Experiment set4IT078 for Pseudomonas simiae WCS417

Compare to:

LB with Phosphomycin disodium salt 0.003 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_06245 -3.9 -2.7 zinc metallopeptidase RseP compare
PS417_07620 -3.3 -1.7 beta-hexosaminidase compare
PS417_00755 -3.2 -1.4 biofilm PGA synthesis protein PgaD compare
PS417_25650 -3.2 -4.0 anhydro-N-acetylmuramic acid kinase compare
PS417_23825 -2.7 -7.0 penicillin-binding protein compare
PS417_25645 -2.6 -5.3 peptidase M23 compare
PS417_22815 -2.5 -6.9 permease compare
PS417_08245 -2.4 -1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_05975 -2.4 -2.0 chemotaxis protein CheW compare
PS417_20080 -2.3 -3.3 peptidase P60 compare
PS417_25790 -2.1 -5.9 aminoglycoside phosphotransferase compare
PS417_20985 -2.1 -2.8 porin compare
PS417_06375 -2.0 -1.2 deoxycytidine triphosphate deaminase compare
PS417_23025 -2.0 -6.0 murein transglycosylase compare
PS417_17215 -1.9 -4.4 peptidylprolyl isomerase compare
PS417_27800 -1.9 -6.1 exodeoxyribonuclease III compare
PS417_27705 -1.8 -2.1 amino acid dehydrogenase compare
PS417_08230 -1.8 -1.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_14350 -1.7 -6.0 multidrug DMT transporter permease conserved
PS417_15110 -1.7 -5.1 protein BatD compare
PS417_02210 -1.6 -7.1 diguanylate cyclase compare
PS417_15105 -1.6 -6.2 membrane protein compare
PS417_00045 -1.6 -2.3 glycerol acyltransferase compare
PS417_26985 -1.6 -4.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05500 -1.5 -3.8 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_19425 -1.5 -1.2 allantoicase compare
PS417_07120 -1.5 -5.0 RNA polymerase sigma-H factor compare
PS417_20130 -1.4 -6.8 dehydrogenase compare
PS417_05520 -1.4 -7.8 histidine kinase compare
PS417_03935 -1.4 -1.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_27795 -1.4 -1.2 orotate phosphoribosyltransferase compare
PS417_04650 -1.4 -0.8 D-alanine--D-alanine ligase compare
PS417_10985 -1.4 -1.1 NADH:flavin oxidoreductase compare
PS417_12660 -1.3 -1.6 hypothetical protein compare
PS417_09210 -1.3 -1.5 TetR family transcriptional regulator compare
PS417_15095 -1.3 -4.0 hypothetical protein compare
PS417_21625 -1.3 -1.1 DNA-binding protein compare
PS417_24155 -1.3 -1.7 ATP-binding protein compare
PS417_16195 -1.3 -1.0 AraC family transcriptional regulator compare
PS417_02405 -1.3 -6.7 hypothetical protein conserved
PS417_08185 -1.3 -3.1 glycosyl transferase compare
PS417_06540 -1.2 -1.4 membrane protein compare
PS417_00705 -1.2 -1.2 MarR family transcriptional regulator compare
PS417_02695 -1.2 -2.1 protein hupE compare
PS417_27870 -1.2 -2.9 ATP-dependent DNA helicase RecG compare
PS417_15090 -1.2 -1.6 hypothetical protein compare
PS417_18455 -1.2 -2.3 hypothetical protein compare
PS417_08205 -1.2 -2.2 acetyltransferase compare
PS417_11865 -1.2 -3.2 xylose isomerase compare
PS417_08220 -1.2 -0.9 epimerase compare
PS417_20825 -1.2 -2.1 drug:proton antiporter compare
PS417_27290 -1.1 -1.7 hypothetical protein compare
PS417_16490 -1.1 -1.8 cell division protein FtsK compare
PS417_19800 -1.1 -1.8 flagellar motor switch protein FliG compare
PS417_03930 -1.1 -6.3 thymidine phosphorylase compare
PS417_24835 -1.1 -3.6 hypothetical protein compare
PS417_03705 -1.1 -3.4 2-alkenal reductase compare
PS417_04410 -1.1 -1.9 hypothetical protein compare
PS417_05525 -1.1 -3.3 Fis family transcriptional regulator compare
PS417_15915 -1.1 -1.2 hypothetical protein compare
PS417_27940 -1.1 -1.0 type VI secretion protein compare
PS417_20785 -1.0 -5.5 transcriptional regulator compare
PS417_25225 -1.0 -2.1 MFS transporter compare
PS417_08190 -1.0 -6.3 membrane protein compare
PS417_23820 -1.0 -4.5 hypothetical protein compare
PS417_10040 -1.0 -1.2 MFS transporter compare
PS417_07840 -1.0 -2.4 hypothetical protein compare
