Experiment set4IT074 for Agrobacterium fabrum C58

Compare to:

R2A with Novobiocin sodium salt 0.002 mM

200 most important genes:

  gene name fitness t score description  
Atu1446 -5.3 -3.4 two component response regulator compare
Atu3763 -3.9 -2.9 hypothetical protein compare
Atu0723 -3.4 -3.5 FAD dependent oxidoreductase compare
Atu0971 -3.1 -7.1 two component sensor kinase compare
Atu4217 -3.0 -2.8 TetR family transcriptional regulator compare
Atu2728 -3.0 -6.7 beta (1-->2) glucan export ATP-binding protein compare
Atu0953 -3.0 -2.0 hypothetical protein compare
Atu0346 -2.9 -3.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2207 -2.8 -6.3 two component sensor kinase compare
Atu2585 -2.5 -4.7 hypothetical protein compare
Atu2710 -2.4 -6.9 hypothetical protein compare
Atu1646 -2.4 -5.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu4149 -2.4 -9.3 UDP-glucose 6-dehydrogenase compare
Atu8167 -2.3 -11.1 putative transmembrane protein compare
Atu1447 -2.3 -2.4 two component sensor kinase compare
Atu3730 -2.3 -2.3 hypothetical protein compare
Atu8087 -2.1 -1.5 putative peptidoglycan binding protein compare
Atu0041 -2.1 -2.1 glutamine amidotransferase compare
Atu0103 -2.0 -8.5 penicillin-binding protein compare
Atu2590 -2.0 -5.7 hypothetical protein compare
Atu4072 -2.0 -2.7 nodulation protein N compare
Atu2591 -2.0 -5.7 glucosyltransferase compare
Atu2577 -2.0 -13.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1647 -1.9 -7.0 ABC transporter, membrane spanning protein compare
Atu3634 -1.8 -5.2 penicillin-binding protein dacf precursor compare
Atu2582 -1.8 -5.2 UDP-glucose/GDP-mannose dehydrogenase compare
Atu2583 -1.8 -9.1 glycosyltransferase compare
Atu2439 -1.8 -1.1 hypothetical protein compare
Atu1855 -1.8 -7.8 MFS permease compare
Atu2392 -1.8 -12.0 HlyD family secretion protein compare
Atu0972 -1.7 -5.5 lipA protein compare
Atu2393 -1.7 -13.9 Acr family transporter compare
Atu0422 -1.7 -1.9 ABC transporter, membrane spanning protein compare
Atu2692 -1.7 -2.9 intracellular septation protein compare
Atu2584 -1.6 -4.6 hypothetical protein compare
Atu2592 -1.6 -4.8 hypothetical protein compare
Atu0184 -1.6 -2.5 glucokinase compare
Atu4148 -1.5 -3.6 UDP-glucuronic acid epimerase compare
Atu1644 -1.5 -3.1 hypothetical protein compare
Atu0399 -1.5 -4.7 dihydroorotase compare
Atu1163 -1.5 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1619 -1.4 -2.6 protein-export membrane protein SECG compare
Atu1028 -1.4 -3.1 hypothetical protein compare
Atu2616 -1.4 -7.5 hypothetical protein compare
Atu0040 -1.4 -1.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2052 -1.4 -5.4 hypothetical protein compare
Atu3468 -1.4 -1.2 hypothetical protein compare
Atu2722 -1.4 -7.1 porin compare
Atu5160 -1.4 -3.6 transcriptional regulator protein compare
Atu0769 -1.3 -1.5 protoheme IX farnesyltransferase compare
Atu1175 -1.3 -1.8 hypothetical protein compare
Atu0687 -1.3 -1.8 hypothetical protein compare
Atu1687 -1.3 -4.2 anthranilate phosphoribosyltransferase compare
Atu1774 -1.3 -6.6 ABC transporter, substrate binding protein (peptide) compare
Atu6098 -1.3 -0.7 transcriptional regulator, HTH family compare
Atu1645 -1.3 -5.1 ABC transporter, substrate binding protein compare
Atu2067 -1.3 -1.3 hypothetical protein compare
Atu2640 -1.2 -4.1 hypothetical protein compare
Atu0434 -1.2 -1.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0086 -1.2 -1.1 ribosome-binding factor A compare
Atu3353 -1.2 -6.1 mannose-1-phosphate guanylyltransferase compare
Atu4773 -1.2 -1.4 two component response regulator compare
Atu1688 -1.1 -2.9 indole-3-glycerol-phosphate synthase compare
Atu0486 -1.1 -5.1 dihydroorotate dehydrogenase compare
