Experiment set4IT077 for Pseudomonas simiae WCS417

Compare to:

LB with Phosphomycin disodium salt 0.002 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
PS417_27345 +9.1 69.1 sn-glycerol-3-phosphate transporter conserved
PS417_28085 +8.3 60.4 phosphate-binding protein compare
PS417_28075 +8.0 33.5 phosphate ABC transporter permease compare
PS417_28080 +7.8 50.1 phosphate ABC transporter permease compare
PS417_28070 +7.4 48.1 phosphate ABC transporter ATP-binding protein compare
PS417_22620 +6.7 33.9 pyruvate kinase compare
PS417_04365 +4.6 14.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_22520 +4.5 11.7 histidine kinase compare
PS417_06680 +4.4 30.3 nuclease PIN compare
PS417_02270 +4.2 14.1 carbamoyltransferase compare
PS417_26420 +3.9 1.8 hypothetical protein compare
PS417_21430 +3.7 8.7 3-oxoacyl-ACP synthase compare
PS417_16825 +3.5 2.0 membrane protein compare
PS417_08510 +3.4 3.3 LysR family transcriptional regulator compare
PS417_04170 +3.1 19.9 stringent starvation protein A compare
PS417_02555 +3.0 21.8 exoribonuclease R compare
PS417_27245 +2.9 15.5 aminotransferase DegT compare
PS417_12855 +2.5 9.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02690 +2.5 12.3 N-acylglucosamine 2-epimerase conserved
PS417_05575 +2.3 11.5 Glycerol kinase (EC 2.7.1.30) (from data) conserved
PS417_02485 +2.3 10.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_28230 +2.2 5.8 transcriptional regulator compare
PS417_22690 +2.1 6.9 phosphogluconate dehydratase compare
PS417_06200 +2.0 6.2 protein-PII uridylyltransferase compare
PS417_21000 +1.9 3.1 CrfX protein compare
PS417_22565 +1.9 4.3 formyltetrahydrofolate deformylase compare
PS417_22115 +1.8 3.8 transcriptional regulator compare
PS417_18360 +1.8 1.6 hypothetical protein compare
PS417_02475 +1.7 7.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_02480 +1.7 4.4 DNA mismatch repair protein compare
PS417_23900 +1.6 10.0 poly(A) polymerase compare
PS417_05580 +1.5 5.7 glycerol uptake facilitator GlpF compare
PS417_04685 +1.5 2.1 histidine kinase compare
PS417_02255 +1.5 6.2 lipopolysaccharide kinase compare
PS417_08170 +1.5 8.9 capsular biosynthesis protein compare
PS417_27340 +1.5 4.4 NADPH:quinone oxidoreductase conserved
PS417_27810 +1.4 7.0 ribonuclease PH compare
PS417_01605 +1.4 3.3 phosphoglycerate mutase compare
PS417_12220 +1.4 4.7 hydroxyacylglutathione hydrolase compare
PS417_22615 +1.3 3.8 hypothetical protein compare
PS417_01950 +1.3 6.7 malate dehydrogenase compare
PS417_21630 +1.2 4.6 magnesium transporter compare
PS417_28010 +1.2 1.8 pyridine nucleotide-disulfide oxidoreductase compare
PS417_21565 +1.2 4.2 flagellar basal body rod protein FlgC compare
PS417_19885 +1.2 3.5 flagellar basal body rod protein FlgG compare
PS417_23380 +1.1 2.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_27335 +1.1 6.9 flagellar basal body protein FliL conserved
PS417_27535 +1.1 8.5 chemotaxis protein CheY compare
PS417_23375 +1.1 3.1 cytochrome C oxidase compare
PS417_27350 +1.1 5.7 calcium transporter ChaC conserved
PS417_02280 +1.1 2.6 GlcNAc-PI de-N-acetylase compare
PS417_04270 +1.1 7.1 ribonuclease G compare
PS417_22450 +1.1 2.1 ATP-dependent DNA helicase RuvA compare
PS417_21555 +1.1 6.7 flagellar hook protein FlgE compare
PS417_13735 +1.1 2.3 hypothetical protein compare
PS417_11400 +1.1 1.9 phosphoglycerate mutase compare
PS417_05635 +1.0 5.4 membrane protein compare
PS417_19865 +1.0 7.4 flagellar hook protein FlgK compare
PS417_19860 +1.0 8.0 flagellar hook protein FlgL compare
PS417_23385 +1.0 6.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_16715 +1.0 1.8 DoxX family protein compare
PS417_09085 +1.0 1.3 hypothetical protein compare
PS417_27935 +1.0 2.0 type VI secretion protein compare
PS417_06045 +1.0 2.3 membrane protein compare
PS417_13555 +1.0 2.1 ABC transporter permease compare
PS417_23370 +1.0 3.9 protoheme IX farnesyltransferase compare
