Experiment set4IT073 for Agrobacterium fabrum C58

Compare to:

R2A with Phenazine methosulfate 0.05 mM

200 most important genes:

  gene name fitness t score description  
Atu0434 -3.6 -3.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0141 -3.3 -3.0 cytochrome O ubiquinol oxidase subunit I compare
Atu0051 -2.5 -6.8 two component sensor kinase compare
Atu0017 -2.2 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -2.2 -4.2 indole-3-glycerol-phosphate synthase compare
Atu1891 -2.2 -4.6 cobalamin biosynthesis protein compare
Atu3469 -2.1 -3.1 phosphoglyceromutase compare
Atu2289 -2.0 -8.6 anthranilate synthase component I and II compare
Atu2710 -1.9 -6.6 hypothetical protein compare
Atu0050 -1.7 -4.1 two component response regulator compare
Atu2800 -1.7 -2.6 precorrin-3B C17-methyltransferase compare
Atu1687 -1.7 -4.5 anthranilate phosphoribosyltransferase compare
Atu1686 -1.7 -8.2 peptidyl-prolyl cis-trans isomerse D compare
Atu2793 -1.7 -3.8 cobyrinic acid a,c-diamide synthase compare
Atu2802 -1.5 -7.0 precorrin-8X methylmutase compare
Atu2584 -1.5 -3.0 hypothetical protein compare
Atu1030 -1.5 -2.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0188 -1.5 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0346 -1.5 -4.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2592 -1.4 -3.3 hypothetical protein compare
Atu0184 -1.4 -2.1 glucokinase compare
Atu2807 -1.4 -4.9 cob(I)alamin adenosyltransferase compare
Atu1774 -1.4 -5.8 ABC transporter, substrate binding protein (peptide) compare
Atu2809 -1.3 -5.0 cobalamin biosynthesis protein compare
Atu0189 -1.3 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0598 -1.3 -5.2 phosphogluconate dehydratase compare
Atu1028 -1.3 -2.1 hypothetical protein compare
Atu1446 -1.3 -2.5 two component response regulator compare
Atu0972 -1.2 -5.4 lipA protein compare
Atu0190 -1.2 -5.5 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2113 -1.2 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu2728 -1.2 -4.1 beta (1-->2) glucan export ATP-binding protein compare
Atu0647 -1.2 -5.2 phosphoribosylamine--glycine ligase compare
Atu2801 -1.2 -2.3 precorrin-2 C20 methyltransferase compare
Atu2804 -1.2 -6.9 cobaltochelatase subunit compare
Atu2585 -1.2 -2.2 hypothetical protein compare
Atu1542 -1.2 -5.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1468 -1.2 -5.5 hypothetical protein compare
Atu2577 -1.2 -8.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu4149 -1.2 -5.2 UDP-glucose 6-dehydrogenase compare
Atu2583 -1.1 -5.8 glycosyltransferase compare
Atu0103 -1.1 -7.3 penicillin-binding protein compare
Atu0039 -1.1 -1.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu0025 -1.1 -1.9 hypothetical protein compare
Atu2582 -1.1 -3.4 UDP-glucose/GDP-mannose dehydrogenase compare
Atu2640 -1.1 -3.3 hypothetical protein compare
Atu2795 -1.1 -5.6 cobalamin biosynthetic protein compare
Atu2808 -1.1 -4.8 cobyric acid synthase compare
Atu2207 -1.1 -3.0 two component sensor kinase compare
Atu2796 -1.1 -4.0 precorrin-4 C11-methyltransferase compare
Atu1031 -1.1 -1.9 hypothetical protein compare
Atu0535 -1.1 -4.5 hypothetical protein compare
Atu2590 -1.1 -5.2 hypothetical protein compare
Atu0422 -1.0 -1.2 ABC transporter, membrane spanning protein compare
Atu4148 -1.0 -3.5 UDP-glucuronic acid epimerase compare
Atu3008 -1.0 -1.4 hypothetical protein compare
Atu2368 -1.0 -1.0 hypothetical protein compare
Atu2729 -1.0 -2.6 hypothetical protein compare
Atu0723 -1.0 -1.6 FAD dependent oxidoreductase compare
Atu2685 -1.0 -4.4 aconitate hydratase compare
Atu0185 -1.0 -3.9 methylglyoxal synthase compare
Atu2799 -1.0 -3.2 precorrin-6x reductase compare