Atu3486 -1.1 -2.7 DeoR family transcriptional regulator compare
Atu2183 -1.1 -5.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4451 -1.1 -6.4 mannitol 2-dehydrogenase compare
Atu2683 -1.1 -1.6 hypothetical protein compare
Atu4161 -1.1 -1.8 hypothetical protein compare
Atu1355 -1.1 -4.6 hypothetical protein compare
Atu1466 -1.1 -1.6 hypothetical protein compare
Atu0647 -1.1 -4.4 phosphoribosylamine--glycine ligase compare
Atu0565 -1.1 -2.8 hypothetical protein compare
Atu2368 -1.0 -1.3 hypothetical protein compare
Atu3727 -1.0 -3.2 hypothetical protein compare
Atu8159 -1.0 -2.5 hypothetical protein compare
Atu1359 -1.0 -1.0 dnaK deletion suppressor protein compare
Atu0190 -1.0 -4.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0400 -1.0 -3.9 orotate phosphoribosyltransferase compare
Atu4418 -1.0 -3.6 glutaryl-CoA dehydrogenase compare
Atu1308 -1.0 -3.3 aspartate carbamoyl transferase catalytic subunit compare
Atu1323 -1.0 -2.0 hypothetical protein compare
Atu2289 -1.0 -5.8 anthranilate synthase component I and II compare
Atu2484 -1.0 -1.5 hypothetical protein compare
Atu2200 -1.0 -2.8 cold shock protein compare
Atu8025 -1.0 -1.2 hypothetical protein compare
Atu1307 -1.0 -3.0 dihydroorotase compare
Atu0931 -1.0 -5.1 penicillin binding protein compare
Atu3598 -1.0 -1.3 thiol:disulfide interchange protein compare
Atu0298 -1.0 -3.3 orotidine 5 compare
Atu0361 -1.0 -2.2 transcriptional regulator compare
Atu3183 -1.0 -0.9 hypothetical protein compare
Atu2113 -1.0 -2.1 N-acetylmuramoyl-L-alanine amidase compare
Atu2615 -0.9 -4.9 hypothetical protein compare
Atu6195 -0.9 -2.4 conserved hypothetical protein compare
Atu8180 -0.9 -3.2 hypothetical protein compare
Atu3798 -0.9 -5.3 TetR family transcriptional regulator compare
Atu3120 -0.9 -1.0 hypothetical protein compare
Atu1845 -0.9 -3.2 phosphoribosylformylglycinamidine synthase I compare
Atu1149 -0.9 -1.0 adenylate cyclase compare
Atu2304 -0.9 -5.7 bacteroid development protein compare
Atu4614 -0.8 -5.1 glycosyltransferase compare
Atu2205 -0.8 -1.6 transcriptional regulator, MarR family compare
Atu2551 -0.8 -5.8 RND multidrug efflux transporter compare
Atu4063 -0.8 -5.1 O-linked GlcNAc transferase compare
Atu0801 -0.8 -5.9 chromosome segregation protein compare
Atu8144 -0.8 -2.7 hypothetical protein compare
Atu2787 -0.8 -0.8 hypothetical protein compare
Atu0479 -0.8 -2.9 ABC transporter, substrate binding protein (amino acid) compare
Atu4346 -0.8 -2.4 hypothetical protein compare
Atu3886 -0.8 -4.7 lysophospholipase compare
Atu4711 -0.8 -3.7 two component sensor kinase compare
Atu0097 -0.8 -4.8 hypothetical protein compare
Atu1708 -0.8 -4.3 hypothetical protein compare
Atu3001 -0.8 -2.8 hypothetical protein compare
Atu2550 -0.8 -5.6 RND multidrug efflux membrane permease compare
Atu0188 -0.8 -1.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0189 -0.8 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu4613 -0.8 -5.2 glycosyltransferase compare
Atu0419 -0.8 -1.3 two component sensor kinase compare
Atu1714 -0.8 -1.1 exonuclease III compare
Atu1075 -0.8 -3.5 amidophosphoribosyltransferase compare
Atu6114 -0.7 -1.8 hypothetical protein compare
Atu0894 -0.7 -1.9 ABC transporter, membrane spanning protein compare
Atu1127 -0.7 -1.7 molybdopterin converting factor small subunit compare
Atu5164 -0.7 -0.6 type IV secretion protein AvhB3 compare
Atu2730 -0.7 -5.1 beta (1-->2) glucan biosynthesis protein compare
Atu2803 -0.7 -1.7 Cobalamin biosynthesis associated protein compare
Atu4617 -0.7 -4.8 dTDP-D-glucose-4,6-dehydratase compare
Atu4677 -0.7 -0.5 hypothetical protein compare
Atu1468 -0.7 -3.1 hypothetical protein compare
Atu0421 -0.7 -1.0 ABC transporter, membrane spanning protein compare
Atu1360 -0.7 -4.3 hypothetical protein compare
