Experiment set4IT078 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine_broth_2216 with Sodium nitrite 20 mM

200 most detrimental genes:

  gene name fitness t score description  
CA264_06355 +3.4 28.8 ergothioneine biosynthesis protein EgtB compare
CA264_10920 +3.1 23.2 helix-turn-helix-type transcriptional regulator compare
CA264_19545 +2.9 16.3 oxidoreductase compare
CA264_19540 +2.8 19.6 hypothetical protein compare
CA264_07245 +2.7 15.3 hypothetical protein compare
CA264_02025 +2.6 16.0 nitroreductase compare
CA264_19005 +2.5 16.7 SusC/RagA family TonB-linked outer membrane protein compare
CA264_19555 +2.4 10.3 GNAT family N-acetyltransferase compare
CA264_19150 +2.2 16.4 TonB dependent receptor compare
CA264_01385 +2.2 14.4 iron ABC transporter substrate-binding protein compare
CA264_18135 +2.2 11.5 ABC transporter ATP-binding protein compare
CA264_13015 +2.1 15.6 sensor histidine kinase compare
CA264_12150 +2.0 7.1 hypothetical protein compare
CA264_01065 +2.0 7.4 MarR family transcriptional regulator compare
CA264_02685 +2.0 10.5 hypothetical protein compare
CA264_19215 +1.9 9.7 RNA polymerase subunit sigma compare
CA264_01390 +1.9 11.8 iron ABC transporter permease compare
CA264_03395 +1.8 10.3 phospholipase compare
CA264_10365 +1.7 1.5 hypothetical protein compare
CA264_14345 +1.6 7.9 hypothetical protein compare
CA264_09365 +1.5 9.1 4-hydroxybutyrate CoA-transferase compare
CA264_08075 +1.5 4.9 gliding motility-associated ABC transporter permease subunit GldF compare
CA264_09090 +1.4 7.7 NADPH dehydrogenase NamA compare
CA264_14350 +1.4 7.9 hemolysin compare
CA264_02030 +1.4 4.2 hypothetical protein compare
CA264_00295 +1.3 4.3 hypothetical protein compare
CA264_06095 +1.2 2.8 hypothetical protein compare
CA264_14440 +1.2 6.5 glutamine cyclotransferase compare
CA264_07030 +1.2 7.0 UDP-glucose 4-epimerase compare
CA264_09955 +1.2 1.8 hypothetical protein compare
CA264_13070 +1.2 7.8 ribonuclease bn compare
CA264_08945 +1.1 5.3 type 1 glutamine amidotransferase domain-containing protein compare
CA264_00250 +1.1 7.1 hypothetical protein compare
CA264_12175 +1.1 2.7 hypothetical protein compare
CA264_09085 +1.1 8.0 sugar hydrolase compare
CA264_14550 +1.1 9.4 cell surface protein SprA compare
CA264_15215 +1.0 5.5 hypothetical protein compare
CA264_16410 +1.0 7.9 hypothetical protein compare
CA264_14815 +1.0 1.8 transcriptional regulator compare
CA264_14635 +1.0 5.5 hypothetical protein compare
CA264_17885 +1.0 2.5 GAF domain-containing protein compare
CA264_05005 +1.0 8.2 colicin receptor compare
CA264_14805 +1.0 2.3 DNA-binding protein compare
CA264_00660 +1.0 6.5 hypothetical protein compare
CA264_05830 +1.0 1.6 hypothetical protein compare
CA264_12155 +1.0 1.8 histidine phosphatase family protein compare
CA264_17735 +1.0 6.9 antibiotic ABC transporter ATP-binding protein compare
CA264_01155 +1.0 2.4 Zn-dependent protease compare
CA264_21435 +0.9 1.4 hypothetical protein compare
CA264_17565 +0.9 1.4 hypothetical protein compare
CA264_15205 +0.9 5.1 RNA pseudouridine synthase compare
CA264_03590 +0.9 2.4 hypothetical protein compare
CA264_17485 +0.9 1.3 cytochrome C biosynthesis protein compare
CA264_17510 +0.9 4.3 pseudouridylate synthase compare
CA264_17500 +0.9 4.0 molecular chaperone DnaK compare
CA264_19010 +0.9 6.3 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_15230 +0.9 3.9 hypothetical protein compare
CA264_01265 +0.9 1.7 50S ribosomal protein L9 compare
CA264_06475 +0.9 0.5 hypothetical protein compare
CA264_11725 +0.9 2.1 hypothetical protein compare
CA264_14355 +0.9 3.1 hypothetical protein compare
CA264_02690 +0.9 3.9 rhodanese compare
CA264_05535 +0.8 5.8 hypothetical protein compare
CA264_01790 +0.8 1.4 hypothetical protein compare
CA264_21040 +0.8 3.0 transcriptional regulator compare
