Experiment set4IT076 for Pseudomonas simiae WCS417

Compare to:

LB with Phosphomycin disodium salt 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_05975 -3.2 -1.9 chemotaxis protein CheW compare
PS417_06375 -2.9 -1.2 deoxycytidine triphosphate deaminase compare
PS417_06245 -2.7 -2.6 zinc metallopeptidase RseP compare
PS417_08245 -2.1 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_25650 -2.1 -4.7 anhydro-N-acetylmuramic acid kinase compare
PS417_07620 -2.0 -2.4 beta-hexosaminidase compare
PS417_07470 -2.0 -1.4 hypothetical protein compare
PS417_26605 -2.0 -1.7 malonate decarboxylase subunit beta compare
PS417_15095 -1.9 -4.3 hypothetical protein compare
PS417_15090 -1.9 -2.0 hypothetical protein compare
PS417_15110 -1.8 -7.1 protein BatD compare
PS417_22815 -1.8 -6.1 permease compare
PS417_06730 -1.8 -1.9 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_23025 -1.7 -5.2 murein transglycosylase compare
PS417_06600 -1.7 -1.2 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_27800 -1.6 -4.9 exodeoxyribonuclease III compare
PS417_05140 -1.6 -2.3 dipicolinate synthase compare
PS417_20635 -1.6 -0.9 ABC transporter ATP-binding protein compare
PS417_21510 -1.5 -1.5 histidine kinase compare
PS417_01965 -1.5 -2.0 fimbriae biosynthesis protein compare
PS417_25645 -1.5 -4.5 peptidase M23 compare
PS417_17945 -1.5 -1.2 hypothetical protein compare
PS417_24705 -1.4 -3.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_19675 -1.4 -5.2 chemotaxis protein CheY compare
PS417_02805 -1.4 -1.1 urease subunit gamma compare
PS417_04410 -1.3 -1.6 hypothetical protein compare
PS417_25790 -1.3 -2.7 aminoglycoside phosphotransferase compare
PS417_20985 -1.3 -2.2 porin compare
PS417_15105 -1.3 -4.5 membrane protein compare
PS417_24615 -1.3 -1.1 hypothetical protein compare
PS417_22840 -1.3 -2.1 tRNA-Met compare
PS417_10405 -1.3 -1.1 filamentous hemagglutinin compare
PS417_14070 -1.3 -0.7 hypothetical protein compare
PS417_26985 -1.2 -5.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_17035 -1.2 -1.2 Cro/Cl family transcriptional regulator compare
PS417_25155 -1.2 -1.7 hypothetical protein compare
PS417_18780 -1.2 -1.3 flavin reductase compare
PS417_23825 -1.2 -4.6 penicillin-binding protein compare
PS417_05525 -1.2 -4.5 Fis family transcriptional regulator compare
PS417_01915 -1.2 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04340 -1.2 -5.3 ribosome hibernation promoting factor HPF compare
PS417_20130 -1.2 -5.9 dehydrogenase compare
PS417_22980 -1.2 -3.1 GntR family transcriptional regulator compare
PS417_16490 -1.1 -1.9 cell division protein FtsK compare
PS417_00385 -1.1 -0.9 Fur family transcriptional regulator compare
PS417_05520 -1.1 -6.2 histidine kinase compare
PS417_14350 -1.1 -4.0 multidrug DMT transporter permease conserved
PS417_08205 -1.1 -1.9 acetyltransferase compare
PS417_08230 -1.1 -1.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_07120 -1.0 -4.0 RNA polymerase sigma-H factor compare
PS417_20140 -1.0 -2.0 nucleoprotein/polynucleotide-associated enzyme compare
PS417_20880 -1.0 -2.3 GntR family transcriptional regulator compare
PS417_02405 -1.0 -5.3 hypothetical protein conserved
PS417_05815 -1.0 -3.0 recombinase RecA compare
PS417_02895 -1.0 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_18915 -1.0 -2.2 hypothetical protein compare
PS417_10425 -1.0 -1.5 hypothetical protein compare
PS417_16665 -1.0 -1.6 hypothetical protein compare
PS417_15100 -1.0 -1.3 BatB protein compare
PS417_19975 -0.9 -1.7 hypothetical protein compare
PS417_15540 -0.9 -1.2 NUDIX hydrolase compare
PS417_15085 -0.9 -2.5 ATPase AAA compare
PS417_14915 -0.9 -2.6 host specificity protein compare
PS417_24710 -0.9 -5.4 lipoprotein compare
PS417_05985 -0.9 -1.9 chemotaxis protein CheY compare
PS417_03465 -0.9 -1.2 type III secretion protein compare