Atu1588 -1.0 -5.5 homoserine dehydrogenase compare
Atu2464 -1.0 -1.8 formyltetrahydrofolate deformylase compare
Atu2805 -1.0 -3.5 cobalamin synthesis protein compare
Atu0331 -1.0 -1.4 sigma-54 modulation protein compare
Atu2798 -1.0 -3.5 precorrin-6y methyltransferase compare
Atu3754 -1.0 -5.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1620 -0.9 -4.9 triosephosphate isomerase compare
Atu3005 -0.9 -1.6 hypothetical protein compare
Atu1466 -0.9 -1.8 hypothetical protein compare
Atu3730 -0.9 -1.2 hypothetical protein compare
Atu3634 -0.9 -2.4 penicillin-binding protein dacf precursor compare
Atu1110 -0.9 -2.5 cytosol aminopeptidase compare
Atu0031 -0.9 -1.3 PTS system, IIA component compare
Atu1364 -0.9 -3.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4840 -0.9 -3.3 hypothetical protein compare
Atu0768 -0.8 -4.6 cytochrome-c oxidase chain I compare
Atu1359 -0.8 -0.9 dnaK deletion suppressor protein compare
Atu5142 -0.8 -1.1 hypothetical protein compare
Atu1801 -0.8 -2.2 hypothetical protein compare
Atu0142 -0.8 -2.6 cytochrome o ubiquinol oxidase subunit II compare
Atu1845 -0.8 -1.7 phosphoribosylformylglycinamidine synthase I compare
Atu0777 -0.8 -0.7 hypothetical protein compare
Atu2058 -0.8 -2.6 hypothetical protein compare
Atu0470 -0.8 -1.9 hypothetical protein compare
Atu4166 -0.8 -1.4 UDP-glucose 4-epimerase compare
Atu1354 -0.8 -0.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1344 -0.8 -1.6 hypothetical protein compare
Atu0401 -0.8 -2.4 fructokinase compare
Atu4144 -0.8 -1.1 hypothetical protein compare
Atu0566 -0.8 -1.6 hypothetical protein compare
Atu1679 -0.8 -1.1 peptidyl prolyl cis-trans isomerase compare
Atu3727 -0.8 -3.0 hypothetical protein compare
Atu2803 -0.8 -2.8 Cobalamin biosynthesis associated protein compare
Atu4866 -0.8 -3.3 hypothetical protein compare
Atu2504 -0.8 -2.8 transcriptional regulator, GntR family compare
Atu3429 -0.8 -1.3 hypothetical protein compare
Atu6036 -0.8 -0.7 entry-exclusion protein compare
Atu1075 -0.8 -3.0 amidophosphoribosyltransferase compare
Atu1163 -0.8 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3511 -0.8 -2.7 glutaredoxin compare
Atu1709 -0.8 -3.4 glycosyl hydrolase compare
Atu0043 -0.8 -1.5 imidazoleglycerol-phosphate dehydratase compare
Atu1589 -0.7 -3.0 aminotransferase, class I compare
Atu5451 -0.7 -0.7 hypothetical protein compare
Atu8180 -0.7 -3.0 hypothetical protein compare
Atu5160 -0.7 -1.9 transcriptional regulator protein compare
Atu2057 -0.7 -1.0 DNA helicase II compare
Atu2036 -0.7 -4.9 acetolactate synthase III, large subunit compare
Atu0295 -0.7 -1.2 hypothetical protein compare
Atu4214 -0.7 -2.5 cold shock protein compare
Atu4890 -0.7 -1.3 IS426 transposase compare
Atu1517 -0.7 -2.3 hypothetical protein compare
Atu3750 -0.7 -1.3 thiamine-phosphate pyrophosphorylase compare
Atu1759 -0.7 -4.0 L-serine dehydratase compare
Atu2591 -0.7 -3.2 glucosyltransferase compare
Atu1685 -0.7 -0.7 hypothetical protein compare
Atu0977 -0.7 -2.3 serine protease DO-like protease compare
Atu2200 -0.7 -2.1 cold shock protein compare
Atu8012 -0.7 -1.3 hypothetical protein compare
Atu8055 -0.7 -1.2 hypothetical protein compare
Atu6153 -0.7 -2.3 conserved hypothetical protein compare
Atu3468 -0.7 -0.8 hypothetical protein compare
Atu1373 -0.7 -4.4 hypothetical protein compare
Atu2832 -0.7 -1.6 tRNA modification GTPase compare
Atu1308 -0.7 -2.4 aspartate carbamoyl transferase catalytic subunit compare
Atu1844 -0.6 -1.4 Phosphoribosylformylglycinamidine synthetase compare
Atu1501 -0.6 -1.8 hypothetical protein compare
Atu8162 -0.6 -1.0 hypothetical protein compare
Atu3666 -0.6 -3.7 hypothetical protein compare
