Experiment set4IT080 for Pseudomonas simiae WCS417

Compare to:

LB with Bacitracin 2 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_24835 -4.0 -6.5 hypothetical protein compare
PS417_23770 -3.0 -2.1 exodeoxyribonuclease V subunit alpha compare
PS417_24155 -2.8 -4.1 ATP-binding protein compare
PS417_02280 -2.5 -2.2 GlcNAc-PI de-N-acetylase compare
PS417_08125 -2.5 -1.9 prephenate dehydratase compare
PS417_27795 -2.2 -1.9 orotate phosphoribosyltransferase compare
PS417_19425 -2.1 -1.8 allantoicase compare
PS417_02210 -2.1 -10.4 diguanylate cyclase compare
PS417_27245 -2.0 -4.0 aminotransferase DegT compare
PS417_19675 -1.9 -6.1 chemotaxis protein CheY compare
PS417_27800 -1.7 -6.8 exodeoxyribonuclease III compare
PS417_04650 -1.7 -2.0 D-alanine--D-alanine ligase compare
PS417_05985 -1.7 -3.2 chemotaxis protein CheY compare
PS417_05975 -1.7 -2.2 chemotaxis protein CheW compare
PS417_23950 -1.6 -4.2 polynucleotide phosphorylase/polyadenylase compare
PS417_16490 -1.6 -2.8 cell division protein FtsK compare
PS417_06375 -1.6 -1.3 deoxycytidine triphosphate deaminase compare
PS417_00650 -1.5 -1.4 LysR family transcriptional regulator compare
PS417_02555 -1.5 -11.3 exoribonuclease R compare
PS417_23915 -1.5 -5.2 pantoate--beta-alanine ligase compare
PS417_21655 -1.5 -1.9 aspartate kinase compare
PS417_22450 -1.4 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_06945 -1.4 -1.9 membrane protein compare
PS417_02270 -1.4 -4.3 carbamoyltransferase compare
PS417_05815 -1.4 -5.6 recombinase RecA compare
PS417_26695 -1.3 -1.3 uracil phosphoribosyltransferase compare
PS417_22445 -1.3 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_03930 -1.3 -7.9 thymidine phosphorylase compare
PS417_27870 -1.3 -4.8 ATP-dependent DNA helicase RecG compare
PS417_27865 -1.3 -2.6 LysR family transcriptional regulator compare
PS417_06680 -1.2 -7.6 nuclease PIN compare
PS417_26730 -1.2 -1.6 pyrroline-5-carboxylate reductase compare
PS417_02975 -1.2 -4.4 3-dehydroquinate dehydratase compare
PS417_17945 -1.2 -1.4 hypothetical protein compare
PS417_04585 -1.2 -1.9 hypothetical protein compare
PS417_04365 -1.1 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19625 -1.1 -4.4 histidine kinase compare
PS417_07095 -1.1 -5.5 histidine kinase compare
PS417_06730 -1.1 -1.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_11400 -1.1 -1.1 phosphoglycerate mutase compare
PS417_21630 -1.0 -3.1 magnesium transporter compare
PS417_08580 -1.0 -4.9 histidine kinase compare
PS417_10305 -1.0 -2.2 hypothetical protein compare
PS417_26990 -1.0 -1.4 RNA pyrophosphohydrolase compare
PS417_27195 -1.0 -1.1 N-acetylglutamate synthase compare
PS417_25225 -1.0 -1.9 MFS transporter compare
PS417_24710 -1.0 -5.0 lipoprotein compare
PS417_27585 -1.0 -1.3 diaminopimelate epimerase compare
PS417_08410 -1.0 -2.6 hypothetical protein compare
PS417_05535 -1.0 -1.9 Fis family transcriptional regulator compare
PS417_04290 -0.9 -3.5 hypothetical protein compare
PS417_00510 -0.9 -1.2 membrane protein compare
PS417_09470 -0.9 -1.6 hypothetical protein compare
PS417_20855 -0.9 -1.8 hypothetical protein compare
PS417_22565 -0.9 -1.3 formyltetrahydrofolate deformylase compare
PS417_17490 -0.9 -2.3 ABC transporter ATP-binding protein compare
PS417_19620 -0.9 -2.1 hypothetical protein compare
PS417_15885 -0.9 -1.4 GCN5 family acetyltransferase compare
PS417_05120 -0.9 -2.6 RNA polymerase subunit sigma-24 compare
PS417_20700 -0.9 -6.5 cbb3-type cytochrome c oxidase subunit I compare
PS417_17240 -0.9 -2.5 trigger factor compare
PS417_19645 -0.9 -1.8 chemotaxis protein compare
PS417_24135 -0.8 -2.0 hypothetical protein compare
PS417_23580 -0.8 -1.4 peptidylprolyl isomerase compare
PS417_08220 -0.8 -0.9 epimerase compare
