Experiment set4IT076 for Agrobacterium fabrum C58

Compare to:

R2A with Trimethoprim 2.5 mM

200 most important genes:

  gene name fitness t score description  
Atu3730 -2.9 -2.8 hypothetical protein compare
Atu1688 -2.6 -4.4 indole-3-glycerol-phosphate synthase compare
Atu0017 -2.4 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2289 -2.2 -9.2 anthranilate synthase component I and II compare
Atu0225 -1.9 -1.5 hypothetical protein compare
Atu1687 -1.8 -4.7 anthranilate phosphoribosyltransferase compare
Atu0040 -1.8 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0346 -1.8 -5.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1354 -1.7 -1.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1308 -1.6 -5.3 aspartate carbamoyl transferase catalytic subunit compare
Atu0184 -1.6 -1.9 glucokinase compare
Atu0434 -1.5 -2.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2710 -1.5 -5.6 hypothetical protein compare
Atu2464 -1.4 -3.1 formyltetrahydrofolate deformylase compare
Atu3763 -1.4 -1.6 hypothetical protein compare
Atu2728 -1.4 -5.1 beta (1-->2) glucan export ATP-binding protein compare
Atu3598 -1.4 -2.2 thiol:disulfide interchange protein compare
Atu0103 -1.3 -8.0 penicillin-binding protein compare
Atu0972 -1.3 -6.2 lipA protein compare
Atu1446 -1.3 -2.6 two component response regulator compare
Atu2113 -1.3 -2.7 N-acetylmuramoyl-L-alanine amidase compare
Atu1307 -1.3 -5.3 dihydroorotase compare
Atu0399 -1.3 -3.8 dihydroorotase compare
Atu0486 -1.3 -4.6 dihydroorotate dehydrogenase compare
Atu0189 -1.3 -3.2 ABC transporter, membrane spanning protein (peptide) compare
Atu5142 -1.2 -1.8 hypothetical protein compare
Atu1359 -1.2 -1.1 dnaK deletion suppressor protein compare
Atu1570 -1.2 -1.3 hypothetical protein compare
Atu0598 -1.1 -5.0 phosphogluconate dehydratase compare
Atu0400 -1.1 -2.8 orotate phosphoribosyltransferase compare
Atu0188 -1.1 -3.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0298 -1.1 -3.6 orotidine 5 compare
Atu1110 -1.1 -2.6 cytosol aminopeptidase compare
Atu1163 -1.1 -2.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0190 -1.1 -5.5 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3001 -1.1 -1.5 hypothetical protein compare
Atu1774 -1.1 -6.4 ABC transporter, substrate binding protein (peptide) compare
Atu2793 -1.1 -4.8 cobyrinic acid a,c-diamide synthase compare
Atu1686 -1.0 -6.0 peptidyl-prolyl cis-trans isomerse D compare
Atu3469 -1.0 -1.7 phosphoglyceromutase compare
Atu1566 -1.0 -1.2 hypothetical protein compare
Atu0533 -1.0 -2.9 putative inhibitor of septum formation compare
Atu5115 -1.0 -1.0 hypothetical protein compare
Atu3634 -1.0 -3.3 penicillin-binding protein dacf precursor compare
Atu2807 -1.0 -4.0 cob(I)alamin adenosyltransferase compare
Atu4072 -0.9 -2.1 nodulation protein N compare
Atu0883 -0.9 -1.9 hypothetical protein compare
Atu2809 -0.9 -4.6 cobalamin biosynthesis protein compare
Atu1874 -0.9 -1.7 RecA protein compare
Atu2578 -0.9 -4.1 cAMP-dependent protein kinase regulatory subunit compare
Atu2683 -0.9 -1.4 hypothetical protein compare
Atu5451 -0.9 -0.8 hypothetical protein compare
Atu3754 -0.8 -4.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1644 -0.8 -2.6 hypothetical protein compare
Atu8162 -0.8 -1.2 hypothetical protein compare
Atu0031 -0.8 -1.3 PTS system, IIA component compare
Atu3755 -0.8 -2.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0470 -0.8 -1.9 hypothetical protein compare
Atu1904 -0.8 -1.9 transcriptional regulator compare
Atu1030 -0.8 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1495 -0.8 -2.4 hypothetical protein compare
Atu2036 -0.8 -5.2 acetolactate synthase III, large subunit compare
Atu4161 -0.8 -1.7 hypothetical protein compare
