Experiment set4IT081 for Agrobacterium fabrum C58

Compare to:

R2A with EDTA 0.25 mM

200 most important genes:

  gene name fitness t score description  
Atu0434 -6.5 -4.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1030 -4.0 -2.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2710 -3.7 -10.4 hypothetical protein compare
Atu6098 -3.6 -1.4 transcriptional regulator, HTH family compare
Atu4498 -3.4 -10.0 hypothetical protein compare
Atu4469 -2.9 -5.2 iron ABC transporter permease compare
Atu4499 -2.9 -8.2 hypothetical protein compare
Atu3598 -2.7 -2.5 thiol:disulfide interchange protein compare
Atu2684 -2.7 -2.2 hypothetical protein compare
Atu4773 -2.6 -2.8 two component response regulator compare
Atu4108 -2.4 -14.1 ribonuclease D compare
Atu4471 -2.4 -11.5 ABC transporter substrate-binding protein compare
Atu0017 -2.3 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2057 -2.2 -3.2 DNA helicase II compare
Atu4468 -2.2 -9.5 iron transport ABC transporter permease compare
Atu1028 -2.1 -3.6 hypothetical protein compare
Atu1687 -1.9 -6.3 anthranilate phosphoribosyltransferase compare
Atu4470 -1.9 -6.2 iron ABC transporter ATPase compare
Atu0972 -1.8 -6.3 lipA protein compare
Atu2207 -1.8 -5.3 two component sensor kinase compare
Atu0031 -1.7 -2.1 PTS system, IIA component compare
Atu4711 -1.6 -5.5 two component sensor kinase compare
Atu4616 -1.6 -2.6 dTDP-4-dehydrorhamnose reductase compare
Atu5115 -1.6 -1.6 hypothetical protein compare
Atu0184 -1.5 -1.9 glucokinase compare
Atu1891 -1.5 -2.6 cobalamin biosynthesis protein compare
Atu4567 -1.5 -5.2 ROK family transcriptional regulator compare
Atu2504 -1.5 -6.8 transcriptional regulator, GntR family compare
Atu0769 -1.5 -1.8 protoheme IX farnesyltransferase compare
Atu1163 -1.4 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0977 -1.3 -3.2 serine protease DO-like protease compare
Atu3739 -1.3 -2.8 phosphoglycerate kinase compare
Atu1874 -1.3 -2.0 RecA protein compare
Atu2289 -1.2 -6.9 anthranilate synthase component I and II compare
Atu2802 -1.2 -5.2 precorrin-8X methylmutase compare
Atu3469 -1.2 -2.2 phosphoglyceromutase compare
Atu3518 -1.2 -6.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu4317 -1.2 -2.2 TetR family transcriptional regulator compare
Atu2728 -1.1 -3.2 beta (1-->2) glucan export ATP-binding protein compare
Atu2798 -1.1 -3.3 precorrin-6y methyltransferase compare
Atu0103 -1.1 -6.5 penicillin-binding protein compare
Atu4072 -1.1 -1.7 nodulation protein N compare
Atu1468 -1.1 -5.0 hypothetical protein compare
Atu2238 -1.1 -5.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2796 -1.1 -3.7 precorrin-4 C11-methyltransferase compare
Atu1110 -1.1 -2.7 cytosol aminopeptidase compare
Atu2799 -1.1 -4.0 precorrin-6x reductase compare
Atu2809 -1.1 -5.3 cobalamin biosynthesis protein compare
Atu6189 -1.1 -1.3 protein secretion chaperone compare
Atu6114 -1.0 -0.9 hypothetical protein compare
Atu2808 -1.0 -6.1 cobyric acid synthase compare
Atu1355 -1.0 -3.6 hypothetical protein compare
Atu8082 -1.0 -2.0 hypothetical protein compare
Atu2807 -1.0 -4.9 cob(I)alamin adenosyltransferase compare
Atu2237 -1.0 -4.1 cytochrome c1 compare
Atu2267 -1.0 -4.4 hypothetical protein compare
Atu0400 -1.0 -2.6 orotate phosphoribosyltransferase compare
Atu3707 -1.0 -2.9 phosphoserine aminotransferase compare
Atu8087 -1.0 -1.0 putative peptidoglycan binding protein compare
Atu2793 -1.0 -3.6 cobyrinic acid a,c-diamide synthase compare
Atu0062 -1.0 -5.5 transcriptional regulator, ROK family compare
Atu0886 -1.0 -1.4 hypothetical protein compare
Atu0322 -1.0 -3.8 enoyl CoA hydratase compare
Atu3012 -1.0 -1.8 hypothetical protein compare
Atu0723 -0.9 -1.8 FAD dependent oxidoreductase compare