PS417_03145 -1.0 -2.0 acetyl-CoA acetyltransferase compare
PS417_15085 -1.0 -2.1 ATPase AAA compare
PS417_08180 -1.0 -5.1 glycosyl transferase compare
PS417_05815 -1.0 -3.1 recombinase RecA compare
PS417_28265 -1.0 -2.4 pyridoxamine kinase compare
PS417_06030 -1.0 -2.6 hypothetical protein compare
PS417_02720 -1.0 -1.0 TetR family transcriptional regulator compare
PS417_20650 -1.0 -5.1 hypothetical protein compare
PS417_15100 -1.0 -0.8 BatB protein compare
PS417_23580 -1.0 -1.3 peptidylprolyl isomerase compare
PS417_24460 -1.0 -1.4 hypothetical protein compare
PS417_14980 -1.0 -0.8 universal stress protein UspA compare
PS417_12870 -1.0 -1.4 enoyl-CoA hydratase compare
PS417_07560 -0.9 -1.2 universal stress protein UspA compare
PS417_14515 -0.9 -1.6 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_23755 -0.9 -1.3 membrane protein compare
PS417_10025 -0.9 -1.2 bacteriophage lambda NinG family protein compare
PS417_01620 -0.9 -1.9 preprotein translocase subunit SecB compare
PS417_05985 -0.9 -1.8 chemotaxis protein CheY compare
PS417_06710 -0.9 -1.2 beta-ketoadipyl CoA thiolase compare
PS417_16320 -0.9 -2.1 protein tyrosine phosphatase compare
PS417_05510 -0.9 -3.7 alpha/beta hydrolase compare
PS417_23135 -0.9 -1.4 GTP-binding protein compare
PS417_05010 -0.9 -1.1 IclR family transcriptional regulator compare
PS417_14995 -0.9 -2.8 serine/threonine protein kinase compare
PS417_28250 -0.9 -5.6 cell wall assembly protein compare
PS417_24710 -0.9 -3.7 lipoprotein compare
PS417_01570 -0.9 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_14805 -0.8 -1.6 AraC family transcriptional regulator compare
PS417_01210 -0.8 -3.3 hypothetical protein compare
PS417_13445 -0.8 -1.1 D-aminopeptidase compare
PS417_22190 -0.8 -4.2 diguanylate cyclase compare
PS417_10675 -0.8 -0.9 TetR family transcriptional regulator compare
PS417_07245 -0.8 -2.0 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_14345 -0.8 -3.0 LysR family transcriptional regulator compare
PS417_22895 -0.8 -3.9 tyrosine recombinase XerD compare
PS417_25280 -0.8 -3.0 methyltransferase compare
PS417_22840 -0.8 -1.5 tRNA-Met compare
PS417_03260 -0.8 -1.8 5S ribosomal RNA compare
PS417_20645 -0.8 -4.5 membrane protein compare
PS417_10655 -0.8 -2.3 LuxR family transcriptional regulator compare
PS417_11100 -0.8 -2.8 MocE compare
PS417_02155 -0.8 -2.5 chemotaxis protein compare
PS417_07950 -0.8 -2.4 MFS transporter compare
PS417_08200 -0.8 -1.7 hypothetical protein compare
PS417_10335 -0.8 -2.0 peroxiredoxin compare
PS417_08410 -0.8 -1.5 hypothetical protein compare
PS417_09625 -0.8 -2.0 sugar ABC transporter substrate-binding protein compare
PS417_04275 -0.8 -5.5 hypothetical protein compare
PS417_13145 -0.8 -1.8 50S ribosomal protein L21 compare
PS417_13820 -0.8 -4.4 UDP-glucose 6-dehydrogenase compare
PS417_23775 -0.7 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_08195 -0.7 -3.4 hypothetical protein compare
PS417_13075 -0.7 -0.9 hypothetical protein compare
PS417_05160 -0.7 -0.9 DNA polymerase III subunit chi compare
PS417_16400 -0.7 -1.5 NAD(P)H-quinone oxidoreductase compare
PS417_27300 -0.7 -0.6 cell division protein ZapA compare
PS417_24705 -0.7 -1.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_05850 -0.7 -3.3 LysR family transcriptional regulator compare
PS417_25220 -0.7 -3.0 iron-hydroxamate ABC transporter substrate-binding protein compare
PS417_13790 -0.7 -2.2 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_06465 -0.7 -1.8 transcriptional regulator compare
PS417_19675 -0.7 -3.4 chemotaxis protein CheY compare
PS417_06530 -0.7 -1.4 membrane protein compare
PS417_26750 -0.7 -2.2 homoserine acetyltransferase compare
PS417_11410 -0.7 -1.8 phospholipase compare
PS417_05105 -0.7 -2.1 membrane protein compare
PS417_13795 -0.7 -2.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_19285 -0.7 -1.3 ankyrin compare
