Experiment set4IT074 for Pseudomonas simiae WCS417

Compare to:

LB with Cisplatin 0.01 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_24705 -6.3 -5.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_20800 -5.3 -9.6 recombination protein RecR conserved
PS417_05815 -5.3 -5.2 recombinase RecA compare
PS417_15115 -5.3 -5.5 exonuclease SbcD conserved
PS417_27870 -5.2 -5.0 ATP-dependent DNA helicase RecG compare
PS417_10725 -5.2 -7.0 excinuclease ABC subunit C conserved
PS417_27800 -5.1 -6.9 exodeoxyribonuclease III compare
PS417_15120 -5.0 -13.1 chromosome segregation protein SMC conserved
PS417_18685 -4.9 -12.8 excinuclease ABC subunit B conserved
PS417_15095 -4.6 -4.8 hypothetical protein compare
PS417_28070 -4.4 -6.5 phosphate ABC transporter ATP-binding protein compare
PS417_25395 -4.4 -14.5 excinuclease ABC subunit A conserved
PS417_24070 -4.3 -9.8 recombination and repair protein conserved
PS417_27300 -4.0 -1.4 cell division protein ZapA compare
PS417_15110 -4.0 -10.1 protein BatD compare
PS417_05820 -4.0 -3.2 recombinase RecX compare
PS417_15105 -3.8 -8.2 membrane protein compare
PS417_26370 -3.8 -3.9 RNA helicase compare
PS417_27435 -3.8 -8.8 polyphosphate kinase compare
PS417_05695 -3.7 -6.3 transcriptional regulator compare
PS417_00015 -3.7 -8.4 recombinase RecF conserved
PS417_28080 -3.5 -11.6 phosphate ABC transporter permease compare
PS417_15090 -3.5 -4.0 hypothetical protein compare
PS417_24305 -3.4 -6.0 DNA repair protein RadA conserved
PS417_28085 -3.4 -8.3 phosphate-binding protein compare
PS417_07635 -3.4 -12.1 transcription-repair coupling factor conserved
PS417_22450 -3.4 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_27795 -3.3 -1.6 orotate phosphoribosyltransferase compare
PS417_00405 -3.2 -8.1 DNA polymerase I compare
PS417_13500 -3.1 -12.6 ATP-dependent DNA helicase conserved
PS417_08650 -3.1 -3.9 transcriptional regulator compare
PS417_15085 -3.1 -6.3 ATPase AAA compare
PS417_27865 -3.1 -3.1 LysR family transcriptional regulator compare
PS417_22445 -3.0 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_06510 -3.0 -4.5 ATP-dependent DNA helicase DinG compare
PS417_04595 -3.0 -3.6 cell division protein MraZ compare
PS417_06245 -3.0 -2.8 zinc metallopeptidase RseP compare
PS417_23025 -2.9 -6.5 murein transglycosylase compare
PS417_22855 -2.9 -5.1 ssDNA exonuclease RecJ conserved
PS417_18545 -2.9 -3.5 cell division protein compare
PS417_00370 -2.9 -1.7 hypothetical protein compare
PS417_02555 -2.8 -12.9 exoribonuclease R compare
PS417_16490 -2.7 -2.9 cell division protein FtsK compare
PS417_23770 -2.7 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_24155 -2.7 -3.6 ATP-binding protein compare
PS417_23900 -2.6 -12.5 poly(A) polymerase compare
PS417_19350 -2.5 -4.8 GTP cyclohydrolase compare
PS417_28075 -2.5 -5.8 phosphate ABC transporter permease compare
PS417_05200 -2.5 -3.1 DNA recombination protein RecO compare
PS417_22895 -2.5 -8.4 tyrosine recombinase XerD compare
PS417_00045 -2.5 -2.8 glycerol acyltransferase compare
PS417_21430 -2.5 -3.1 3-oxoacyl-ACP synthase compare
PS417_02280 -2.4 -2.8 GlcNAc-PI de-N-acetylase compare
PS417_23825 -2.3 -7.9 penicillin-binding protein compare
PS417_00705 -2.3 -2.0 MarR family transcriptional regulator compare
PS417_22575 -2.3 -8.7 exonuclease I compare
PS417_22690 -2.3 -6.0 phosphogluconate dehydratase compare
PS417_24630 -2.3 -2.8 ATP-binding protein compare
PS417_27595 -2.3 -3.3 recombinase XerC compare
PS417_07565 -2.2 -3.0 hypothetical protein compare
PS417_15100 -2.1 -2.0 BatB protein compare
PS417_26990 -2.1 -1.7 RNA pyrophosphohydrolase compare
PS417_19950 -2.0 -5.4 ATP-dependent DNA helicase RecQ conserved
PS417_05975 -2.0 -1.8 chemotaxis protein CheW compare
PS417_08110 -2.0 -6.0 methylthioribose-1-phosphate isomerase conserved
PS417_01600 -2.0 -7.1 peptidase M23 compare
PS417_27585 -2.0 -2.7 diaminopimelate epimerase compare