PS417_17125 -0.8 -2.6 transcriptional regulator compare
PS417_02630 -0.8 -1.8 NAD synthetase compare
PS417_12990 -0.8 -2.0 nucleoside hydrolase compare
PS417_24500 -0.8 -2.7 DEAD/DEAH box helicase compare
PS417_22205 -0.8 -4.9 potassium transporter TrkH compare
PS417_22840 -0.8 -1.6 tRNA-Met compare
PS417_19655 -0.8 -4.2 chemotaxis protein CheW compare
PS417_02225 -0.8 -2.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_26295 -0.8 -1.9 gamma-butyrobetaine dioxygenase compare
PS417_02880 -0.8 -1.9 copper chaperone compare
PS417_23015 -0.8 -2.3 NGG1p interacting factor 3 protein, NIF3 compare
PS417_20585 -0.8 -4.3 chemotaxis protein compare
PS417_09010 -0.8 -1.8 phosphohistidine phosphatase compare
PS417_19605 -0.8 -1.3 hypothetical protein compare
PS417_11520 -0.8 -2.4 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_08135 -0.8 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27135 -0.8 -0.9 glutamine synthetase compare
PS417_18755 -0.8 -1.5 CrtK compare
PS417_20705 -0.7 -3.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_27705 -0.7 -1.6 amino acid dehydrogenase compare
PS417_10655 -0.7 -2.2 LuxR family transcriptional regulator compare
PS417_14240 -0.7 -2.4 isochorismatase compare
PS417_10575 -0.7 -1.2 DNA alkylation repair protein compare
PS417_00080 -0.7 -4.9 potassium transporter peripheral membrane component compare
PS417_26815 -0.7 -1.5 peptidase M16 compare
PS417_21955 -0.7 -2.1 dehydrogenase compare
PS417_22190 -0.7 -4.0 diguanylate cyclase compare
PS417_11180 -0.7 -2.3 TetR family transcriptional regulator compare
PS417_08250 -0.7 -1.8 competence protein ComEA compare
PS417_26635 -0.7 -1.9 hypothetical protein compare
PS417_13175 -0.7 -1.8 iron transporter compare
PS417_06620 -0.7 -1.5 hypothetical protein compare
PS417_19350 -0.7 -2.2 GTP cyclohydrolase compare
PS417_06075 -0.7 -1.4 hypothetical protein compare
PS417_02255 -0.7 -1.6 lipopolysaccharide kinase compare
PS417_12030 -0.7 -2.5 LysR family transcriptional regulator compare
PS417_08170 -0.7 -4.1 capsular biosynthesis protein compare
PS417_23900 -0.7 -4.3 poly(A) polymerase compare
PS417_27675 -0.7 -2.5 xanthine phosphoribosyltransferase compare
PS417_24935 -0.7 -0.8 hypothetical protein compare
PS417_08130 -0.7 -0.7 aspartate aminotransferase compare
PS417_27075 -0.7 -3.2 thiol-disulfide isomerase compare
PS417_19650 -0.7 -2.4 chemotaxis protein CheW compare
PS417_23160 -0.7 -1.1 50S rRNA methyltransferase compare
PS417_21680 -0.7 -2.1 succinylglutamate desuccinylase compare
PS417_21015 -0.7 -1.6 EstX protein compare
PS417_21430 -0.7 -1.3 3-oxoacyl-ACP synthase compare
PS417_03800 -0.7 -1.9 pilus assembly protein compare
PS417_15540 -0.6 -1.2 NUDIX hydrolase compare
PS417_26145 -0.6 -1.7 hypothetical protein compare
PS417_12755 -0.6 -2.0 RND transporter compare
PS417_00345 -0.6 -2.1 copper-binding protein compare
PS417_08090 -0.6 -1.1 3-oxoacyl-ACP reductase compare
PS417_13075 -0.6 -1.1 hypothetical protein compare
PS417_02720 -0.6 -0.9 TetR family transcriptional regulator compare
PS417_09210 -0.6 -1.1 TetR family transcriptional regulator compare
PS417_02560 -0.6 -1.7 23S rRNA methyltransferase compare
PS417_27425 -0.6 -3.9 exopolyphosphatase compare
PS417_03260 -0.6 -1.6 5S ribosomal RNA compare
PS417_13590 -0.6 -2.0 histidine kinase compare
PS417_14870 -0.6 -2.7 transporter compare
PS417_06120 -0.6 -2.6 hypothetical protein compare
PS417_20785 -0.6 -2.7 transcriptional regulator compare
PS417_09615 -0.6 -2.1 glycosyl transferase family 1 compare
PS417_10040 -0.6 -0.9 MFS transporter compare
PS417_22210 -0.6 -1.2 AraC family transcriptional regulator compare
PS417_12565 -0.6 -1.5 2-dehydro-3-deoxygluconokinase compare
PS417_19195 -0.6 -2.0 hypothetical protein compare
