Experiment set4IT073 for Pseudomonas simiae WCS417

Compare to:

LB with Paraquat dichloride 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_24835 -4.9 -5.4 hypothetical protein compare
PS417_27800 -4.7 -8.0 exodeoxyribonuclease III compare
PS417_02280 -4.7 -3.5 GlcNAc-PI de-N-acetylase compare
PS417_26335 -4.6 -4.5 BetI family transcriptional regulator compare
PS417_26340 -3.4 -7.0 betaine-aldehyde dehydrogenase conserved
PS417_26345 -3.4 -8.2 choline dehydrogenase conserved
PS417_02270 -3.0 -8.3 carbamoyltransferase compare
PS417_24370 -2.9 -1.5 (2Fe-2S)-binding protein compare
PS417_23770 -2.8 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_24155 -2.8 -3.8 ATP-binding protein compare
PS417_02555 -2.8 -13.3 exoribonuclease R compare
PS417_27870 -2.5 -5.9 ATP-dependent DNA helicase RecG compare
PS417_27245 -2.4 -6.4 aminotransferase DegT compare
PS417_04365 -2.4 -1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27740 -2.3 -13.2 MFS transporter conserved
PS417_08170 -2.1 -11.5 capsular biosynthesis protein compare
PS417_27865 -2.1 -3.5 LysR family transcriptional regulator compare
PS417_08410 -2.1 -3.4 hypothetical protein compare
PS417_01915 -2.1 -1.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_05975 -2.0 -1.9 chemotaxis protein CheW compare
PS417_23775 -1.9 -2.6 exodeoxyribonuclease V subunit beta compare
PS417_06540 -1.7 -2.7 membrane protein compare
PS417_27610 -1.6 -5.4 hypothetical protein compare
PS417_08540 -1.6 -3.2 RNA helicase compare
PS417_27605 -1.6 -6.0 hypothetical protein compare
PS417_17215 -1.6 -5.1 peptidylprolyl isomerase compare
PS417_24705 -1.5 -3.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_06370 -1.5 -1.7 cold-shock protein compare
PS417_05850 -1.5 -4.5 LysR family transcriptional regulator compare
PS417_02495 -1.5 -3.6 GTPase HflX compare
PS417_04170 -1.5 -3.4 stringent starvation protein A compare
PS417_21625 -1.4 -1.1 DNA-binding protein compare
PS417_04875 -1.4 -1.8 molybdenum cofactor biosynthesis protein MoaE compare
PS417_18355 -1.4 -5.8 DNA-binding protein compare
PS417_06685 -1.4 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_22375 -1.4 -1.0 cold-shock protein compare
PS417_06205 -1.3 -6.8 methionine aminopeptidase compare
PS417_23950 -1.3 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_21125 -1.3 -5.2 phosphoadenosine phosphosulfate reductase compare
PS417_13990 -1.3 -2.0 LysR family transcriptional regulator compare
PS417_03550 -1.3 -2.4 hypothetical protein compare
PS417_28515 -1.2 -3.6 16S rRNA methyltransferase compare
PS417_08730 -1.2 -2.5 cytochrome C compare
PS417_11830 -1.2 -2.5 membrane protein compare
PS417_27300 -1.2 -0.9 cell division protein ZapA compare
PS417_11930 -1.2 -6.0 hypothetical protein compare
PS417_27835 -1.2 -4.9 endoribonuclease compare
PS417_14115 -1.2 -4.5 molybdate ABC transporter substrate-binding protein compare
PS417_04650 -1.1 -0.7 D-alanine--D-alanine ligase compare
PS417_24235 -1.1 -2.6 hypothetical protein compare
PS417_00185 -1.1 -3.4 tryptophan synthase subunit beta compare
PS417_28070 -1.1 -4.5 phosphate ABC transporter ATP-binding protein compare
PS417_02690 -1.1 -4.1 N-acylglucosamine 2-epimerase compare
PS417_15225 -1.1 -3.4 alpha/beta hydrolase compare
PS417_03000 -1.1 -2.8 translation initiation factor Sui1 compare
PS417_08125 -1.1 -1.0 prephenate dehydratase compare
PS417_20855 -1.1 -1.4 hypothetical protein compare
PS417_01435 -1.1 -1.3 hypothetical protein compare
PS417_27195 -1.1 -1.1 N-acetylglutamate synthase compare
PS417_17780 -1.1 -1.2 Ais protein compare
PS417_17610 -1.0 -1.6 AsnC family transcriptional regulator compare
PS417_12005 -1.0 -2.9 hypothetical protein compare
PS417_00045 -1.0 -1.8 glycerol acyltransferase compare
PS417_22575 -1.0 -6.1 exonuclease I compare
PS417_18360 -1.0 -1.7 hypothetical protein compare