PS417_21570 +1.0 5.6 flagellar basal body rod protein FlgB compare
PS417_21595 +1.0 4.2 flagellar biosynthesis protein FlgN compare
PS417_19695 +1.0 4.2 flagellar biosynthesis sigma factor compare
PS417_01410 +1.0 6.5 transporter compare
PS417_23390 +1.0 3.1 ubiquinol oxidase subunit II compare
PS417_01955 +1.0 6.2 peptidase compare
PS417_21070 +1.0 2.3 aconitate hydratase compare
PS417_01855 +1.0 2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_19785 +1.0 3.7 flagellar biogenesis protein compare
PS417_09045 +1.0 3.8 histidine kinase compare
PS417_26660 +0.9 3.4 protein PilI compare
PS417_10260 +0.9 1.9 peptidase compare
PS417_21585 +0.9 5.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_10095 +0.9 1.8 hypothetical protein compare
PS417_12160 +0.9 2.0 Fis family transcriptional regulator compare
PS417_19880 +0.9 5.1 flagellar basal body L-ring protein compare
PS417_09695 +0.9 0.7 hydrolase compare
PS417_19735 +0.9 3.4 flagellar biosynthesis protein FliQ compare
PS417_03080 +0.9 3.1 hypothetical protein compare
PS417_25175 +0.9 2.9 hypothetical protein compare
PS417_19745 +0.9 3.6 flagellar assembly protein FliO compare
PS417_27290 +0.9 2.3 hypothetical protein compare
PS417_04800 +0.9 1.7 alginate O-acetyltransferase compare
PS417_19650 +0.9 1.5 chemotaxis protein CheW compare
PS417_09735 +0.9 5.2 hypothetical protein compare
PS417_19825 +0.9 5.7 ATPase AAA compare
PS417_11805 +0.9 2.0 D-threo-aldose 1-dehydrogenase compare
PS417_22935 +0.9 2.3 hypothetical protein compare
PS417_22375 +0.8 1.2 cold-shock protein compare
PS417_27425 +0.8 5.7 exopolyphosphatase compare
PS417_19730 +0.8 2.7 flagellar biosynthesis protein FliR compare
PS417_11535 +0.8 2.2 nicotinate phosphoribosyltransferase compare
PS417_14605 +0.8 1.3 adenylate kinase compare
PS417_14410 +0.8 3.4 ABC transporter substrate-binding protein compare
PS417_19710 +0.8 5.3 flagellar biosynthesis protein FlhA compare
PS417_10185 +0.8 2.7 hypothetical protein compare
PS417_06500 +0.8 1.1 hypothetical protein compare
PS417_24895 +0.8 1.8 hypothetical protein compare
PS417_04775 +0.8 2.8 short-chain dehydrogenase compare
PS417_08130 +0.8 1.3 aspartate aminotransferase compare
PS417_19840 +0.8 5.6 flagellar cap protein FliD compare
PS417_23360 +0.8 1.3 hypothetical protein compare
PS417_19725 +0.8 3.9 flagellar biosynthesis protein FlhB compare
PS417_26685 +0.8 2.1 hypothetical protein compare
PS417_02435 +0.8 3.7 flagellar motor protein MotA compare
PS417_21125 +0.8 4.3 phosphoadenosine phosphosulfate reductase compare
PS417_28145 +0.8 2.5 AraC family transcriptional regulator compare
PS417_03895 +0.8 2.7 methyltransferase compare
PS417_00900 +0.8 1.8 4-aminobutyrate aminotransferase compare
PS417_25710 +0.8 1.8 indole-3-glycerol-phosphate synthase compare
PS417_19795 +0.8 4.5 flagellar assembly protein FliH compare
PS417_14810 +0.8 1.4 Fosmidomycin resistance protein compare
PS417_27815 +0.8 1.5 hypothetical protein compare
PS417_04845 +0.8 3.8 GDP-mannose dehydrogenase compare
PS417_16845 +0.8 2.7 monovalent cation/H+ antiporter subunit E compare
PS417_20105 +0.8 6.7 glycosyl transferase compare
PS417_08135 +0.8 1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27875 +0.8 4.4 histidine kinase compare
PS417_01945 +0.8 2.9 nuclease compare
PS417_26240 +0.8 1.5 N-methylproline demethylase compare
PS417_19335 +0.7 1.7 isochorismatase compare
PS417_09420 +0.7 1.9 LysR family transcriptional regulator compare
PS417_08620 +0.7 1.0 hypothetical protein compare
PS417_19065 +0.7 1.1 monooxygenase compare
PS417_01415 +0.7 4.7 glycosyl transferase family 1 compare
PS417_19835 +0.7 1.4 flagellar biosynthesis protein FliS compare
PS417_10680 +0.7 3.3 enoyl-CoA hydratase compare
PS417_14245 +0.7 1.5 hypothetical protein compare
PS417_06175 +0.7 0.7 cysteine sulfinate desulfinase compare
PS417_27910 +0.7 2.6 PppA compare
PS417_00960 +0.7 2.0 transcriptional regulator compare
