Experiment set4IT077 for Pseudomonas simiae WCS417

Compare to:

LB with Phosphomycin disodium salt 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_00755 -3.3 -1.5 biofilm PGA synthesis protein PgaD compare
PS417_05975 -2.8 -2.1 chemotaxis protein CheW compare
PS417_16490 -2.4 -2.4 cell division protein FtsK compare
PS417_23580 -2.3 -2.1 peptidylprolyl isomerase compare
PS417_03875 -2.0 -3.4 membrane protein compare
PS417_22815 -1.9 -7.0 permease compare
PS417_23825 -1.9 -5.9 penicillin-binding protein compare
PS417_15095 -1.9 -3.1 hypothetical protein compare
PS417_03560 -1.9 -2.2 GTP-binding protein compare
PS417_27800 -1.8 -6.3 exodeoxyribonuclease III compare
PS417_19600 -1.8 -1.5 exonuclease compare
PS417_26985 -1.7 -6.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_15100 -1.6 -2.0 BatB protein compare
PS417_06530 -1.6 -2.7 membrane protein compare
PS417_05985 -1.6 -4.2 chemotaxis protein CheY compare
PS417_20985 -1.6 -2.7 porin compare
PS417_25790 -1.6 -4.1 aminoglycoside phosphotransferase compare
PS417_14350 -1.6 -5.7 multidrug DMT transporter permease conserved
PS417_14070 -1.5 -0.9 hypothetical protein compare
PS417_25645 -1.5 -5.1 peptidase M23 compare
PS417_02385 -1.5 -1.4 esterase compare
PS417_24155 -1.5 -2.0 ATP-binding protein compare
PS417_15090 -1.5 -3.2 hypothetical protein compare
PS417_17305 -1.4 -1.6 hypothetical protein compare
PS417_15110 -1.4 -5.5 protein BatD compare
PS417_23820 -1.4 -5.6 hypothetical protein compare
PS417_02405 -1.4 -5.7 hypothetical protein conserved
PS417_06730 -1.4 -1.6 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_25650 -1.3 -2.8 anhydro-N-acetylmuramic acid kinase compare
PS417_06375 -1.3 -1.0 deoxycytidine triphosphate deaminase compare
PS417_04650 -1.3 -1.6 D-alanine--D-alanine ligase compare
PS417_23775 -1.3 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_13305 -1.3 -1.7 hypothetical protein compare
PS417_06945 -1.3 -1.4 membrane protein compare
PS417_02210 -1.3 -6.4 diguanylate cyclase compare
PS417_17215 -1.3 -3.2 peptidylprolyl isomerase compare
PS417_12565 -1.3 -2.4 2-dehydro-3-deoxygluconokinase compare
PS417_23025 -1.3 -4.8 murein transglycosylase compare
PS417_07620 -1.3 -2.1 beta-hexosaminidase compare
PS417_14140 -1.2 -2.1 membrane protein compare
PS417_23770 -1.2 -0.8 exodeoxyribonuclease V subunit alpha compare
PS417_05520 -1.2 -6.5 histidine kinase compare
PS417_23950 -1.2 -2.1 polynucleotide phosphorylase/polyadenylase compare
PS417_27300 -1.2 -0.9 cell division protein ZapA compare
PS417_20130 -1.2 -6.8 dehydrogenase compare
PS417_01210 -1.2 -4.4 hypothetical protein compare
PS417_24705 -1.1 -3.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_15085 -1.1 -3.1 ATPase AAA compare
PS417_22210 -1.1 -1.7 AraC family transcriptional regulator compare
PS417_15975 -1.1 -1.3 glutamate carboxypeptidase compare
PS417_08225 -1.1 -3.3 acetolactate synthase compare
PS417_05535 -1.1 -1.3 Fis family transcriptional regulator compare
PS417_00650 -1.1 -0.9 LysR family transcriptional regulator compare
PS417_14345 -1.1 -3.6 LysR family transcriptional regulator compare
PS417_15105 -1.0 -3.7 membrane protein compare
PS417_03935 -1.0 -2.6 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_24370 -1.0 -0.9 (2Fe-2S)-binding protein compare
PS417_08185 -1.0 -2.6 glycosyl transferase compare
PS417_02770 -1.0 -2.2 membrane protein compare
PS417_01620 -1.0 -2.2 preprotein translocase subunit SecB compare
PS417_15875 -1.0 -1.8 LuxR family transcriptional regulator compare
PS417_12660 -1.0 -0.7 hypothetical protein compare
PS417_05525 -1.0 -4.2 Fis family transcriptional regulator compare
PS417_26850 -1.0 -0.7 twin-arginine translocation pathway signal protein compare
PS417_00385 -1.0 -0.9 Fur family transcriptional regulator compare