CA264_16340 +0.8 6.0 hypothetical protein compare
CA264_02440 +0.8 2.3 vitamin K epoxide reductase compare
CA264_07375 +0.8 4.5 NADH-dependent alcohol dehydrogenase compare
CA264_21420 +0.8 2.8 hypothetical protein compare
CA264_11865 +0.8 3.2 hypothetical protein compare
CA264_20945 +0.8 2.2 hypothetical protein compare
CA264_09155 +0.8 3.1 anion permease compare
CA264_20010 +0.8 1.3 gliding motility lipoprotein GldH compare
CA264_20465 +0.8 1.3 aspartate carbamoyltransferase compare
CA264_14360 +0.8 3.1 gamma carbonic anhydrase family protein compare
CA264_18655 +0.8 2.9 transcriptional repressor compare
CA264_20120 +0.7 2.0 hypothetical protein compare
CA264_18060 +0.7 4.0 hypothetical protein compare
CA264_00455 +0.7 3.2 PorT-like protein compare
CA264_09700 +0.7 1.0 hypothetical protein compare
CA264_05655 +0.7 4.7 FAD-binding protein compare
CA264_12005 +0.7 2.5 hypothetical protein compare
CA264_13170 +0.7 3.0 hypothetical protein compare
CA264_15010 +0.7 1.2 gliding motility lipoprotein GldD compare
CA264_08105 +0.7 2.2 NupC/NupG family nucleoside CNT transporter compare
CA264_06440 +0.7 4.2 thioesterase compare
CA264_08950 +0.7 4.2 short-chain dehydrogenase/reductase compare
CA264_16105 +0.7 2.5 3-hydroxybutyryl-CoA dehydrogenase compare
CA264_15770 +0.7 4.8 FAD-dependent oxidoreductase compare
CA264_19675 +0.7 2.9 RNA pseudouridine synthase compare
CA264_10875 +0.7 1.8 MerP protein compare
CA264_12795 +0.7 1.9 hypothetical protein compare
CA264_13535 +0.7 3.5 AraC family transcriptional regulator compare
CA264_00780 +0.7 1.8 glyoxalase compare
CA264_06035 +0.7 3.0 hypothetical protein compare
CA264_01090 +0.7 2.7 hypothetical protein compare
CA264_00190 +0.6 5.4 RagB/SusD family nutrient uptake outer membrane protein compare
CA264_17190 +0.6 0.8 methionine-R-sulfoxide reductase compare
CA264_14970 +0.6 1.7 gliding motility lipoprotein GldB compare
CA264_12165 +0.6 3.7 hypothetical protein compare
CA264_09710 +0.6 1.3 transcriptional regulator compare
CA264_08140 +0.6 2.9 oxidoreductase compare
CA264_06405 +0.6 4.8 VWA domain-containing protein compare
CA264_17320 +0.6 5.0 hypothetical protein compare
CA264_18055 +0.6 4.2 hypothetical protein compare
CA264_14160 +0.6 1.2 HupE / UreJ protein compare
CA264_12940 +0.6 2.7 alcohol dehydrogenase compare
CA264_03850 +0.6 2.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase compare
CA264_19875 +0.6 1.1 RNA methyltransferase compare
CA264_12785 +0.6 1.5 Rieske (2Fe-2S) protein compare
CA264_00170 +0.6 2.2 ATP:cob(I)alamin adenosyltransferase compare
CA264_17430 +0.6 2.9 DUF2807 domain-containing protein compare
CA264_00040 +0.6 4.4 hypothetical protein compare
CA264_11620 +0.6 4.3 hypothetical protein compare
CA264_19625 +0.6 4.6 DNA mismatch repair protein MutS compare
CA264_17755 +0.6 3.5 ABC transporter compare
CA264_15785 +0.6 1.0 hypothetical protein compare
CA264_17235 +0.6 1.6 gliding motility lipoprotein GldJ compare
CA264_01425 +0.6 4.8 RelA/SpoT family protein compare
CA264_19145 +0.6 4.0 hypothetical protein compare
CA264_00015 +0.6 2.6 hypothetical protein compare
CA264_12185 +0.6 2.6 5'/3'-nucleotidase SurE compare
CA264_05225 +0.6 3.1 MBL fold metallo-hydrolase compare
CA264_21225 +0.6 1.2 hypothetical protein compare
CA264_09935 +0.6 1.8 conjugative transposon protein TraN compare
CA264_07565 +0.6 1.3 four-helix bundle copper-binding protein compare
CA264_01100 +0.6 2.3 Clp protease ClpS compare
CA264_21255 +0.6 2.2 hypothetical protein compare
CA264_06420 +0.5 2.4 hypothetical protein compare
CA264_15935 +0.5 2.3 hypothetical protein compare
CA264_21065 +0.5 1.1 transcriptional regulator compare
CA264_06335 +0.5 1.1 Na+/H+ antiporter subunit G compare
CA264_10680 +0.5 1.2 hypothetical protein compare