Atu1359 -0.9 -1.0 dnaK deletion suppressor protein compare
Atu2804 -0.9 -5.6 cobaltochelatase subunit compare
Atu4217 -0.9 -0.7 TetR family transcriptional regulator compare
Atu3014 -0.9 -2.6 hypothetical protein compare
Atu3754 -0.9 -3.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0298 -0.9 -4.1 orotidine 5 compare
Atu2803 -0.9 -3.1 Cobalamin biosynthesis associated protein compare
Atu2805 -0.9 -3.1 cobalamin synthesis protein compare
Atu0486 -0.9 -3.3 dihydroorotate dehydrogenase compare
Atu8034 -0.9 -1.4 hypothetical protein compare
Atu1344 -0.9 -1.4 hypothetical protein compare
Atu1223 -0.8 -1.1 hypothetical protein compare
Atu5164 -0.8 -0.8 type IV secretion protein AvhB3 compare
Atu1302 -0.8 -2.7 hypothetical protein compare
Atu2073 -0.8 -3.0 membrane protein compare
Atu0501 -0.8 -5.5 acyl-CoA dehydrogenase compare
Atu2113 -0.8 -1.6 N-acetylmuramoyl-L-alanine amidase compare
Atu3120 -0.8 -0.8 hypothetical protein compare
Atu1688 -0.8 -2.5 indole-3-glycerol-phosphate synthase compare
Atu2795 -0.8 -4.2 cobalamin biosynthetic protein compare
Atu0346 -0.8 -2.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0837 -0.8 -5.0 transcriptional regulator, MarR family compare
Atu0401 -0.8 -3.0 fructokinase compare
Atu4144 -0.8 -1.1 hypothetical protein compare
Atu4890 -0.8 -1.5 IS426 transposase compare
Atu1686 -0.8 -4.9 peptidyl-prolyl cis-trans isomerse D compare
Atu1307 -0.8 -3.3 dihydroorotase compare
Atu1075 -0.8 -3.1 amidophosphoribosyltransferase compare
Atu4882 -0.8 -2.4 hypothetical protein compare
Atu2800 -0.8 -1.3 precorrin-3B C17-methyltransferase compare
Atu8159 -0.8 -1.8 hypothetical protein compare
Atu3468 -0.8 -0.9 hypothetical protein compare
Atu0361 -0.8 -1.7 transcriptional regulator compare
Atu2484 -0.8 -1.1 hypothetical protein compare
Atu2083 -0.8 -2.5 DNA repair protein RecN compare
Atu1774 -0.8 -4.3 ABC transporter, substrate binding protein (peptide) compare
Atu0399 -0.8 -3.6 dihydroorotase compare
Atu0093 -0.8 -2.4 Recombination protein compare
Atu1844 -0.8 -2.4 Phosphoribosylformylglycinamidine synthetase compare
Atu0976 -0.8 -1.3 cycL protein compare
Atu1850 -0.7 -2.3 phosphoribosylformylglycinamidine synthetase II compare
Atu0470 -0.7 -1.9 hypothetical protein compare
Atu3144 -0.7 -2.7 GntR family transcriptional regulator compare
Atu0205 -0.7 -3.9 methylmalonate-semialdehyde dehydrogenase compare
Atu0690 -0.7 -1.0 hypothetical protein compare
Atu0941 -0.7 -0.7 hypothetical protein compare
Atu5468 -0.7 -1.7 hypothetical protein compare
Atu1542 -0.7 -2.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1446 -0.7 -1.7 two component response regulator compare
Atu4418 -0.7 -2.7 glutaryl-CoA dehydrogenase compare
Atu1902 -0.7 -3.2 transketolase compare
Atu1127 -0.7 -1.6 molybdopterin converting factor small subunit compare
Atu3634 -0.7 -2.6 penicillin-binding protein dacf precursor compare
Atu0777 -0.7 -0.7 hypothetical protein compare
Atu3392 -0.7 -1.8 methyltransferase compare
Atu3593 -0.7 -3.3 hypothetical protein compare
Atu0502 -0.7 -3.2 acetyl-CoA acetyltransferase compare
Atu1213 -0.7 -1.3 hypothetical protein compare
Atu1057 -0.7 -1.7 ADP-Ribose Pyrophosphatase compare
Atu3755 -0.6 -1.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1467 -0.6 -2.3 hypothetical protein compare
Atu4446 -0.6 -3.5 hypothetical protein compare
Atu1140 -0.6 -2.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0025 -0.6 -1.3 hypothetical protein compare
Atu0947 -0.6 -2.0 transcriptional regulator, AsnC family compare
Atu3388 -0.6 -4.4 iron ABC transporter ATPase compare
Atu1845 -0.6 -2.0 phosphoribosylformylglycinamidine synthase I compare
Atu2660 -0.6 -2.4 hypothetical protein compare