PS417_11770 -1.0 -1.6 pyruvate dehydrogenase compare
PS417_08410 -1.0 -2.2 hypothetical protein compare
PS417_03705 -1.0 -2.5 2-alkenal reductase compare
PS417_06395 -1.0 -1.9 amino acid transporter compare
PS417_06245 -0.9 -1.8 zinc metallopeptidase RseP compare
PS417_10010 -0.9 -2.1 Replication protein P compare
PS417_06835 -0.9 -1.4 phospholipase compare
PS417_01145 -0.9 -1.1 taurine transporter ATP-binding subunit compare
PS417_23995 -0.9 -0.9 preprotein translocase subunit SecG compare
PS417_00175 -0.9 -1.2 CigR compare
PS417_05510 -0.9 -4.0 alpha/beta hydrolase compare
PS417_03930 -0.9 -4.7 thymidine phosphorylase compare
PS417_19675 -0.9 -3.3 chemotaxis protein CheY compare
PS417_05505 -0.9 -4.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_06845 -0.9 -1.1 lipoprotein compare
PS417_20785 -0.9 -2.5 transcriptional regulator compare
PS417_17945 -0.9 -1.0 hypothetical protein compare
PS417_24710 -0.9 -4.6 lipoprotein compare
PS417_04475 -0.9 -2.9 hypothetical protein compare
PS417_17000 -0.9 -1.9 MerR family transcriptional regulator compare
PS417_07120 -0.9 -3.3 RNA polymerase sigma-H factor compare
PS417_02695 -0.9 -1.7 protein hupE compare
PS417_07540 -0.9 -2.9 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_20610 -0.9 -1.0 hypothetical protein compare
PS417_04290 -0.9 -2.9 hypothetical protein compare
PS417_20650 -0.8 -4.6 hypothetical protein compare
PS417_05140 -0.8 -1.7 dipicolinate synthase compare
PS417_13800 -0.8 -2.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_19625 -0.8 -2.0 histidine kinase compare
PS417_00370 -0.8 -0.9 hypothetical protein compare
PS417_24835 -0.8 -3.2 hypothetical protein compare
PS417_22840 -0.8 -1.2 tRNA-Met compare
PS417_06825 -0.8 -1.3 hypothetical protein compare
PS417_08730 -0.8 -1.7 cytochrome C compare
PS417_27195 -0.8 -0.9 N-acetylglutamate synthase compare
PS417_19215 -0.8 -2.5 polyphosphate kinase compare
PS417_12915 -0.8 -3.0 DNA-binding protein compare
PS417_03740 -0.8 -2.4 peptidylprolyl isomerase compare
PS417_09235 -0.8 -0.8 molecular chaperone compare
PS417_08190 -0.8 -5.4 membrane protein compare
PS417_28040 -0.8 -2.9 histidine kinase compare
PS417_13870 -0.8 -2.1 hypothetical protein compare
PS417_16750 -0.8 -1.9 ABC transporter ATP-binding protein compare
PS417_07095 -0.8 -3.8 histidine kinase compare
PS417_23135 -0.8 -1.6 GTP-binding protein compare
PS417_13755 -0.8 -1.7 oxidoreductase compare
PS417_01600 -0.8 -2.9 peptidase M23 compare
PS417_20025 -0.8 -1.3 alpha-ribazole phosphatase compare
PS417_26805 -0.8 -0.8 cell division protein FtsE compare
PS417_23315 -0.8 -1.0 transcriptional regulator compare
PS417_18310 -0.8 -1.4 hypothetical protein compare
PS417_05515 -0.8 -5.0 hypothetical protein compare
PS417_20635 -0.8 -0.6 ABC transporter ATP-binding protein compare
PS417_08150 -0.8 -1.9 hypothetical protein compare
PS417_23615 -0.8 -1.5 sulfate transporter compare
PS417_19955 -0.8 -1.4 hypothetical protein compare
PS417_10305 -0.8 -1.4 hypothetical protein compare
PS417_02720 -0.8 -0.8 TetR family transcriptional regulator compare
PS417_06620 -0.8 -1.9 hypothetical protein compare
PS417_13175 -0.8 -1.6 iron transporter compare
PS417_15705 -0.7 -1.2 nitrate reductase compare
PS417_08540 -0.7 -2.0 RNA helicase compare
PS417_14595 -0.7 -2.3 pyrroline-5-carboxylate reductase compare
PS417_00045 -0.7 -1.5 glycerol acyltransferase compare
PS417_09465 -0.7 -2.8 FMN reductase compare
PS417_10985 -0.7 -0.7 NADH:flavin oxidoreductase compare
PS417_13820 -0.7 -3.4 UDP-glucose 6-dehydrogenase compare
PS417_01885 -0.7 -2.8 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_25765 -0.7 -1.4 transcriptional regulator compare
PS417_13785 -0.7 -1.1 hypothetical protein compare
