Experiment set4IT072 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with Br60_phage 0.0000005 MOI

200 most important genes:

  gene name fitness t score description  
GFF4354 -6.7 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF384 -6.6 -5.2 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF388 -6.3 -14.0 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF4636 -6.1 -6.0 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF3712 -6.1 -4.2 Cyclic AMP receptor protein compare
GFF2430 -6.0 -2.3 Ferredoxin, 2Fe-2S compare
GFF4890 -5.9 -4.1 Transport ATP-binding protein CydC compare
GFF652 -5.9 -10.5 UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF2690 -5.8 -3.6 Peptide transport system permease protein SapC compare
GFF380 -5.6 -10.7 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-) compare
GFF4891 -5.4 -9.1 Transport ATP-binding protein CydD compare
GFF391 -5.4 -3.7 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF3667 -5.4 -3.4 Cytidylate kinase (EC 2.7.4.25) compare
GFF1634 -5.2 -3.6 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF3166 -5.1 -3.5 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF4647 -5.1 -9.2 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF4601 -5.0 -9.0 Phosphoglucomutase (EC 5.4.2.2) compare
GFF4637 -4.8 -13.7 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF2431 -4.8 -4.6 Chaperone protein HscA compare
GFF4635 -4.8 -4.0 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF87 -4.8 -3.1 C4-type zinc finger protein, DksA/TraR family compare
GFF4646 -4.8 -12.6 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF20 -4.7 -7.8 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF2475 -4.6 -3.3 Ribonuclease III (EC 3.1.26.3) compare
GFF4639 -4.6 -3.1 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF1890 -4.5 -16.1 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF2389 -4.4 -3.0 Trk system potassium uptake protein TrkA compare
GFF1879 -4.3 -15.2 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF1880 -4.3 -14.2 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF1883 -4.2 -10.2 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF355 -4.1 -4.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
GFF1882 -4.1 -8.1 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF1887 -4.1 -11.0 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF390 -4.1 -2.8 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
GFF4596 -4.0 -5.3 Ferric uptake regulation protein FUR compare
GFF1881 -4.0 -12.0 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF824 -4.0 -5.4 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1885 -3.9 -12.4 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF4638 -3.9 -7.7 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) compare
GFF381 -3.9 -8.4 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF2216 -3.9 -10.8 DNA polymerase I (EC 2.7.7.7) compare
GFF1886 -3.8 -13.1 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF1889 -3.8 -15.7 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF2149 -3.6 -8.0 Malate dehydrogenase (EC 1.1.1.37) compare
GFF1750 -3.6 -4.9 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF2433 -3.6 -8.0 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF4353 -3.6 -3.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF2991 -3.6 -2.4 Tyrosine recombinase XerD compare
GFF392 -3.6 -2.4 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF4355 -3.3 -2.4 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF267 -3.3 -8.6 Transcriptional activator RfaH compare
GFF2173 -3.3 -6.3 Chromosomal replication initiator protein DnaA compare
GFF1888 -3.2 -4.6 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
GFF1891 -3.0 -3.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF2946 -3.0 -4.9 RNA polymerase sigma-54 factor RpoN compare
GFF4600 -2.9 -5.3 SeqA protein, negative modulator of initiation of replication compare
GFF2948 -2.9 -4.5 PTS system nitrogen-specific IIA component, PtsN compare
GFF4027 -2.9 -3.0 Flagellar biosynthesis protein FliS compare
GFF230 -2.9 -8.6 Adenylate cyclase (EC 4.6.1.1) compare
GFF4634 -2.8 -8.9 Citrate synthase (si) (EC 2.3.3.1) compare
GFF2881 -2.8 -10.0 WzxE protein compare
GFF3377 -2.7 -8.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
GFF121 -2.7 -5.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF1256 -2.6 -3.8 Chromosome (plasmid) partitioning protein ParA compare