PS417_27360 -1.0 -4.0 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_20785 -1.0 -5.8 transcriptional regulator compare
PS417_00175 -1.0 -1.2 CigR compare
PS417_00660 -1.0 -2.6 DSBA oxidoreductase compare
PS417_12855 -1.0 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02485 -1.0 -3.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_16490 -1.0 -1.7 cell division protein FtsK compare
PS417_23135 -1.0 -1.9 GTP-binding protein compare
PS417_08135 -1.0 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15875 -1.0 -1.9 LuxR family transcriptional regulator compare
PS417_07620 -1.0 -1.7 beta-hexosaminidase compare
PS417_17945 -0.9 -1.0 hypothetical protein compare
PS417_06500 -0.9 -1.5 hypothetical protein compare
PS417_25635 -0.9 -3.3 biotin--protein ligase compare
PS417_02975 -0.9 -3.7 3-dehydroquinate dehydratase compare
PS417_25790 -0.9 -2.9 aminoglycoside phosphotransferase compare
PS417_08670 -0.9 -2.8 molybdopterin biosynthesis protein B compare
PS417_05100 -0.9 -1.5 RNA polymerase sigma factor compare
PS417_22450 -0.9 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_00405 -0.9 -4.9 DNA polymerase I compare
PS417_04865 -0.9 -2.0 molybdenum cofactor biosynthesis protein MoaC compare
PS417_00075 -0.9 -2.2 hypothetical protein compare
PS417_08665 -0.9 -3.6 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_01920 -0.9 -1.5 ATP-dependent protease subunit HslV compare
PS417_19055 -0.9 -3.0 ArsR family transcriptional regulator compare
PS417_23490 -0.9 -1.4 dihydrofolate reductase compare
PS417_02740 -0.9 -1.8 LysR family transcriptional regulator compare
PS417_05090 -0.9 -5.5 ferric citrate outer membrane transporter (fecA) (from data) compare
PS417_12660 -0.9 -1.3 hypothetical protein compare
PS417_21855 -0.9 -2.6 hypothetical protein compare
PS417_23250 -0.9 -3.8 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_08350 -0.9 -2.4 preprotein translocase subunit TatD compare
PS417_01145 -0.9 -1.0 taurine transporter ATP-binding subunit compare
PS417_06680 -0.8 -5.0 nuclease PIN compare
PS417_14240 -0.8 -2.5 isochorismatase compare
PS417_18545 -0.8 -2.3 cell division protein compare
PS417_20635 -0.8 -0.7 ABC transporter ATP-binding protein compare
PS417_01115 -0.8 -1.3 serine acetyltransferase compare
PS417_07305 -0.8 -1.5 3-beta hydroxysteroid dehydrogenase compare
PS417_01275 -0.8 -2.9 LysR family transcriptional regulator compare
PS417_18845 -0.8 -1.9 peptidase compare
PS417_26605 -0.8 -1.2 malonate decarboxylase subunit beta compare
PS417_24620 -0.8 -1.9 hypothetical protein compare
PS417_10725 -0.8 -2.9 excinuclease ABC subunit C compare
PS417_11075 -0.8 -1.6 hydroxypyruvate isomerase compare
PS417_27795 -0.8 -0.8 orotate phosphoribosyltransferase compare
PS417_22715 -0.8 -2.1 heme oxygenase compare
PS417_21395 -0.8 -3.9 radical SAM protein compare
PS417_17120 -0.8 -2.3 protein kinase compare
PS417_22445 -0.8 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_19430 -0.8 -2.2 ureidoglycolate hydrolase compare
PS417_19195 -0.8 -2.3 hypothetical protein compare
PS417_04090 -0.8 -2.8 hypothetical protein compare
PS417_07695 -0.8 -4.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_19500 -0.8 -2.2 antibiotic synthesis protein MbtH compare
PS417_22570 -0.8 -0.6 H-NS histone compare
PS417_26645 -0.8 -1.9 chemotaxis protein compare
PS417_01340 -0.8 -3.0 agmatine deiminase compare
PS417_09035 -0.8 -2.1 hypothetical protein compare
PS417_22815 -0.8 -3.6 permease compare
PS417_01265 -0.8 -4.2 CbbBc protein compare
PS417_14125 -0.8 -2.4 molybdenum ABC transporter ATP-binding protein compare
PS417_01305 -0.8 -2.9 Fis family transcriptional regulator compare
PS417_00945 -0.8 -1.7 sulfate ABC transporter ATP-binding protein compare
PS417_21085 -0.8 -2.1 GntR family transcriptional regulator compare
PS417_00995 -0.8 -1.5 alpha/beta hydrolase compare
PS417_13250 -0.7 -2.3 ABC transporter compare
PS417_20610 -0.7 -1.1 hypothetical protein compare