PS417_09325 -0.7 -3.2 peptidase S41 compare
PS417_21270 -0.7 -1.4 translation initiation factor 2 compare
PS417_13645 -0.7 -1.8 ABC transporter compare
PS417_20855 -0.7 -1.2 hypothetical protein compare
PS417_22445 -0.7 -1.3 ATP-dependent DNA helicase RuvB compare
PS417_18355 -0.7 -3.2 DNA-binding protein compare
PS417_08245 -0.7 -0.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_16375 -0.7 -3.1 2-hydroxyacid dehydrogenase compare
PS417_05010 -0.7 -1.2 IclR family transcriptional regulator compare
PS417_27040 -0.7 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_06145 -0.7 -0.8 hypothetical protein compare
PS417_13790 -0.7 -2.0 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_07770 -0.7 -1.4 hypothetical protein compare
PS417_22190 -0.7 -4.0 diguanylate cyclase compare
PS417_22640 -0.7 -2.2 cytochrome C biogenesis protein CcmE compare
PS417_14260 -0.7 -1.6 phosphate ABC transporter permease compare
PS417_04760 -0.7 -1.9 hypothetical protein compare
PS417_20525 -0.7 -1.5 LysR family transcriptional regulator compare
PS417_19145 -0.7 -4.6 membrane protein compare
PS417_12490 -0.7 -1.2 autotransporter adhesin compare
PS417_13795 -0.7 -3.1 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_21400 -0.7 -2.6 TetR family transcriptional regulator compare
PS417_05865 -0.7 -1.5 hypothetical protein compare
PS417_15440 -0.7 -2.6 iron ABC transporter substrate-binding protein compare
PS417_08180 -0.7 -4.2 glycosyl transferase compare
PS417_26155 -0.7 -1.8 hypothetical protein compare
PS417_21760 -0.7 -0.9 hypothetical protein compare
PS417_06540 -0.7 -1.1 membrane protein compare
PS417_04410 -0.7 -1.0 hypothetical protein compare
PS417_06770 -0.7 -3.2 multidrug transporter compare
PS417_22960 -0.7 -1.7 hypothetical protein compare
PS417_10655 -0.7 -2.0 LuxR family transcriptional regulator compare
PS417_15370 -0.7 -1.7 kinase compare
PS417_28250 -0.7 -4.9 cell wall assembly protein compare
PS417_03485 -0.7 -2.0 type III secretion protein compare
PS417_21235 -0.7 -2.5 transglutaminase compare
PS417_27475 -0.7 -1.1 membrane protein compare
PS417_17125 -0.6 -2.1 transcriptional regulator compare
PS417_12035 -0.6 -1.6 dihydroxyacetone kinase compare
PS417_19425 -0.6 -0.7 allantoicase compare
PS417_22810 -0.6 -0.9 DNA base-flipping protein YbaZ compare
PS417_19635 -0.6 -4.3 lipid kinase compare
PS417_07845 -0.6 -1.5 transcriptional regulator compare
PS417_20645 -0.6 -4.1 membrane protein compare
PS417_02495 -0.6 -2.5 GTPase HflX compare
PS417_08165 -0.6 -3.9 UDP-glucose 4-epimerase compare
PS417_02725 -0.6 -1.1 hypothetical protein compare
PS417_22085 -0.6 -1.1 aldehyde dehydrogenase compare
PS417_09010 -0.6 -1.1 phosphohistidine phosphatase compare
PS417_02370 -0.6 -1.1 ADP-ribose pyrophosphatase compare
PS417_24240 -0.6 -2.8 membrane protein compare
PS417_00455 -0.6 -1.3 hypothetical protein compare
PS417_14295 -0.6 -1.4 AraC family transcriptional regulator compare
PS417_01185 -0.6 -3.4 ribosomal protein S6 modification protein compare
PS417_21680 -0.6 -2.7 succinylglutamate desuccinylase compare
PS417_09445 -0.6 -1.8 antibiotic biosynthesis monooxygenase compare
PS417_20585 -0.6 -1.9 chemotaxis protein compare
PS417_22570 -0.6 -0.5 H-NS histone compare
PS417_18775 -0.6 -1.8 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_28265 -0.6 -1.6 pyridoxamine kinase compare
PS417_03905 -0.6 -1.6 fimbrial protein compare
PS417_13185 -0.6 -1.1 RND transporter compare
PS417_18545 -0.6 -2.0 cell division protein compare
PS417_09470 -0.6 -0.9 hypothetical protein compare
PS417_19285 -0.6 -1.1 ankyrin compare


Specific Phenotypes

For 9 genes in this experiment

For stress Phosphomycin disodium salt in Pseudomonas simiae WCS417

For stress Phosphomycin disodium salt across organisms