Atu4093 -0.6 -2.1 hypothetical protein compare
Atu0503 -0.6 -4.4 enoyl-CoA hydratase compare
Atu0040 -0.6 -0.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu8190 -0.6 -3.1 hypothetical protein compare
Atu1182 -0.6 -1.4 hypothetical protein compare
Atu0467 -0.6 -1.4 hypothetical protein compare
Atu1241 -0.6 -1.0 hypothetical protein compare
Atu3045 -0.6 -2.1 hypothetical protein compare
Atu3579 -0.6 -1.4 lactoylglutathione lyase compare
Atu0201 -0.6 -1.4 hypothetical protein compare
Atu1750 -0.6 -2.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu0464 -0.6 -3.7 hypothetical protein compare
Atu0188 -0.6 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu1077 -0.6 -1.7 DNA repair protein compare
Atu0726 -0.6 -3.9 ring hydroxylating dioxygenase, alpha-subunit compare
Atu1354 -0.6 -0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1373 -0.6 -3.2 hypothetical protein compare
Atu3394 -0.6 -2.0 iron ABC transporter ATPase compare
Atu0598 -0.6 -3.8 phosphogluconate dehydratase compare
Atu3485 -0.6 -3.8 short chain dehydrogenase compare
Atu5431 -0.6 -3.2 hypothetical protein compare
Atu2726 -0.6 -4.6 pyruvate carboxylase compare
Atu0638 -0.6 -1.0 hypothetical protein compare
Atu5160 -0.6 -1.9 transcriptional regulator protein compare
Atu5157 -0.6 -2.0 hypothetical protein compare
Atu2248 -0.6 -1.7 hypothetical protein compare
Atu8023 -0.6 -1.4 hypothetical protein compare
Atu1308 -0.6 -2.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0419 -0.6 -1.6 two component sensor kinase compare
Atu0535 -0.6 -2.2 hypothetical protein compare
Atu0189 -0.6 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu1620 -0.6 -3.3 triosephosphate isomerase compare
Atu4617 -0.6 -3.7 dTDP-D-glucose-4,6-dehydratase compare
Atu1286 -0.6 -3.1 hypothetical protein compare
Atu4854 -0.6 -3.1 hypothetical protein compare
Atu8020 -0.6 -1.7 hypothetical protein compare
Atu3461 -0.6 -1.1 GntR family transcriptional regulator compare
Atu3466 -0.6 -2.1 ArsR family transcriptional regulator compare
Atu2325 -0.6 -2.6 hypothetical protein compare
Atu2616 -0.6 -3.6 hypothetical protein compare
Atu0566 -0.6 -1.2 hypothetical protein compare
Atu0190 -0.6 -3.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu5125 -0.6 -2.0 GntR family transcriptional regulator compare
Atu0272 -0.6 -2.1 transcriptional regulator, MarR family compare
Atu8126 -0.6 -2.7 putative phage tail protein I compare
Atu6186 -0.5 -2.2 virA/G regulated protein compare
Atu4166 -0.5 -1.1 UDP-glucose 4-epimerase compare
Atu3963 -0.5 -2.5 GntR family transcriptional regulator compare
Atu3018 -0.5 -2.6 hypothetical protein compare
Atu1387 -0.5 -1.0 transcriptional regulator, GntR family compare
Atu8036 -0.5 -1.5 protein YBGT-like protein compare
Atu2801 -0.5 -1.3 precorrin-2 C20 methyltransferase compare
Atu3395 -0.5 -3.4 iron (III ABC transporter permease ABC transporter permease compare
Atu2640 -0.5 -2.2 hypothetical protein compare
Atu0073 -0.5 -2.2 recF-like protein compare
Atu4618 -0.5 -3.4 dTDP-rhamnose-3,5-epimerase compare
Atu6138 -0.5 -2.3 Repressor of the acc and arc operons compare
Atu2740 -0.5 -1.7 transcriptional regulator, GntR family compare
Atu0939 -0.5 -1.9 PemI protein compare
Atu4451 -0.5 -3.0 mannitol 2-dehydrogenase compare
Atu3179 -0.5 -3.1 ABC transporter permease compare
Atu4223 -0.5 -1.3 sarcosine oxidase delta subunit compare
Atu0152 -0.5 -0.6 hypothetical protein compare
Atu1588 -0.5 -2.7 homoserine dehydrogenase compare
Atu0237 -0.5 -1.6 hypothetical protein compare
Atu4866 -0.5 -3.4 hypothetical protein compare
Atu6033 -0.5 -2.2 conjugal transfer protein compare


Specific Phenotypes

For 9 genes in this experiment

For stress EDTA in Agrobacterium fabrum C58

For stress EDTA across organisms