PS417_05055 -2.0 -3.0 hypothetical protein compare
PS417_23820 -2.0 -8.1 hypothetical protein compare
PS417_01965 -2.0 -2.4 fimbriae biosynthesis protein compare
PS417_07530 -1.9 -7.3 multidrug transporter compare
PS417_20880 -1.9 -3.3 GntR family transcriptional regulator compare
PS417_13495 -1.8 -3.5 nuclease compare
PS417_25710 -1.8 -1.9 indole-3-glycerol-phosphate synthase compare
PS417_07875 -1.7 -1.3 hypothetical protein compare
PS417_00345 -1.7 -2.4 copper-binding protein compare
PS417_04475 -1.7 -3.7 hypothetical protein compare
PS417_09325 -1.6 -5.2 peptidase S41 compare
PS417_03300 -1.6 -3.0 alanine acetyltransferase compare
PS417_00550 -1.6 -1.4 hypothetical protein compare
PS417_01855 -1.6 -2.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_10675 -1.6 -1.3 TetR family transcriptional regulator compare
PS417_26985 -1.6 -6.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08155 -1.5 -1.3 integration host factor subunit beta compare
PS417_12310 -1.5 -7.7 methionine synthase compare
PS417_08685 -1.5 -1.9 flagellar hook-length control protein FliK compare
PS417_20875 -1.5 -4.8 chromosome segregation protein SMC compare
PS417_16415 -1.5 -4.0 tRNA 2-thiocytidine biosynthesis protein TtcA compare
PS417_27105 -1.5 -6.1 spermidine/putrescine ABC transporter permease conserved
PS417_05755 -1.5 -5.5 tail protein compare
PS417_22570 -1.5 -1.0 H-NS histone compare
PS417_09915 -1.5 -1.8 hypothetical protein compare
PS417_18310 -1.4 -1.5 hypothetical protein compare
PS417_01630 -1.4 -2.3 hypothetical protein compare
PS417_22210 -1.4 -2.0 AraC family transcriptional regulator compare
PS417_22795 -1.4 -2.5 exclusion suppressor FxsA compare
PS417_02950 -1.4 -2.0 tRNA-dihydrouridine synthase B compare
PS417_13785 -1.3 -3.2 hypothetical protein compare
PS417_20535 -1.3 -4.6 peptidylprolyl isomerase compare
PS417_24780 -1.3 -7.7 peptidase C13 compare
PS417_20985 -1.3 -2.3 porin compare
PS417_18635 -1.3 -1.9 4-hydroxybenzoyl-CoA thioesterase compare
PS417_27245 -1.3 -4.0 aminotransferase DegT compare
PS417_18530 -1.2 -5.9 O-succinylhomoserine sulfhydrylase compare
PS417_05240 -1.2 -6.7 Lon protease compare
PS417_17610 -1.2 -1.1 AsnC family transcriptional regulator compare
PS417_14805 -1.2 -1.9 AraC family transcriptional regulator compare
PS417_27115 -1.2 -6.2 putrescine ABC transporter, ATPase component (from data) compare
PS417_22830 -1.2 -7.2 DNA polymerase IV conserved
PS417_08410 -1.2 -2.5 hypothetical protein compare
PS417_22825 -1.2 -3.8 hypothetical protein compare
PS417_19720 -1.2 -1.2 DNA-binding protein compare
PS417_05570 -1.2 -2.2 DeoR faimly transcriptional regulator compare
PS417_00650 -1.2 -1.0 LysR family transcriptional regulator compare
PS417_01990 -1.2 -4.2 cell division protein compare
PS417_14935 -1.2 -2.2 transposase compare
PS417_27005 -1.2 -1.0 membrane protein compare
PS417_09235 -1.2 -1.0 molecular chaperone compare
PS417_11485 -1.1 -1.9 AraC family transcriptional regulator compare
PS417_24135 -1.1 -2.2 hypothetical protein compare
PS417_14835 -1.1 -3.8 amidase compare
PS417_15745 -1.1 -1.8 lipid carrier protein compare
PS417_02270 -1.1 -2.3 carbamoyltransferase compare
PS417_09565 -1.1 -5.5 DNA polymerase II conserved
PS417_00535 -1.1 -1.6 Holliday junction resolvase compare
PS417_04915 -1.1 -1.2 glutamine ABC transporter ATP-binding protein compare
PS417_07120 -1.1 -4.6 RNA polymerase sigma-H factor compare
PS417_18420 -1.1 -2.5 deoxyribonuclease compare
PS417_03935 -1.1 -3.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_15470 -1.1 -3.8 saccharopine dehydrogenase compare
PS417_04835 -1.1 -2.4 hemolysin D compare
PS417_27940 -1.1 -1.2 type VI secretion protein compare
PS417_25860 -1.1 -2.9 glycerol-3-phosphate acyltransferase compare
PS417_26525 -1.0 -3.7 DEAD/DEAH box helicase compare
PS417_19675 -1.0 -2.3 chemotaxis protein CheY compare
PS417_02405 -1.0 -3.9 hypothetical protein compare