GFF1716 -2.6 -6.9 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF1884 -2.6 -2.4 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF2434 -2.6 -1.6 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF2692 -2.6 -6.8 Peptide transport system ATP-binding protein SapF compare
GFF1303 -2.5 -2.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF2348 -2.5 -6.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
GFF603 -2.5 -3.7 NfuA Fe-S protein maturation compare
GFF387 -2.5 -4.8 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF3149 -2.5 -12.2 Type I secretion outer membrane protein, TolC precursor compare
GFF1953 -2.4 -5.4 Phosphohistidine phosphatase SixA compare
GFF4652 -2.4 -4.8 Tol biopolymer transport system, TolR protein compare
GFF4642 -2.4 -1.6 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
GFF1934 -2.3 -5.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF2047 -2.3 -10.8 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF122 -2.3 -9.7 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF2784 -2.2 -4.3 GTP-binding and nucleic acid-binding protein YchF compare
GFF4641 -2.2 -3.4 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
GFF2994 -2.2 -2.2 YgfY COG2938 compare
GFF242 -2.2 -5.3 Magnesium and cobalt transport protein CorA compare
GFF4653 -2.2 -4.0 TolA protein compare
GFF2808 -2.2 -9.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF115 -2.1 -6.2 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF632 -2.1 -6.4 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) compare
GFF4343 -2.1 -6.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
GFF635 -2.1 -4.9 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF4654 -2.1 -7.0 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF389 -2.0 -4.7 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF1312 -2.0 -4.3 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF276 -2.0 -5.9 Potassium uptake protein TrkH compare
GFF192 -2.0 -10.0 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF1921 -2.0 -2.7 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF883 -1.9 -12.3 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
GFF4342 -1.9 -6.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF2477 -1.9 -7.9 Translation elongation factor LepA compare
GFF55 -1.9 -7.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF1032 -1.8 -1.6 DNA polymerase III psi subunit (EC 2.7.7.7) compare
GFF2773 -1.8 -6.5 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF1808 -1.8 -5.6 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF2943 -1.7 -1.9 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
GFF4344 -1.7 -4.4 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
GFF629 -1.7 -2.1 Shikimate kinase I (EC 2.7.1.71) compare
GFF4182 -1.7 -6.7 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF1076 -1.7 -2.5 Aerobic respiration control protein arcA compare
GFF3502 -1.7 -1.5 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF4345 -1.7 -8.9 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF4346 -1.7 -9.6 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF4288 -1.7 -7.5 AroM protein compare
GFF158 -1.6 -8.9 Fructose repressor FruR, LacI family compare
GFF1300 -1.6 -8.6 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
GFF269 -1.6 -4.3 NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3) compare
GFF4655 -1.6 -3.6 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF630 -1.6 -6.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF2882 -1.6 -7.4 Lipopolysaccharide biosynthesis protein RffA compare
GFF587 -1.6 -7.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF1090 -1.6 -4.8 Chaperone protein DnaJ compare
GFF3133 -1.5 -7.2 Putative cell division protein precursor compare
GFF2816 -1.5 -3.1 Septum site-determining protein MinC compare
GFF2689 -1.4 -2.3 Peptide transport system permease protein SapB compare
GFF2880 -1.4 -7.3 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF4026 -1.4 -2.7 Flagellar biosynthesis protein FliT compare
GFF633 -1.4 -4.2 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF3772 -1.4 -2.0 1-phosphofructokinase (EC 2.7.1.56) compare
GFF2104 -1.4 -2.2 ATP-dependent RNA helicase SrmB compare
GFF265 -1.4 -6.1 Twin-arginine translocation protein TatC compare
GFF4473 -1.4 -1.3 FIG01046818: hypothetical protein compare
GFF2623 -1.4 -1.5 Putative inner membrane protein compare
GFF522 -1.3 -5.5 Low-affinity inorganic phosphate transporter compare
GFF3480 -1.3 -4.9 Uncharacterized protein YeaC compare