PS417_22980 -0.7 -2.4 GntR family transcriptional regulator compare
PS417_05510 -0.7 -3.1 alpha/beta hydrolase compare
PS417_19285 -0.7 -1.4 ankyrin compare
PS417_06995 -0.7 -2.0 tRNA-Gly compare
PS417_06645 -0.7 -4.4 RNA polymerase-associated protein RapA compare
PS417_13055 -0.7 -1.4 aminotransferase compare
PS417_16520 -0.7 -1.3 cold-shock protein compare
PS417_02175 -0.7 -1.3 transcriptional regulator compare
PS417_10425 -0.7 -1.2 hypothetical protein compare
PS417_06125 -0.7 -1.7 hypothetical protein compare
PS417_21065 -0.7 -1.5 3-methylitaconate isomerase compare
PS417_25270 -0.7 -1.7 NrdR family transcriptional regulator compare
PS417_14655 -0.7 -0.8 lysine transporter LysE compare
PS417_24570 -0.7 -2.8 AsnC family transcriptional regulator compare
PS417_15090 -0.7 -2.2 hypothetical protein compare
PS417_17490 -0.7 -1.4 ABC transporter ATP-binding protein compare
PS417_10335 -0.7 -1.9 peroxiredoxin compare
PS417_15750 -0.7 -1.8 protease compare
PS417_10860 -0.7 -1.7 flagellar basal body rod protein FlgG compare
PS417_17535 -0.7 -3.7 beta-lactamase compare
PS417_15095 -0.7 -1.9 hypothetical protein compare
PS417_15440 -0.7 -2.3 iron ABC transporter substrate-binding protein compare
PS417_27485 -0.7 -1.7 hypothetical protein compare
PS417_18040 -0.7 -1.0 general secretion pathway protein GspN compare
PS417_24745 -0.7 -1.8 gamma-glutamyl phosphate reductase compare
PS417_04115 -0.7 -1.8 alpha/beta hydrolase compare
PS417_26250 -0.7 -2.0 peptidase M19 compare
PS417_10865 -0.7 -1.3 GNAT family acetyltransferase compare
PS417_05025 -0.7 -1.1 maleylacetoacetate isomerase compare
PS417_04760 -0.7 -2.2 hypothetical protein compare
PS417_06710 -0.7 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_25650 -0.7 -3.0 anhydro-N-acetylmuramic acid kinase compare
PS417_15085 -0.7 -2.3 ATPase AAA compare
PS417_21850 -0.6 -0.9 LysR family transcriptional regulator compare
PS417_06175 -0.6 -2.4 cysteine sulfinate desulfinase compare
PS417_02360 -0.6 -1.3 nitrate reductase compare
PS417_03740 -0.6 -3.3 peptidylprolyl isomerase compare
PS417_05160 -0.6 -0.6 DNA polymerase III subunit chi compare
PS417_25645 -0.6 -2.6 peptidase M23 compare
PS417_00195 -0.6 -1.0 hypothetical protein compare
PS417_13565 -0.6 -2.9 permease compare
PS417_06620 -0.6 -1.5 hypothetical protein compare
PS417_06200 -0.6 -3.3 protein-PII uridylyltransferase compare
PS417_18775 -0.6 -1.8 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_10040 -0.6 -0.8 MFS transporter compare
PS417_01725 -0.6 -3.4 sulfonate ABC transporter substrate-binding protein compare
PS417_21500 -0.6 -2.7 C4 dicarboxylate transporter DctA (from data) compare
PS417_16510 -0.6 -1.7 Clp protease ClpX compare
PS417_12650 -0.6 -1.0 magnesium transporter compare
PS417_25705 -0.6 -1.9 lipoate--protein ligase compare
PS417_24710 -0.6 -2.8 lipoprotein compare
PS417_19675 -0.6 -2.7 chemotaxis protein CheY compare
PS417_00345 -0.6 -1.4 copper-binding protein compare
PS417_06040 -0.6 -1.7 hypothetical protein compare
PS417_05710 -0.6 -1.3 hypothetical protein compare
PS417_27595 -0.6 -1.6 recombinase XerC compare
PS417_14565 -0.6 -2.5 chemotaxis protein compare
PS417_10025 -0.6 -1.0 bacteriophage lambda NinG family protein compare
PS417_20480 -0.6 -1.3 hypothetical protein compare
PS417_00080 -0.6 -3.2 potassium transporter peripheral membrane component compare
PS417_23095 -0.6 -0.7 exodeoxyribonuclease compare
PS417_06075 -0.6 -1.2 hypothetical protein compare
PS417_14940 -0.6 -1.2 LysR family transcriptional regulator compare
PS417_00550 -0.6 -0.7 hypothetical protein compare
PS417_18490 -0.6 -1.3 hypothetical protein compare
PS417_21235 -0.6 -1.8 transglutaminase compare
PS417_11430 -0.6 -3.0 EamA compare


Specific Phenotypes

For 15 genes in this experiment

For stress Paraquat dichloride in Pseudomonas simiae WCS417

For stress Paraquat dichloride across organisms