PS417_08685 -0.7 -1.1 flagellar hook-length control protein FliK compare
PS417_21690 -0.7 -2.9 N-succinylarginine dihydrolase compare
PS417_16370 -0.7 -4.0 chemotaxis protein CheY compare
PS417_05830 -0.7 -2.5 hypothetical protein compare
PS417_20485 -0.7 -2.0 hypothetical protein compare
PS417_15380 -0.7 -2.4 hypothetical protein compare
PS417_14260 -0.7 -1.5 phosphate ABC transporter permease compare
PS417_02950 -0.7 -1.4 tRNA-dihydrouridine synthase B compare
PS417_25765 -0.7 -1.0 transcriptional regulator compare
PS417_19010 -0.7 -2.2 LysR family transcriptional regulator compare
PS417_16720 -0.7 -0.8 membrane protein compare
PS417_14905 -0.7 -1.5 C4-dicarboxylate ABC transporter compare
PS417_05505 -0.7 -3.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_13510 -0.7 -0.7 polyketide cyclase compare
PS417_23360 -0.7 -0.7 hypothetical protein compare
PS417_23005 -0.7 -1.8 XRE family transcriptional regulator compare
PS417_01600 -0.7 -3.4 peptidase M23 compare
PS417_14395 -0.7 -1.7 fe2+ zn2+ uptake regulation protein compare
PS417_14540 -0.7 -0.9 cytochrome C oxidase subunit III compare
PS417_09220 -0.7 -2.3 cupin compare
PS417_06400 -0.7 -2.2 succinylglutamate desuccinylase compare
PS417_05475 -0.7 -2.0 arginase compare
PS417_22210 -0.7 -1.0 AraC family transcriptional regulator compare
PS417_26520 -0.7 -2.6 amino acid ABC transporter substrate-binding protein compare
PS417_28220 -0.7 -1.4 LysR family transcriptional regulator compare
PS417_12520 -0.7 -1.7 hypothetical protein compare
PS417_09010 -0.7 -1.4 phosphohistidine phosphatase compare
PS417_15365 -0.7 -1.4 diaminopimelate epimerase compare
PS417_11670 -0.7 -1.5 multidrug transporter MATE compare
PS417_22950 -0.6 -1.8 preQ0 transporter compare
PS417_18965 -0.6 -1.6 dienelactone hydrolase compare
PS417_18920 -0.6 -1.9 hypothetical protein compare
PS417_27945 -0.6 -1.1 type VI secretion protein ImpA compare
PS417_14605 -0.6 -1.2 adenylate kinase compare
PS417_19090 -0.6 -2.5 hypothetical protein compare
PS417_21760 -0.6 -0.9 hypothetical protein compare
PS417_22315 -0.6 -1.6 DNA-3-methyladenine glycosylase compare
PS417_15725 -0.6 -2.3 nitrate/nitrite transporter NarK compare
PS417_23485 -0.6 -2.3 antibiotic biosynthesis monooxygenase compare
PS417_10275 -0.6 -1.1 histidine kinase compare
PS417_14085 -0.6 -2.1 hypothetical protein compare
PS417_13140 -0.6 -0.9 oxidoreductase compare
PS417_27610 -0.6 -2.6 hypothetical protein compare
PS417_01965 -0.6 -1.1 fimbriae biosynthesis protein compare
PS417_20665 -0.6 -2.8 hypothetical protein compare
PS417_27435 -0.6 -2.8 polyphosphate kinase compare
PS417_12190 -0.6 -1.7 microcin ABC transporter ATP-binding protein compare
PS417_02415 -0.6 -1.6 phosphoserine phosphatase compare
PS417_02225 -0.6 -1.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21065 -0.6 -1.1 3-methylitaconate isomerase compare
PS417_15470 -0.6 -1.7 saccharopine dehydrogenase compare
PS417_19625 -0.6 -1.8 histidine kinase compare
PS417_13425 -0.6 -1.4 cupin compare
PS417_16965 -0.6 -2.2 hypothetical protein compare
PS417_22445 -0.6 -1.7 ATP-dependent DNA helicase RuvB compare
PS417_00370 -0.6 -0.7 hypothetical protein compare
PS417_27935 -0.6 -0.7 type VI secretion protein compare
PS417_27665 -0.6 -1.7 diguanylate cyclase compare
PS417_19930 -0.6 -1.6 DNA methyltransferase compare
PS417_02560 -0.6 -1.3 23S rRNA methyltransferase compare
PS417_08225 -0.6 -1.8 acetolactate synthase compare
PS417_01215 -0.6 -3.6 membrane protein compare
PS417_08165 -0.6 -3.4 UDP-glucose 4-epimerase compare
PS417_12910 -0.6 -1.9 alanine racemase compare


Specific Phenotypes

For 9 genes in this experiment

For stress Phosphomycin disodium salt in Pseudomonas simiae WCS417

For stress Phosphomycin disodium salt across organisms