CA264_16365 +0.5 0.6 gliding motility protein GldL compare
CA264_12160 +0.5 1.3 transcriptional regulator compare
CA264_16360 +0.5 1.3 gliding motility protein GldM compare
CA264_03835 +0.5 1.3 hypothetical protein compare
CA264_21045 +0.5 1.2 hypothetical protein compare
CA264_12595 +0.5 1.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
CA264_19195 +0.5 3.8 hypothetical protein compare
CA264_09950 +0.5 2.7 conjugative transposon protein TraJ compare
CA264_10715 +0.5 1.5 hypothetical protein compare
CA264_18525 +0.5 2.1 hypothetical protein compare
CA264_08805 +0.5 1.5 inosine/xanthosine triphosphatase compare
CA264_10710 +0.5 2.3 response regulator compare
CA264_16835 +0.5 1.4 hypothetical protein compare
CA264_06070 +0.5 0.9 kinase compare
CA264_00195 +0.5 2.8 ribonuclease HII compare
CA264_15290 +0.5 4.0 alpha/beta hydrolase compare
CA264_20375 +0.5 1.2 hypothetical protein compare
CA264_00675 +0.5 3.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA264_14395 +0.5 2.7 endonuclease III compare
CA264_03485 +0.5 1.9 dodecin compare
CA264_05685 +0.5 3.2 RNA polymerase subunit sigma-70 compare
CA264_00010 +0.5 2.1 hypothetical protein compare
CA264_00150 +0.5 3.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA264_02265 +0.5 2.3 phosphonate ABC transporter ATP-binding protein compare
CA264_12600 +0.5 2.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
CA264_14125 +0.5 2.5 endonuclease V compare
CA264_20325 +0.5 2.6 cell envelope biogenesis protein OmpA compare
CA264_06575 +0.5 3.1 DUF4199 domain-containing protein compare
CA264_18300 +0.5 4.0 peptidase M28 compare
CA264_13025 +0.5 1.7 hypothetical protein compare
CA264_10895 +0.5 2.2 hypothetical protein compare
CA264_15135 +0.5 2.5 TIGR00730 family Rossman fold protein compare
CA264_12860 +0.5 1.2 hypothetical protein compare
CA264_02635 +0.5 2.4 hypothetical protein compare
CA264_17685 +0.5 2.8 hypothetical protein compare
CA264_19080 +0.5 2.8 hypothetical protein compare
CA264_19795 +0.5 2.5 hypothetical protein compare
CA264_19710 +0.5 1.7 short-chain dehydrogenase compare
CA264_09875 +0.5 3.9 hypothetical protein compare
CA264_12780 +0.5 1.9 DUF3221 domain-containing protein compare
CA264_16130 +0.5 1.5 TetR family transcriptional regulator compare
CA264_10570 +0.5 2.2 hypothetical protein compare
CA264_16905 +0.5 2.2 hypothetical protein compare
CA264_20050 +0.5 1.8 hypothetical protein compare
CA264_09160 +0.5 3.3 MBL fold metallo-hydrolase compare
CA264_01935 +0.5 3.0 DNA-binding response regulator compare
CA264_14515 +0.5 2.6 peptidase M23 compare
CA264_19135 +0.5 1.7 hypothetical protein compare
CA264_20625 +0.5 3.5 methylcrotonoyl-CoA carboxylase compare
CA264_15745 +0.5 0.4 tRNA-Arg compare
CA264_15550 +0.5 1.1 GNAT family N-acetyltransferase compare
CA264_16150 +0.5 0.7 acyl carrier protein compare
CA264_02855 +0.5 1.8 metal-dependent phosphohydrolase compare
CA264_07150 +0.5 1.7 elongation factor 4 compare
CA264_15765 +0.5 1.9 T9SS C-terminal target domain-containing protein compare
CA264_12580 +0.5 2.6 hypothetical protein compare
CA264_07800 +0.5 2.0 hypothetical protein compare
CA264_21640 +0.5 2.0 DDE transposase compare
CA264_00175 +0.5 3.3 branched chain amino acid aminotransferase compare
CA264_09280 +0.5 2.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CA264_18650 +0.5 2.4 thioesterase compare
CA264_11605 +0.4 2.1 hypothetical protein compare
CA264_05135 +0.4 3.0 amidohydrolase compare
CA264_14935 +0.4 1.9 sec-independent protein translocase TatC compare
CA264_09570 +0.4 2.7 amino acid permease compare
CA264_20700 +0.4 2.5 hypothetical protein compare
CA264_18215 +0.4 1.5 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium nitrite in Pontibacter actiniarum KMM 6156, DSM 19842

For stress Sodium nitrite across organisms