PS417_08025 +0.7 1.0 acetylornithine aminotransferase compare
PS417_19870 +0.7 2.5 flagellar rod assembly protein FlgJ compare
PS417_07205 +0.7 3.2 LysR family transcriptional regulator compare
PS417_04960 +0.7 1.1 hypothetical protein compare
PS417_23725 +0.7 2.2 methylmalonate-semialdehyde dehydrogenase compare
PS417_23105 +0.7 1.8 hypothetical protein compare
PS417_10390 +0.7 1.5 RNA polymerase subunit sigma24 compare
PS417_05200 +0.7 2.6 DNA recombination protein RecO compare
PS417_19790 +0.7 1.7 ATP synthase compare
PS417_09600 +0.7 0.9 glycosyl transferase family 1 compare
PS417_04530 +0.7 1.8 glycerate dehydrogenase compare
PS417_01395 +0.7 5.6 biofilm formation protein PelB compare
PS417_04375 +0.7 1.7 ABC transporter ATP-binding protein compare
PS417_01965 +0.7 1.3 fimbriae biosynthesis protein compare
PS417_13075 +0.7 1.4 hypothetical protein compare
PS417_26655 +0.7 2.0 chemotaxis protein compare
PS417_17160 +0.7 1.7 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_15215 +0.7 1.8 protein activator of alkane oxidation PraA compare
PS417_06970 +0.7 1.9 LysR family transcriptional regulator compare
PS417_03340 +0.7 2.0 gluconate transporter compare
PS417_19850 +0.7 3.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_15955 +0.7 1.6 secretion protein HylD compare
PS417_17590 +0.7 1.2 ABC transporter substrate-binding protein compare
PS417_21025 +0.7 3.5 PEP synthetase regulatory protein compare
PS417_03970 +0.7 1.4 1-phosphofructokinase compare
PS417_16320 +0.7 1.4 protein tyrosine phosphatase compare
PS417_21010 +0.7 1.0 ribonuclease activity regulator protein RraA compare
PS417_02055 +0.7 2.7 methyltransferase compare
PS417_16285 +0.7 1.6 diguanylate cyclase compare
PS417_19765 +0.7 3.8 flagellar hook-length control protein compare
PS417_21560 +0.7 2.6 flagellar basal body rod modification protein FlgD compare
PS417_27640 +0.7 1.6 TetR family transcriptional regulator compare
PS417_19350 +0.7 3.1 GTP cyclohydrolase compare
PS417_26650 +0.6 4.6 histidine kinase compare
PS417_15770 +0.6 0.9 pyridoxine 5'-phosphate oxidase compare
PS417_16000 +0.6 1.1 chemotaxis protein CheY compare
PS417_06355 +0.6 2.0 protein-L-isoaspartate O-methyltransferase compare
PS417_20090 +0.6 4.3 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_15400 +0.6 1.4 hypothetical protein compare
PS417_01095 +0.6 1.2 amino acid ABC transporter ATP-binding protein compare
PS417_05680 +0.6 2.6 DNA mismatch repair protein MutS compare
PS417_11075 +0.6 1.9 hydroxypyruvate isomerase compare
PS417_07640 +0.6 1.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04815 +0.6 1.1 alginate O-acetyltransferase compare
PS417_17900 +0.6 2.1 transcriptional regulator compare
PS417_00160 +0.6 3.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_18635 +0.6 1.4 4-hydroxybenzoyl-CoA thioesterase compare
PS417_01390 +0.6 3.9 PbsX family transcriptional regulator compare
PS417_11950 +0.6 1.0 hypothetical protein compare
PS417_20095 +0.6 5.1 hypothetical protein compare
PS417_27785 +0.6 4.3 phosphoglucomutase compare
PS417_14950 +0.6 2.4 structural protein MipA compare
PS417_18435 +0.6 1.2 hypothetical protein compare
PS417_13490 +0.6 1.3 hypothetical protein compare
PS417_26335 +0.6 1.4 BetI family transcriptional regulator compare
PS417_17670 +0.6 1.8 ABC transporter permease compare
PS417_05735 +0.6 2.3 tail fiber protein compare
PS417_11925 +0.6 1.4 hypothetical protein compare
PS417_00915 +0.6 1.4 aminotransferase compare
PS417_01560 +0.6 1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_06330 +0.6 1.9 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_01400 +0.6 1.7 hypothetical protein compare
PS417_21850 +0.6 1.2 LysR family transcriptional regulator compare


Specific Phenotypes

For 9 genes in this experiment

For stress Phosphomycin disodium salt in Pseudomonas simiae WCS417

For stress Phosphomycin disodium salt across organisms