Experiment set4IT077 for Pseudomonas simiae WCS417
LB with Phosphomycin disodium salt 0.002 mg/ml
Group: stressMedia: LB + Phosphomycin disodium salt (0.002 mg/ml)
Culturing: fluoroDangl_ML3, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 3/1/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1163 B7,B8
Specific Phenotypes
For 9 genes in this experiment
For stress Phosphomycin disodium salt in Pseudomonas simiae WCS417
For stress Phosphomycin disodium salt across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glycerol degradation I | 3 | 3 | 2 |
| glycerol and glycerophosphodiester degradation | 4 | 4 | 2 |
| arsenate detoxification III | 2 | 2 | 1 |
| D-mannose degradation II | 2 | 1 | 1 |
| D-mannose degradation I | 2 | 1 | 1 |
| β-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation | 3 | 2 | 1 |
| mannitol biosynthesis | 3 | 1 | 1 |
| GDP-mannose biosynthesis | 4 | 4 | 1 |
| mannitol degradation II | 4 | 2 | 1 |
| tRNA processing | 10 | 8 | 2 |
| 1,5-anhydrofructose degradation | 5 | 2 | 1 |
| arsenic detoxification (plants) | 6 | 3 | 1 |
| β-(1,4)-mannan degradation | 7 | 2 | 1 |
| colanic acid building blocks biosynthesis | 11 | 8 | 1 |
| arsenic detoxification (yeast) | 12 | 4 | 1 |
| superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis | 14 | 6 | 1 |
| arsenic detoxification (mammals) | 17 | 8 | 1 |