Experiment set4IT083 for Agrobacterium fabrum C58

Compare to:

R2A with Sodium cyanide 2.5 mM

Group: stress
Media: R2A + Sodium cyanide (2.5 mM)
Culturing: Agro_ML11, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 28 (C), shaken=700 rpm
By: Hans Carlson and Mitchell Thompson on 22-Jun-21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 2 G11

Specific Phenotypes

For 3 genes in this experiment

For stress Sodium cyanide in Agrobacterium fabrum C58

For stress Sodium cyanide across organisms

SEED Subsystems

Subsystem #Specific
Biogenesis of cytochrome c oxidases 1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
Peptidoglycan Biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) 8 8 1
UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) 8 7 1
peptidoglycan biosynthesis I (meso-diaminopimelate containing) 12 11 1
peptidoglycan biosynthesis III (mycobacteria) 15 11 1
peptidoglycan biosynthesis II (staphylococci) 17 12 1
peptidoglycan biosynthesis IV (Enterococcus faecium) 17 12 1
peptidoglycan biosynthesis V (β-lactam resistance) 17 11 1