 phosphoribosylformylglycinamidine synthase I compare
Atu3727 -1.1 -4.3 hypothetical protein compare
Atu0070 -1.1 -5.5 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu0647 -1.1 -4.4 phosphoribosylamine--glycine ligase compare
Atu5146 -1.1 -1.7 hypothetical protein compare
Atu1308 -1.1 -4.8 aspartate carbamoyl transferase catalytic subunit compare
Atu6036 -1.1 -0.9 entry-exclusion protein compare
Atu1867 -1.1 -5.7 glutamate racemase compare
Atu1467 -1.1 -2.3 hypothetical protein compare
Atu0401 -1.1 -3.6 fructokinase compare
Atu0976 -1.1 -2.4 cycL protein compare
Atu3732 -1.0 -5.6 hemolysin compare
Atu2239 -1.0 -2.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu5125 -1.0 -2.8 GntR family transcriptional regulator compare
Atu0535 -1.0 -3.7 hypothetical protein compare
Atu6189 -0.9 -0.9 protein secretion chaperone compare
Atu1327 -0.9 -2.3 NADH-ubiquinone oxidoreductase compare
Atu0565 -0.9 -2.9 hypothetical protein compare
Atu1254 -0.9 -1.4 transcriptional regulator, ArsR family compare
Atu3008 -0.9 -1.3 hypothetical protein compare
Atu3001 -0.9 -1.5 hypothetical protein compare
Atu3429 -0.9 -1.5 hypothetical protein compare
Atu4527 -0.9 -1.7 hypothetical protein compare
Atu2057 -0.9 -1.8 DNA helicase II compare
Atu0421 -0.9 -1.2 ABC transporter, membrane spanning protein compare
Atu2578 -0.9 -1.8 cAMP-dependent protein kinase regulatory subunit compare
Atu3510 -0.9 -2.4 amidohydrolase compare
Atu2406 -0.9 -2.3 hypothetical protein compare
Atu0322 -0.9 -3.9 enoyl CoA hydratase compare
Atu2193 -0.9 -1.0 hypothetical protein compare
Atu0538 -0.9 -2.5 hypothetical protein compare
Atu4884 -0.9 -2.9 hypothetical protein compare
Atu3634 -0.9 -4.5 penicillin-binding protein dacf precursor compare
Atu1333 -0.9 -2.2 outer membrane protein compare
Atu4567 -0.9 -3.6 ROK family transcriptional regulator compare
Atu1225 -0.9 -1.7 hypothetical protein compare
Atu0973 -0.9 -3.1 cycH protein compare
Atu1163 -0.9 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1685 -0.9 -0.9 hypothetical protein compare
Atu1694 -0.9 -1.5 hypothetical protein compare
Atu1850 -0.8 -2.1 phosphoribosylformylglycinamidine synthetase II compare
Atu0319 -0.8 -1.0 ubiquinone biosynthesis protein compare
Atu1683 -0.8 -2.2 hypothetical protein compare
Atu4144 -0.8 -1.1 hypothetical protein compare
Atu4873 -0.8 -4.1 TetR family transcriptional regulator compare
Atu2439 -0.8 -0.8 hypothetical protein compare
Atu4792 -0.8 -1.1 hypothetical protein compare
Atu0842 -0.8 -1.1 hypothetical protein compare
Atu3784 -0.8 -6.9 glutamate synthase large subunit compare
Atu2798 -0.8 -2.5 precorrin-6y methyltransferase compare
Atu0272 -0.8 -2.9 transcriptional regulator, MarR family compare
Atu4446 -0.8 -4.1 hypothetical protein compare
Atu1364 -0.8 -3.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0062 -0.8 -4.2 transcriptional regulator, ROK family compare
Atu3597 -0.8 -3.6 3-hydroxybutyryl-CoA dehydrogenase compare
Atu4161 -0.8 -1.7 hypothetical protein compare
Atu0354 -0.8 -1.7 ferric uptake regulator compare
Atu5046 -0.8 -2.0 hypothetical protein compare
Atu1592 -0.8 -2.3 hypothetical protein compare
Atu1182 -0.8 -1.4 hypothetical protein compare
Atu4896 -0.8 -2.3 acetyltransferase compare
Atu0464 -0.8 -3.1 hypothetical protein compare
Atu6131 -0.8 -2.6 TraR Antiactivator compare
Atu2067 -0.8 -1.0 hypothetical protein compare
Atu4061 -0.8 -2.4 exopolysaccharide production repressor protein compare
Atu0795 -0.8 -1.9 hypothetical protein compare
Atu0185 -0.7 -3.0 methylglyoxal synthase compare
Atu0496 -0.7 -1.7 hypothetical protein compare
Atu2028 -0.7 -1.9 transcriptional regulator, ArsR family compare
Atu0400 -0.7 -2.2 orotate phosphoribosyltransferase compare