PS417_04270 -1.0 -5.6 ribonuclease G compare
PS417_17620 -1.0 -5.0 biotin synthase compare
PS417_03290 -1.0 -4.1 hypothetical protein compare
PS417_17615 -1.0 -3.6 leucyl-tRNA synthetase compare
PS417_05965 -1.0 -2.6 chemotaxis protein CheW compare
PS417_04380 -1.0 -1.1 ABC transporter permease compare
PS417_02395 -1.0 -1.4 DNA topoisomerase IV subunit B compare
PS417_20775 -1.0 -3.6 coproporphyrinogen III oxidase compare
PS417_02210 -1.0 -4.3 diguanylate cyclase compare
PS417_20855 -1.0 -1.0 hypothetical protein compare
PS417_04170 -1.0 -3.5 stringent starvation protein A compare
PS417_08580 -1.0 -3.4 histidine kinase compare
PS417_21630 -1.0 -2.0 magnesium transporter compare
PS417_06095 -1.0 -1.5 energy transducer TonB compare
PS417_27110 -1.0 -3.2 spermidine/putrescine ABC transporter permease compare
PS417_15705 -0.9 -1.5 nitrate reductase compare
PS417_15480 -0.9 -1.8 ABC transporter substrate-binding protein compare
PS417_15780 -0.9 -2.0 membrane protein compare
PS417_17490 -0.9 -1.9 ABC transporter ATP-binding protein compare
PS417_03455 -0.9 -1.2 type III secretion protein compare
PS417_18885 -0.9 -1.6 GntR family transcriptional regulator compare
PS417_01875 -0.9 -1.7 polyhydroxyalkanoic acid system protein compare
PS417_18775 -0.9 -2.2 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_03280 -0.9 -5.0 chromosome partitioning protein ParA compare
PS417_26800 -0.9 -4.0 cell division protein FtsX compare
PS417_03285 -0.9 -2.6 chromosome partitioning protein compare
PS417_09210 -0.9 -1.1 TetR family transcriptional regulator compare
PS417_13490 -0.9 -1.2 hypothetical protein compare
PS417_22155 -0.9 -3.7 ATPase compare
PS417_12595 -0.9 -0.9 transcriptional regulator compare
PS417_06825 -0.9 -1.2 hypothetical protein compare
PS417_01140 -0.9 -2.5 taurine ABC transporter permease compare
PS417_04590 -0.9 -3.0 methyltransferase compare
PS417_14050 -0.9 -2.3 recombinase compare
PS417_06165 -0.9 -3.3 thiamine biosynthesis protein ThiF compare
PS417_28225 -0.9 -1.4 hypothetical protein compare
PS417_01560 -0.9 -1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_27075 -0.9 -3.4 thiol-disulfide isomerase compare
PS417_15895 -0.8 -1.7 iron dicitrate transport regulator FecR compare
PS417_25680 -0.8 -3.2 short-chain dehydrogenase compare
PS417_12870 -0.8 -1.0 enoyl-CoA hydratase compare
PS417_20715 -0.8 -2.5 cytochrome Cbb3 compare
PS417_05525 -0.8 -2.9 Fis family transcriptional regulator compare
PS417_26815 -0.8 -1.3 peptidase M16 compare
PS417_02475 -0.8 -1.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_05710 -0.8 -1.9 hypothetical protein compare
PS417_14925 -0.8 -1.7 2-methylcitrate dehydratase compare
PS417_28185 -0.8 -1.8 homocysteine methyltransferase compare
PS417_01620 -0.8 -0.8 preprotein translocase subunit SecB compare
PS417_01145 -0.8 -0.9 taurine transporter ATP-binding subunit compare
PS417_16500 -0.8 -3.4 arginyl-tRNA-protein transferase compare
PS417_23650 -0.8 -4.1 Kynureninase (EC 3.7.1.3) (from data) compare
PS417_21625 -0.8 -0.7 DNA-binding protein compare
PS417_27205 -0.8 -2.0 adenylate cyclase compare
PS417_23160 -0.8 -1.8 50S rRNA methyltransferase compare
PS417_24905 -0.8 -3.6 DNA-binding protein compare
PS417_23775 -0.8 -0.6 exodeoxyribonuclease V subunit beta compare
PS417_20785 -0.8 -2.8 transcriptional regulator compare
PS417_21380 -0.8 -2.3 GntR family transcriptional regulator compare
PS417_09625 -0.8 -2.4 sugar ABC transporter substrate-binding protein compare
PS417_21670 -0.8 -2.1 6,7-dimethyl-8-ribityllumazine synthase compare
PS417_10715 -0.8 -1.5 Cro/Cl family transcriptional regulator compare
PS417_19565 -0.8 -2.9 TetR family transcriptional regulator compare
PS417_06540 -0.8 -0.9 membrane protein compare


Specific Phenotypes

For 28 genes in this experiment

For stress Cisplatin in Pseudomonas simiae WCS417

For stress Cisplatin across organisms