Atu1542 -0.8 -3.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2207 -0.8 -3.7 two component sensor kinase compare
Atu5088 -0.8 -1.9 hypothetical protein compare
Atu0025 -0.8 -1.2 hypothetical protein compare
Atu4711 -0.8 -3.5 two component sensor kinase compare
Atu0422 -0.8 -0.9 ABC transporter, membrane spanning protein compare
Atu8096 -0.8 -1.2 hypothetical protein compare
Atu0039 -0.8 -1.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu2808 -0.7 -3.5 cobyric acid synthase compare
Atu1077 -0.7 -1.7 DNA repair protein compare
Atu4346 -0.7 -2.7 hypothetical protein compare
Atu1028 -0.7 -1.3 hypothetical protein compare
Atu2804 -0.7 -4.4 cobaltochelatase subunit compare
Atu4840 -0.7 -2.7 hypothetical protein compare
Atu4075 -0.7 -3.6 glycogen synthase compare
Atu8025 -0.7 -0.9 hypothetical protein compare
Atu0528 -0.7 -2.4 large conductance mechanosensitive channel protein compare
Atu3593 -0.7 -3.7 hypothetical protein compare
Atu0467 -0.7 -2.3 hypothetical protein compare
Atu1722 -0.7 -2.7 hypothetical protein compare
Atu1535 -0.7 -1.9 cytochrome c oxidase, FixQ chain compare
Atu0986 -0.7 -1.0 hypothetical protein compare
Atu4884 -0.7 -2.1 hypothetical protein compare
Atu0464 -0.7 -3.5 hypothetical protein compare
Atu2567 -0.7 -2.1 thiamin biosynthesis protein ThiG compare
Atu0544 -0.7 -1.0 hypothetical protein compare
Atu0726 -0.7 -4.1 ring hydroxylating dioxygenase, alpha-subunit compare
Atu4866 -0.7 -4.5 hypothetical protein compare
Atu2800 -0.7 -1.3 precorrin-3B C17-methyltransferase compare
Atu1223 -0.7 -0.9 hypothetical protein compare
Atu2798 -0.6 -2.2 precorrin-6y methyltransferase compare
Atu0647 -0.6 -2.5 phosphoribosylamine--glycine ligase compare
Atu0041 -0.6 -1.1 glutamine amidotransferase compare
Atu5107 -0.6 -2.2 hypothetical protein compare
Atu0977 -0.6 -2.7 serine protease DO-like protease compare
Atu1468 -0.6 -3.5 hypothetical protein compare
Atu2504 -0.6 -3.1 transcriptional regulator, GntR family compare
Atu2067 -0.6 -0.8 hypothetical protein compare
Atu0510 -0.6 -3.7 pH adaption potassium efflux system protein compare
Atu4887 -0.6 -3.0 hypothetical protein compare
Atu0723 -0.6 -1.3 FAD dependent oxidoreductase compare
Atu5160 -0.6 -1.7 transcriptional regulator protein compare
Atu3315 -0.6 -2.6 UDP-glucose 4-epimerase compare
Atu4093 -0.6 -2.3 hypothetical protein compare
Atu3017 -0.6 -1.1 phosphoglyceromutase compare
Atu6197 -0.6 -1.7 agrocinopine phosphodiesterase compare
Atu1891 -0.6 -1.5 cobalamin biosynthesis protein compare
Atu3014 -0.6 -1.8 hypothetical protein compare
Atu0029 -0.6 -2.1 S-adenosylhomocysteine hydrolase compare
Atu2799 -0.6 -1.7 precorrin-6x reductase compare
Atu3697 -0.6 -1.8 ATP-dependent protease LA 2 compare
Atu0269 -0.6 -2.2 exodeoxyribonuclease VII large subunit compare
Atu4880 -0.6 -3.9 AraC family transcriptional regulator compare
Atu8144 -0.6 -1.9 hypothetical protein compare
Atu0153 -0.6 -1.4 transcriptional regulator, Fur family compare
Atu2204 -0.6 -1.2 hypothetical protein compare
Atu1302 -0.6 -1.8 hypothetical protein compare
Atu3472 -0.6 -1.7 2-oxoisovalerate dehydrogenase subunit beta compare
Atu8190 -0.6 -2.1 hypothetical protein compare
Atu2125 -0.6 -0.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu3750 -0.6 -1.2 thiamine-phosphate pyrophosphorylase compare
Atu2801 -0.5 -1.6 precorrin-2 C20 methyltransferase compare
Atu4890 -0.5 -1.1 IS426 transposase compare
Atu2796 -0.5 -2.2 precorrin-4 C11-methyltransferase compare
Atu8035 -0.5 -1.3 hypothetical protein compare
Atu5146 -0.5 -0.7 hypothetical protein compare
Atu2650 -0.5 -3.2 glycerol-3-phosphate dehydrogenase compare
Atu3012 -0.5 -1.3 hypothetical protein compare
Atu4852 -0.5 -2.8 hypothetical protein compare