PS417_02415 -0.6 -2.3 phosphoserine phosphatase compare
PS417_04380 -0.6 -1.2 ABC transporter permease compare
PS417_12400 -0.6 -1.9 oxidoreductase compare
PS417_11015 -0.6 -2.0 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_11670 -0.6 -1.6 multidrug transporter MATE compare
PS417_07845 -0.6 -1.7 transcriptional regulator compare
PS417_15045 -0.6 -2.0 cupin compare
PS417_19935 -0.6 -2.3 hypothetical protein compare
PS417_17995 -0.6 -2.2 hypothetical protein compare
PS417_01285 -0.6 -1.1 haloacid dehalogenase compare
PS417_20755 -0.6 -2.1 membrane protein compare
PS417_02695 -0.6 -1.5 protein hupE compare
PS417_02485 -0.6 -2.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_15095 -0.6 -2.4 hypothetical protein compare
PS417_06540 -0.6 -1.3 membrane protein compare
PS417_10870 -0.6 -1.7 GABA permease compare
PS417_10480 -0.6 -1.0 glutathione S-transferase compare
PS417_20715 -0.6 -1.9 cytochrome Cbb3 compare
PS417_13305 -0.6 -0.9 hypothetical protein compare
PS417_13895 -0.6 -1.6 chemotaxis protein CheB compare
PS417_15750 -0.6 -1.2 protease compare
PS417_20170 -0.6 -1.9 hypothetical protein compare
PS417_25015 -0.6 -1.9 fimbria A protein compare
PS417_15085 -0.6 -2.8 ATPase AAA compare
PS417_01290 -0.5 -1.1 ADP-ribose diphosphatase compare
PS417_24905 -0.5 -3.4 DNA-binding protein compare
PS417_06205 -0.5 -3.4 methionine aminopeptidase compare
PS417_21915 -0.5 -1.3 LysR family transcriptional regulator compare
PS417_24460 -0.5 -1.5 hypothetical protein compare
PS417_01850 -0.5 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_14940 -0.5 -1.3 LysR family transcriptional regulator compare
PS417_20985 -0.5 -1.7 porin compare
PS417_05365 -0.5 -1.1 FAD-binding protein compare
PS417_08545 -0.5 -0.8 aromatic ring-opening dioxygenase LigB compare
PS417_26985 -0.5 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_28355 -0.5 -2.7 cardiolipin synthetase compare
PS417_14980 -0.5 -0.6 universal stress protein UspA compare
PS417_17440 -0.5 -1.1 beta-lactamase compare
PS417_14515 -0.5 -1.2 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_16750 -0.5 -1.7 ABC transporter ATP-binding protein compare
PS417_16555 -0.5 -1.0 cupin compare
PS417_01885 -0.5 -1.8 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_12520 -0.5 -1.5 hypothetical protein compare
PS417_05165 -0.5 -1.5 cytosol aminopeptidase compare
PS417_05040 -0.5 -1.9 amino acid dehydrogenase compare
PS417_17120 -0.5 -1.8 protein kinase compare
PS417_19190 -0.5 -1.6 BolA family transcriptional regulator compare
PS417_05650 -0.5 -2.4 leucyl-tRNA synthetase compare
PS417_23095 -0.5 -0.7 exodeoxyribonuclease compare
PS417_00535 -0.5 -1.4 Holliday junction resolvase compare
PS417_27005 -0.5 -0.7 membrane protein compare
PS417_18885 -0.5 -1.6 GntR family transcriptional regulator compare
PS417_11865 -0.5 -2.0 xylose isomerase compare
PS417_14155 -0.5 -1.9 branched-chain amino acid ABC transporter permease compare
PS417_27100 -0.5 -2.2 phosphohydrolase compare
PS417_17000 -0.5 -1.4 MerR family transcriptional regulator compare
PS417_20025 -0.5 -1.0 alpha-ribazole phosphatase compare
PS417_19800 -0.5 -1.2 flagellar motor switch protein FliG compare
PS417_13205 -0.5 -0.9 isochorismate-pyruvate lyase compare
PS417_03045 -0.5 -0.8 hypothetical protein compare
PS417_25320 -0.5 -3.2 dTDP-4-dehydrorhamnose reductase compare
PS417_14925 -0.5 -1.5 2-methylcitrate dehydratase compare
PS417_12585 -0.5 -3.3 acriflavine resistance protein B compare
PS417_22690 -0.5 -1.7 phosphogluconate dehydratase compare
PS417_26370 -0.5 -2.5 RNA helicase compare
PS417_19635 -0.5 -3.4 lipid kinase compare
PS417_26520 -0.5 -2.0 amino acid ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress Bacitracin across organisms