GFF3548 -1.3 -3.5 3-dehydroquinate dehydratase I (EC 4.2.1.10) compare
GFF3506 -1.3 -1.7 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF3528 -1.2 -3.3 Integration host factor alpha subunit compare
GFF401 -1.2 -5.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
GFF4317 -1.2 -3.0 Ribonucleotide reductase transcriptional regulator NrdR compare
GFF2409 -1.2 -5.1 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF991 -1.2 -0.6 hypothetical protein compare
GFF2972 -1.2 -9.7 ATPase, AFG1 family compare
GFF1056 -1.2 -5.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF2397 -1.2 -5.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF1646 -1.1 -3.6 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) compare
GFF4338 -1.1 -5.4 Putative transport protein compare
GFF379 -1.1 -3.9 Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-) compare
GFF1815 -1.1 -2.5 Electron transport complex protein RnfA compare
GFF2737 -1.1 -1.6 YciL protein compare
GFF2313 -1.1 -6.1 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF2688 -1.1 -4.9 Peptide transport periplasmic protein SapA compare
GFF661 -1.1 -6.2 6-phosphogluconolactonase (EC 3.1.1.31) compare
GFF2148 -1.1 -2.1 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF3685 -1.0 -5.4 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF2415 -1.0 -3.6 Nucleoside diphosphate kinase (EC 2.7.4.6) compare
GFF982 -1.0 -6.1 Putative cytoplasmic protein USSDB7A compare
GFF4162 -1.0 -3.6 DNA repair protein RecN compare
GFF2051 -1.0 -5.5 Predicted transcriptional regulator of pyridoxine metabolism compare
GFF357 -1.0 -2.0 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF3747 -1.0 -5.6 FIG001881: hydrolase of alkaline phosphatase superfamily compare
GFF3324 -1.0 -1.2 putative periplasmic protein compare
GFF2061 -1.0 -5.0 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
GFF1930 -1.0 -2.1 DedD protein compare
GFF3644 -1.0 -2.0 Electron transport complex protein RnfD compare
GFF4586 -1.0 -2.2 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) compare
GFF3342 -0.9 -5.3 Dihydroorotase (EC 3.5.2.3) compare
GFF4766 -0.9 -1.1 Invasion protein invH precursor compare
GFF89 -0.9 -2.6 Poly(A) polymerase (EC 2.7.7.19) compare
GFF4061 -0.9 -0.9 putative periplasmic protein compare
GFF2249 -0.9 -1.5 Putative merR family bacterial regulatory protein compare
GFF4740 -0.9 -5.1 MxiG protein; Pathogenicity 1 island effector protein compare
GFF941 -0.9 -3.6 Ribonuclease E inhibitor RraB compare
GFF3938 -0.9 -2.7 Ethanolamine utilization protein similar to PduL compare
GFF4584 -0.9 -3.3 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family compare
GFF713 -0.9 -1.0 FIG01047037: hypothetical protein compare
GFF188 -0.9 -3.3 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF2222 -0.9 -3.6 Glutamine synthetase type I (EC 6.3.1.2) compare
GFF1499 -0.9 -1.5 Ribosome-binding factor A compare
GFF3618 -0.8 -4.7 Purine nucleotide synthesis repressor compare
GFF190 -0.8 -3.1 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF2621 -0.8 -1.8 FIG01045328: hypothetical protein compare
GFF443 -0.8 -1.3 FIG01045230: hypothetical protein compare
GFF3669 -0.8 -1.5 Integration host factor beta subunit compare
GFF3632 -0.8 -1.3 Transcriptional regulator SlyA compare
GFF236 -0.8 -0.7 FIG00545237: hypothetical protein compare
GFF2634 -0.8 -2.6 Gfa-like protein compare
GFF3057 -0.8 -2.2 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
GFF880 -0.8 -4.6 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
GFF2922 -0.8 -2.0 Transcription elongation factor GreA compare
GFF2934 -0.8 -2.3 YrbA protein compare
GFF2392 -0.8 -1.5 Peptide deformylase (EC 3.5.1.88) compare
GFF3890 -0.8 -2.1 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF2044 -0.8 -4.5 Cysteine synthase (EC 2.5.1.47) compare
GFF3030 -0.8 -3.5 Agmatinase (EC 3.5.3.11) compare
GFF4892 -0.8 -2.1 Thioredoxin reductase (EC 1.8.1.9) compare
GFF157 -0.8 -1.5 Cell division protein MraZ compare
GFF992 -0.8 -1.7 hypothetical protein compare
GFF2314 -0.8 -3.0 ATP-dependent protease HslV (EC 3.4.25.-) compare
GFF249 -0.8 -1.0 L-lysine permease compare
GFF4720 -0.8 -2.0 [NiFe] hydrogenase nickel incorporation protein HypA compare
GFF3536 -0.8 -4.1 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
GFF3148 -0.7 -3.9 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare


Specific Phenotypes

For 1 genes in this experiment

For phage Br60_phage in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

For phage Br60_phage across organisms