Atu8202 -0.5 -2.1 hypothetical protein compare
Atu0401 -0.5 -2.0 fructokinase compare
Atu3668 -0.5 -1.2 siderophore biosynthesis protein compare
Atu2714 -0.5 -3.3 ABC transporter, substrate binding protein (thiamine) compare
Atu4108 -0.5 -3.3 ribonuclease D compare
Atu0421 -0.5 -0.8 ABC transporter, membrane spanning protein compare
Atu2484 -0.5 -1.0 hypothetical protein compare
Atu0953 -0.5 -0.5 hypothetical protein compare
Atu4614 -0.5 -2.3 glycosyltransferase compare
Atu0038 -0.5 -1.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0030 -0.5 -0.8 phosphocarrier protein HPr compare
Atu3267 -0.5 -1.3 dipeptide ABC transporter permease compare
Atu3727 -0.5 -1.4 hypothetical protein compare
Atu8185 -0.5 -1.9 hypothetical protein compare
Atu2169 -0.5 -2.0 hypothetical protein compare
Atu8128 -0.5 -2.4 putative bacteriophage P2 tail protein compare
Atu0876 -0.5 -0.7 superoxide dismutase compare
Atu2766 -0.5 -4.2 NAD-glutamate dehydrogenase compare
Atu2475 -0.5 -2.5 ABC transporter, membrane spanning protein compare
Atu0236 -0.5 -1.2 hypothetical protein compare
Atu1463 -0.5 -2.6 glycine cleavage system component H compare
Atu0931 -0.5 -2.8 penicillin binding protein compare
Atu0535 -0.5 -1.9 hypothetical protein compare
Atu3483 -0.5 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2526 -0.5 -1.5 hypothetical protein compare
Atu4882 -0.5 -1.3 hypothetical protein compare
Atu2802 -0.5 -2.5 precorrin-8X methylmutase compare
Atu3578 -0.5 -1.9 glycerol-3-phosphate dehydrogenase compare
Atu2073 -0.5 -1.6 membrane protein compare
Atu0458 -0.5 -2.4 hypothetical protein compare
Atu8194 -0.5 -2.0 hypothetical protein compare
Atu3474 -0.5 -3.3 acyl-CoA dehydrogenase compare
Atu3016 -0.5 -2.4 phosphoglyceromutase compare
Atu3443 -0.5 -1.1 hypothetical protein compare
Atu0997 -0.4 -1.9 hypothetical protein compare
Atu3690 -0.4 -2.2 iron (III ABC transporter permease dicitrate ABC transporter permease compare
Atu3048 -0.4 -2.6 oligopeptide ABC transporter permease compare
Atu0690 -0.4 -1.0 hypothetical protein compare
Atu4527 -0.4 -0.9 hypothetical protein compare
Atu3739 -0.4 -1.1 phosphoglycerate kinase compare
Atu2344 -0.4 -1.0 lactoylglutathione lyase compare
Atu0062 -0.4 -2.7 transcriptional regulator, ROK family compare
Atu3510 -0.4 -0.9 amidohydrolase compare
Atu5443 -0.4 -1.9 TetR family transcriptional regulator compare
Atu5169 -0.4 -1.6 type IV secretion protein AvhB8 compare
Atu3353 -0.4 -3.2 mannose-1-phosphate guanylyltransferase compare
Atu0427 -0.4 -1.8 hypothetical protein compare
Atu1286 -0.4 -1.5 hypothetical protein compare
Atu0925 -0.4 -1.2 hypothetical protein compare
Atu0479 -0.4 -2.3 ABC transporter, substrate binding protein (amino acid) compare
Atu1801 -0.4 -1.2 hypothetical protein compare
Atu4874 -0.4 -2.7 hypothetical protein compare
Atu1515 -0.4 -1.6 hypothetical protein compare
Atu5046 -0.4 -1.5 hypothetical protein compare
Atu0696 -0.4 -1.7 phosphatase compare
Atu3416 -0.4 -1.6 ABC transporter substrate binding protein compare
Atu3679 -0.4 -2.8 siderophore biosynthesis protein compare
Atu2238 -0.4 -2.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1475 -0.4 -1.0 hypothetical protein compare
Atu1902 -0.4 -1.9 transketolase compare
Atu6107 -0.4 -1.1 hypothetical protein compare
Atu0566 -0.4 -0.8 hypothetical protein compare
Atu2795 -0.4 -1.7 cobalamin biosynthetic protein compare
Atu1588 -0.4 -2.1 homoserine dehydrogenase compare
Atu4857 -0.4 -2.6 mobilization protein C compare
Atu0135 -0.4 -1.3 uracil phosphoribosyltransferase compare
Atu5125 -0.4 -1.5 GntR family transcriptional regulator compare
Atu0361 -0.4 -0.9 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Trimethoprim across organisms