PS417_09625 -0.9 -2.6 sugar ABC transporter substrate-binding protein compare
PS417_01875 -0.9 -1.6 polyhydroxyalkanoic acid system protein compare
PS417_23820 -0.9 -3.4 hypothetical protein compare
PS417_23150 -0.9 -2.0 Cro/Cl family transcriptional regulator compare
PS417_02365 -0.9 -2.3 hypothetical protein compare
PS417_05010 -0.9 -1.8 IclR family transcriptional regulator compare
PS417_27870 -0.9 -1.8 ATP-dependent DNA helicase RecG compare
PS417_08410 -0.9 -1.9 hypothetical protein compare
PS417_20650 -0.9 -4.8 hypothetical protein compare
PS417_02210 -0.8 -3.0 diguanylate cyclase compare
PS417_01210 -0.8 -4.3 hypothetical protein compare
PS417_00650 -0.8 -0.7 LysR family transcriptional regulator compare
PS417_01280 -0.8 -1.8 peptidoglycan-binding protein LysM compare
PS417_12730 -0.8 -0.9 glycosyltransferase compare
PS417_17110 -0.8 -3.1 spore coat protein compare
PS417_28015 -0.8 -3.5 rubredoxin compare
PS417_15705 -0.8 -1.4 nitrate reductase compare
PS417_14345 -0.8 -3.6 LysR family transcriptional regulator compare
PS417_09995 -0.8 -1.9 regulatory protein compare
PS417_12110 -0.8 -1.2 ATP-binding protein compare
PS417_03930 -0.8 -4.6 thymidine phosphorylase compare
PS417_10040 -0.8 -0.9 MFS transporter compare
PS417_08180 -0.8 -4.5 glycosyl transferase compare
PS417_11180 -0.8 -1.7 TetR family transcriptional regulator compare
PS417_16520 -0.8 -1.6 cold-shock protein compare
PS417_06945 -0.8 -1.0 membrane protein compare
PS417_09915 -0.8 -0.9 hypothetical protein compare
PS417_14710 -0.8 -1.1 isochorismatase compare
PS417_06530 -0.8 -1.8 membrane protein compare
PS417_22445 -0.8 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_20080 -0.8 -1.5 peptidase P60 compare
PS417_14260 -0.8 -1.9 phosphate ABC transporter permease compare
PS417_03935 -0.8 -1.9 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_13800 -0.8 -2.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_20785 -0.8 -2.9 transcriptional regulator compare
PS417_14295 -0.8 -1.4 AraC family transcriptional regulator compare
PS417_02395 -0.7 -2.4 DNA topoisomerase IV subunit B compare
PS417_28325 -0.7 -1.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_23170 -0.7 -1.3 FeS assembly protein IscX compare
PS417_17215 -0.7 -1.9 peptidylprolyl isomerase compare
PS417_01600 -0.7 -3.5 peptidase M23 compare
PS417_11125 -0.7 -2.3 hypothetical protein compare
PS417_01510 -0.7 -1.1 hypothetical protein compare
PS417_04305 -0.7 -0.8 aspartate ammonia-lyase compare
PS417_17125 -0.7 -2.1 transcriptional regulator compare
PS417_26260 -0.7 -0.8 hypothetical protein compare
PS417_19935 -0.7 -1.8 hypothetical protein compare
PS417_10575 -0.7 -1.6 DNA alkylation repair protein compare
PS417_27865 -0.7 -2.1 LysR family transcriptional regulator compare
PS417_24835 -0.7 -2.3 hypothetical protein compare
PS417_10825 -0.7 -3.9 glycine/betaine ABC transporter substrate-binding protein compare
PS417_05235 -0.7 -1.4 peptidase inhibitor I42 compare
PS417_10335 -0.7 -1.3 peroxiredoxin compare
PS417_11070 -0.7 -1.7 rhizopine-binding protein compare
PS417_11510 -0.7 -1.0 AraC family transcriptional regulator compare
PS417_04300 -0.7 -1.5 FagA protein compare
PS417_02165 -0.7 -1.8 ZapA compare
PS417_18730 -0.7 -1.6 ABC transporter permease compare
PS417_10010 -0.7 -1.2 Replication protein P compare
PS417_08195 -0.7 -3.4 hypothetical protein compare
PS417_00550 -0.7 -0.7 hypothetical protein compare
PS417_07820 -0.7 -1.0 transposase compare
PS417_05100 -0.7 -0.9 RNA polymerase sigma factor compare
PS417_28250 -0.7 -4.2 cell wall assembly protein compare
PS417_22310 -0.7 -2.5 CAIB/BAIF family CoA transferase compare
PS417_13240 -0.6 -1.8 siderophore biosynthesis protein compare
PS417_04290 -0.6 -2.2 hypothetical protein compare
PS417_23330 -0.6 -1.7 hypothetical protein compare