Atu1444 -0.7 -3.0 nitrogen regulation protein compare
Atu8138 -0.7 -1.2 hypothetical protein compare
Atu1573 -0.7 -1.3 hypothetical protein compare
Atu4232 -0.7 -3.1 GntR family transcriptional regulator compare
Atu6153 -0.7 -1.2 conserved hypothetical protein compare
Atu0780 -0.7 -4.1 hypothetical protein compare
Atu0971 -0.7 -2.5 two component sensor kinase compare
Atu3783 -0.7 -4.6 glutamate synthase subunit beta compare
Atu1056 -0.7 -1.9 hypothetical protein compare
Atu1387 -0.7 -2.7 transcriptional regulator, GntR family compare
Atu1844 -0.7 -1.9 Phosphoribosylformylglycinamidine synthetase compare
Atu4866 -0.7 -4.2 hypothetical protein compare
Atu1380 -0.7 -2.4 zinc metallopeptidase compare
Atu2063 -0.7 -1.5 hypothetical protein compare
Atu3468 -0.7 -0.8 hypothetical protein compare
Atu4451 -0.7 -3.2 mannitol 2-dehydrogenase compare
Atu0726 -0.7 -3.2 ring hydroxylating dioxygenase, alpha-subunit compare
Atu0904 -0.6 -2.3 hypothetical protein compare
Atu5155 -0.6 -1.9 MarR family transcriptional regulator compare
Atu3026 -0.6 -2.7 short chain dehydrogenase compare
Atu5115 -0.6 -1.0 hypothetical protein compare
Atu2766 -0.6 -5.4 NAD-glutamate dehydrogenase compare
Atu4166 -0.6 -1.6 UDP-glucose 4-epimerase compare
Atu1904 -0.6 -1.3 transcriptional regulator compare
Atu0115 -0.6 -0.7 hypothetical protein compare
Atu0528 -0.6 -1.5 large conductance mechanosensitive channel protein compare
Atu4290 -0.6 -1.8 hypothetical protein compare
Atu5098 -0.6 -3.1 hypothetical protein compare
Atu0953 -0.6 -0.8 hypothetical protein compare
Atu1326 -0.6 -2.5 acetyltransferase compare
Atu4468 -0.6 -3.0 iron transport ABC transporter permease compare
Atu2682 -0.6 -2.6 hypothetical protein compare
Atu2207 -0.6 -2.3 two component sensor kinase compare
Atu8115 -0.6 -3.4 Hypothetical Protein compare
Atu8190 -0.6 -2.0 hypothetical protein compare
Atu0101 -0.6 -1.3 cytochrome c compare
Atu4840 -0.6 -2.6 hypothetical protein compare
Atu1173 -0.6 -3.1 MFS permease compare
Atu0206 -0.6 -1.2 hypothetical protein compare
Atu1542 -0.6 -2.0 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1530 -0.6 -3.1 nitrogen fixation protein FixG compare
Atu2660 -0.6 -2.3 hypothetical protein compare
Atu2457 -0.6 -2.6 hypothetical protein compare
Atu0071 -0.6 -3.9 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu1229 -0.6 -2.8 hypothetical protein compare
Atu0470 -0.6 -1.5 hypothetical protein compare
Atu3394 -0.6 -1.8 iron ABC transporter ATPase compare
Atu4881 -0.6 -3.9 hypothetical protein compare
Atu2657 -0.6 -1.3 hypothetical protein compare
Atu1021 -0.6 -1.3 outer membrane protein compare
Atu0458 -0.6 -3.7 hypothetical protein compare
Atu0399 -0.6 -2.4 dihydroorotase compare
Atu5047 -0.6 -1.9 hypothetical protein compare
Atu1103 -0.6 -1.5 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2370 -0.6 -3.7 hypothetical protein compare
Atu4841 -0.6 -3.4 DeoR family transcriptional regulator compare
Atu0503 -0.6 -3.8 enoyl-CoA hydratase compare
Atu1801 -0.6 -1.0 hypothetical protein compare
Atu3032 -0.6 -2.5 hypothetical protein compare
Atu5468 -0.6 -0.8 hypothetical protein compare
Atu0205 -0.6 -3.5 methylmalonate-semialdehyde dehydrogenase compare
Atu0590 -0.6 -3.0 transcriptional regulator repressor compare
Atu4814 -0.6 -3.4 acetyltransferase compare
Atu4148 -0.6 -1.7 UDP-glucuronic acid epimerase compare
Atu8054 -0.6 -0.4 hypothetical protein compare
Atu4159 -0.6 -1.8 AsnC family transcriptional regulator compare
Atu1529 -0.5 -2.6 nitrogen fixation protein FixH compare
Atu3697 -0.5 -2.5 ATP-dependent protease LA 2 compare
Atu0943 -0.5 -1.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Sodium cyanide in Agrobacterium fabrum C58

For stress Sodium cyanide across organisms