Atu3311 -0.7 -5.1 phosphomannose isomerase compare
Atu4618 -0.7 -4.9 dTDP-rhamnose-3,5-epimerase compare
Atu2193 -0.7 -0.8 hypothetical protein compare
Atu1891 -0.7 -2.4 cobalamin biosynthesis protein compare
Atu2040 -0.7 -2.9 phosphoserine phosphatase compare
Atu2073 -0.7 -2.0 membrane protein compare
Atu3485 -0.7 -4.2 short chain dehydrogenase compare
Atu0926 -0.7 -1.9 hypothetical protein compare
Atu8161 -0.7 -1.1 hypothetical protein compare
Atu0332 -0.7 -3.7 RNA polymerase sigma-54 factor compare
Atu1467 -0.7 -1.7 hypothetical protein compare
Atu8012 -0.7 -0.9 hypothetical protein compare
Atu0598 -0.7 -3.3 phosphogluconate dehydratase compare
Atu8131 -0.7 -4.2 pH adaption potassium efflux system protein compare
Atu1364 -0.7 -2.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2729 -0.7 -1.8 hypothetical protein compare
Atu1707 -0.7 -4.3 hypothetical protein compare
Atu1484 -0.7 -2.1 transcriptional regulator compare
Atu2057 -0.7 -1.2 DNA helicase II compare
Atu0126 -0.6 -2.5 membrane lipoprotein compare
Atu2127 -0.6 -2.4 L-carnitine dehydratase compare
Atu2798 -0.6 -1.8 precorrin-6y methyltransferase compare
Atu4884 -0.6 -2.4 hypothetical protein compare
Atu2187 -0.6 -1.8 transcriptional regulator, ArsR family compare
Atu0533 -0.6 -1.2 putative inhibitor of septum formation compare
Atu0272 -0.6 -2.9 transcriptional regulator, MarR family compare
Atu2504 -0.6 -2.8 transcriptional regulator, GntR family compare
Atu3469 -0.6 -0.9 phosphoglyceromutase compare
Atu2766 -0.6 -5.2 NAD-glutamate dehydrogenase compare
Atu0768 -0.6 -3.9 cytochrome-c oxidase chain I compare
Atu3034 -0.6 -2.6 ROK family transcriptional regulator compare
Atu0528 -0.6 -2.1 large conductance mechanosensitive channel protein compare
Atu5047 -0.6 -1.5 hypothetical protein compare
Atu0431 -0.6 -1.8 apaG protein compare
Atu0788 -0.6 -1.9 hypothetical protein compare
Atu0956 -0.6 -1.9 phage prohead protease compare
Atu2800 -0.6 -1.7 precorrin-3B C17-methyltransferase compare
Atu0739 -0.6 -2.3 hypothetical protein compare
Atu3750 -0.6 -1.7 thiamine-phosphate pyrophosphorylase compare
Atu2217 -0.6 -2.0 hypothetical protein compare
Atu0756 -0.6 -3.2 phosphoglycerate mutase compare
Atu4854 -0.6 -2.2 hypothetical protein compare
Atu1592 -0.6 -2.6 hypothetical protein compare
Atu4615 -0.6 -3.8 glucose-1-phosphate thymidylyltransferase compare
Atu1260 -0.6 -1.1 hypothetical protein compare
Atu2740 -0.6 -2.5 transcriptional regulator, GntR family compare
Atu3739 -0.6 -1.5 phosphoglycerate kinase compare
Atu1140 -0.6 -2.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4889 -0.6 -2.6 hypothetical protein compare
Atu1056 -0.6 -2.5 hypothetical protein compare
Atu5513 -0.6 -0.6 cold shock protein compare
Atu3044 -0.6 -2.1 asparaginase compare
Atu1621 -0.6 -3.0 hypothetical protein compare
Atu0038 -0.6 -1.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4166 -0.6 -1.1 UDP-glucose 4-epimerase compare
Atu5146 -0.6 -1.2 hypothetical protein compare
Atu8023 -0.6 -1.1 hypothetical protein compare
Atu1031 -0.6 -1.2 hypothetical protein compare
Atu0048 -0.6 -4.2 hypothetical protein compare
Atu1131 -0.5 -2.7 outer membrane protein compare
Atu5045 -0.5 -1.0 hypothetical protein compare
Atu0039 -0.5 -1.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu0703 -0.5 -1.2 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1801 -0.5 -1.6 hypothetical protein compare
Atu3443 -0.5 -1.7 hypothetical protein compare
Atu2043 -0.5 -2.6 htrA family protein compare
Atu4075 -0.5 -3.0 glycogen synthase compare


Specific Phenotypes

For 4 genes in this experiment

For stress Novobiocin sodium salt in Agrobacterium fabrum C58

For stress Novobiocin sodium salt across organisms