PS417_06710 -0.6 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_17000 -0.6 -1.8 MerR family transcriptional regulator compare
PS417_00920 -0.6 -2.4 diguanylate cyclase compare
PS417_10330 -0.6 -1.7 histidine kinase compare
PS417_09865 -0.6 -0.9 hypothetical protein compare
PS417_03145 -0.6 -1.3 acetyl-CoA acetyltransferase compare
PS417_04595 -0.6 -1.5 cell division protein MraZ compare
PS417_07455 -0.6 -0.9 glutamine amidotransferase compare
PS417_08155 -0.6 -1.1 integration host factor subunit beta compare
PS417_07950 -0.6 -1.9 MFS transporter compare
PS417_07870 -0.6 -1.2 hypothetical protein compare
PS417_11950 -0.6 -0.7 hypothetical protein compare
PS417_07165 -0.6 -1.5 dihydrodipicolinate synthase compare
PS417_02695 -0.6 -1.2 protein hupE compare
PS417_00515 -0.6 -4.1 membrane protein compare
PS417_11100 -0.6 -1.7 MocE compare
PS417_26195 -0.6 -2.0 serine hydroxymethyltransferase compare
PS417_00635 -0.6 -2.7 sulfonate ABC transporter ATP-binding protein compare
PS417_15895 -0.6 -1.6 iron dicitrate transport regulator FecR compare
PS417_18235 -0.6 -1.3 nitrile hydratase compare
PS417_08225 -0.6 -2.2 acetolactate synthase compare
PS417_17385 -0.6 -1.8 aldose epimerase compare
PS417_27205 -0.6 -2.1 adenylate cyclase compare
PS417_01290 -0.6 -0.8 ADP-ribose diphosphatase compare
PS417_08420 -0.6 -2.3 lipoprotein compare
PS417_08185 -0.6 -1.6 glycosyl transferase compare
PS417_28355 -0.6 -2.3 cardiolipin synthetase compare
PS417_07795 -0.6 -1.6 hypothetical protein compare
PS417_14065 -0.6 -3.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_10675 -0.6 -0.6 TetR family transcriptional regulator compare
PS417_17445 -0.6 -2.0 sulfur oxidation protein SoxZ compare
PS417_27435 -0.6 -2.8 polyphosphate kinase compare
PS417_20645 -0.6 -3.3 membrane protein compare
PS417_18570 -0.6 -1.5 peptidoglycan-binding protein compare
PS417_10025 -0.6 -0.9 bacteriophage lambda NinG family protein compare
PS417_21255 -0.6 -1.3 hypothetical protein compare
PS417_11765 -0.6 -2.7 ABC transporter substrate-binding protein compare
PS417_15035 -0.6 -0.9 alkylhydroperoxidase compare
PS417_17650 -0.6 -1.5 proteinase compare
PS417_27795 -0.6 -0.6 orotate phosphoribosyltransferase compare
PS417_13790 -0.6 -1.4 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_12545 -0.6 -2.6 xanthine permease XanP compare
PS417_21915 -0.6 -1.4 LysR family transcriptional regulator compare
PS417_13175 -0.6 -1.0 iron transporter compare
PS417_00075 -0.6 -1.6 hypothetical protein compare
PS417_06465 -0.6 -1.5 transcriptional regulator compare
PS417_24460 -0.6 -1.2 hypothetical protein compare
PS417_05510 -0.6 -2.4 alpha/beta hydrolase compare
PS417_08190 -0.6 -3.8 membrane protein compare
PS417_22945 -0.6 -0.9 phosphoribosylglycinamide formyltransferase compare
PS417_16645 -0.6 -2.1 XRE family transcriptional regulator compare
PS417_23485 -0.6 -1.9 antibiotic biosynthesis monooxygenase compare
PS417_26145 -0.6 -1.2 hypothetical protein compare
PS417_04585 -0.6 -1.0 hypothetical protein compare
PS417_08160 -0.6 -2.0 hypothetical protein compare
PS417_01900 -0.6 -1.9 poly(3-hydroxyalkanoate) depolymerase compare
PS417_18160 -0.5 -1.2 YeeE/YedE compare
PS417_15510 -0.5 -0.9 hypothetical protein compare
PS417_04560 -0.5 -2.9 beta-lactamase compare
PS417_22190 -0.5 -3.0 diguanylate cyclase compare
PS417_23770 -0.5 -0.4 exodeoxyribonuclease V subunit alpha compare
PS417_07095 -0.5 -2.8 histidine kinase compare
PS417_10840 -0.5 -2.1 amidase compare
PS417_17490 -0.5 -1.3 ABC transporter ATP-binding protein compare
PS417_11705 -0.5 -2.5 cyclic peptide transporter compare
PS417_24030 -0.5 -0.9 MFS transporter compare


Specific Phenotypes

For 3 genes in this experiment

For stress Phosphomycin disodium salt in Pseudomonas simiae WCS417

For stress Phosphomycin disodium salt across organisms