Atu4884 -0.6 -2.3 hypothetical protein compare
Atu8029 -0.6 -1.1 hypothetical protein compare
Atu3518 -0.6 -3.3 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu2747 -0.6 -4.1 hypothetical protein compare
Atu0894 -0.6 -1.6 ABC transporter, membrane spanning protein compare
Atu1056 -0.6 -2.8 hypothetical protein compare
Atu4108 -0.6 -3.3 ribonuclease D compare
Atu0941 -0.6 -0.6 hypothetical protein compare
Atu2733 -0.6 -2.2 hypothetical protein compare
Atu3001 -0.6 -2.0 hypothetical protein compare
Atu0471 -0.6 -2.0 hypothetical protein compare
Atu0030 -0.6 -0.9 phosphocarrier protein HPr compare
Atu4050 -0.6 -1.1 UTP-glucose-1-phosphate uridylyltransferase compare
Atu4527 -0.6 -1.2 hypothetical protein compare
Atu1810 -0.6 -0.7 hypothetical protein compare
Atu3018 -0.6 -2.8 hypothetical protein compare
Atu4894 -0.6 -3.3 transposase compare
Atu8184 -0.6 -2.3 hypothetical protein compare
Atu0361 -0.6 -1.3 transcriptional regulator compare
Atu1339 -0.6 -1.4 ribonuclease E compare
Atu0149 -0.6 -1.5 enoyl-(acyl-carrier-protein) reductase compare
Atu1307 -0.6 -1.7 dihydroorotase compare
Atu2127 -0.6 -3.0 L-carnitine dehydratase compare
Atu0486 -0.6 -2.3 dihydroorotate dehydrogenase compare
Atu1874 -0.6 -1.2 RecA protein compare
Atu0467 -0.6 -2.2 hypothetical protein compare
Atu1141 -0.6 -2.5 Phosphoribosylglycinamide synthetase compare
Atu4892 -0.6 -3.9 hypothetical protein compare
Atu4232 -0.6 -2.7 GntR family transcriptional regulator compare
Atu4711 -0.6 -2.0 two component sensor kinase compare
Atu2274 -0.6 -3.3 cation efflux system protein compare
Atu4882 -0.6 -1.0 hypothetical protein compare
Atu3315 -0.5 -2.5 UDP-glucose 4-epimerase compare
Atu1285 -0.5 -2.4 metal dependent hydrolase compare
Atu3022 -0.5 -3.2 sugar ABC transporter permease compare
Atu0369 -0.5 -1.8 hypothetical protein compare
Atu4317 -0.5 -0.8 TetR family transcriptional regulator compare
Atu2237 -0.5 -2.1 cytochrome c1 compare
Atu4880 -0.5 -3.2 AraC family transcriptional regulator compare
Atu1725 -0.5 -1.1 hypothetical protein compare
Atu3788 -0.5 -2.5 potassium-transporting ATPase subunit C compare
Atu1103 -0.5 -1.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu3017 -0.5 -1.0 phosphoglyceromutase compare
Atu0809 -0.5 -1.0 hypothetical protein compare
Atu5114 -0.5 -1.0 hypothetical protein compare
Atu3016 -0.5 -2.9 phosphoglyceromutase compare
Atu6107 -0.5 -2.1 hypothetical protein compare
Atu4502 -0.5 -2.0 cobalamin synthesis protein compare
Atu4897 -0.5 -1.1 hypothetical protein compare
Atu8202 -0.5 -2.0 hypothetical protein compare
Atu4825 -0.5 -2.4 dehydrogenase compare
Atu2766 -0.5 -4.2 NAD-glutamate dehydrogenase compare
Atu3012 -0.5 -1.2 hypothetical protein compare
Atu3780 -0.5 -2.0 hypothetical protein compare
Atu4418 -0.5 -1.7 glutaryl-CoA dehydrogenase compare
Atu4848 -0.5 -2.5 2-deoxyribose-5-phosphate aldolase compare
Atu4618 -0.5 -3.3 dTDP-rhamnose-3,5-epimerase compare
Atu4515 -0.5 -2.6 branched chain amino acid ABC transporter ATPase compare
Atu1578 -0.5 -2.3 ABC transporter, membrane spanning protein (amino acid) compare
Atu3045 -0.5 -2.1 hypothetical protein compare
Atu3963 -0.5 -2.7 GntR family transcriptional regulator compare
Atu4605 -0.5 -1.9 IS3 family transposase compare
Atu1722 -0.5 -1.5 hypothetical protein compare
Atu4346 -0.5 -1.6 hypothetical protein compare
Atu0845 -0.5 -1.9 hypothetical protein compare
Atu8163 -0.5 -2.5 hypothetical protein compare
Atu0029 -0.5 -1.5 S-adenosylhomocysteine hydrolase compare
Atu4075 -0.5 -2.3 glycogen synthase compare
Atu2580 -0.5 -3.5 adenylate cyclase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Phenazine methosulfate across organisms