Experiment set4IT071 for Pseudomonas simiae WCS417

Compare to:

LB with Paraquat dichloride 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_26335 -5.5 -3.8 BetI family transcriptional regulator compare
PS417_27800 -4.5 -10.4 exodeoxyribonuclease III compare
PS417_24155 -3.2 -3.8 ATP-binding protein compare
PS417_26340 -3.2 -9.4 betaine-aldehyde dehydrogenase conserved
PS417_02555 -3.1 -17.7 exoribonuclease R compare
PS417_27245 -2.9 -6.1 aminotransferase DegT compare
PS417_23770 -2.9 -2.7 exodeoxyribonuclease V subunit alpha compare
PS417_27865 -2.6 -2.8 LysR family transcriptional regulator compare
PS417_23950 -2.6 -2.9 polynucleotide phosphorylase/polyadenylase compare
PS417_04365 -2.5 -2.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02270 -2.5 -5.1 carbamoyltransferase compare
PS417_27795 -2.4 -1.9 orotate phosphoribosyltransferase compare
PS417_02280 -2.4 -3.1 GlcNAc-PI de-N-acetylase compare
PS417_26345 -2.2 -4.5 choline dehydrogenase conserved
PS417_27870 -2.1 -6.0 ATP-dependent DNA helicase RecG compare
PS417_05975 -2.0 -2.3 chemotaxis protein CheW compare
PS417_08170 -1.9 -9.7 capsular biosynthesis protein compare
PS417_26990 -1.9 -1.8 RNA pyrophosphohydrolase compare
PS417_02485 -1.9 -5.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24835 -1.8 -6.3 hypothetical protein compare
PS417_08410 -1.8 -2.5 hypothetical protein compare
PS417_07470 -1.7 -1.9 hypothetical protein compare
PS417_08135 -1.7 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01915 -1.6 -1.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_08545 -1.6 -2.8 aromatic ring-opening dioxygenase LigB compare
PS417_00075 -1.5 -4.7 hypothetical protein compare
PS417_05850 -1.5 -3.5 LysR family transcriptional regulator compare
PS417_06375 -1.5 -1.2 deoxycytidine triphosphate deaminase compare
PS417_08540 -1.5 -3.8 RNA helicase compare
PS417_08365 -1.4 -1.3 hypothetical protein compare
PS417_27740 -1.4 -7.8 MFS transporter conserved
PS417_19675 -1.4 -4.5 chemotaxis protein CheY compare
PS417_27605 -1.4 -5.6 hypothetical protein compare
PS417_08125 -1.3 -1.4 prephenate dehydratase compare
PS417_05165 -1.3 -2.5 cytosol aminopeptidase compare
PS417_18355 -1.3 -5.4 DNA-binding protein compare
PS417_02210 -1.3 -6.7 diguanylate cyclase compare
PS417_23775 -1.3 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_23580 -1.2 -2.0 peptidylprolyl isomerase compare
PS417_06370 -1.2 -1.1 cold-shock protein compare
PS417_21125 -1.2 -5.8 phosphoadenosine phosphosulfate reductase compare
PS417_03000 -1.2 -5.4 translation initiation factor Sui1 compare
PS417_22450 -1.2 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_06680 -1.2 -7.9 nuclease PIN compare
PS417_27300 -1.1 -1.0 cell division protein ZapA compare
PS417_00345 -1.1 -3.5 copper-binding protein compare
PS417_14070 -1.1 -0.9 hypothetical protein compare
PS417_06205 -1.1 -6.3 methionine aminopeptidase compare
PS417_07870 -1.1 -2.2 hypothetical protein compare
PS417_20635 -1.1 -1.0 ABC transporter ATP-binding protein compare
PS417_05985 -1.0 -2.2 chemotaxis protein CheY compare
PS417_27610 -1.0 -4.0 hypothetical protein compare
PS417_20785 -1.0 -5.9 transcriptional regulator compare
PS417_05815 -1.0 -3.0 recombinase RecA compare
PS417_04650 -1.0 -1.7 D-alanine--D-alanine ligase compare
PS417_00180 -1.0 -2.9 tryptophan synthase subunit alpha compare
PS417_00660 -1.0 -3.2 DSBA oxidoreductase compare
PS417_00080 -1.0 -6.0 potassium transporter peripheral membrane component compare
PS417_04875 -1.0 -1.5 molybdenum cofactor biosynthesis protein MoaE compare
PS417_28515 -1.0 -3.8 16S rRNA methyltransferase compare
PS417_23995 -1.0 -1.1 preprotein translocase subunit SecG compare
PS417_01095 -1.0 -1.8 amino acid ABC transporter ATP-binding protein compare
PS417_04865 -1.0 -2.2 molybdenum cofactor biosynthesis protein MoaC compare
PS417_15085 -1.0 -3.5 ATPase AAA compare
PS417_26370 -1.0 -4.4 RNA helicase compare
PS417_14085 -0.9 -3.4 hypothetical protein compare
PS417_10040 -0.9 -1.3 MFS transporter compare
PS417_05865 -0.9 -1.9 hypothetical protein compare
PS417_02895 -0.9 -2.2 precorrin-6Y C5,15-methyltransferase compare
PS417_14940 -0.9 -1.9 LysR family transcriptional regulator compare
PS417_26805 -0.9 -1.1 cell division protein FtsE compare
PS417_12660 -0.8 -1.8 hypothetical protein compare
PS417_14805 -0.8 -2.0 AraC family transcriptional regulator compare
PS417_06825 -0.8 -1.7 hypothetical protein compare
PS417_06735 -0.8 -1.4 3-oxoadipate enol-lactonase compare
PS417_27425 -0.8 -4.2 exopolyphosphatase compare
PS417_04170 -0.8 -4.5 stringent starvation protein A compare
PS417_23095 -0.8 -1.1 exodeoxyribonuclease compare
PS417_16490 -0.8 -2.0 cell division protein FtsK compare
PS417_16750 -0.8 -2.4 ABC transporter ATP-binding protein compare
PS417_01340 -0.8 -4.5 agmatine deiminase compare
PS417_02975 -0.8 -2.6 3-dehydroquinate dehydratase compare
PS417_03385 -0.8 -1.4 flavin reductase compare
PS417_18490 -0.8 -1.9 hypothetical protein compare
PS417_27835 -0.8 -2.8 endoribonuclease compare
PS417_12855 -0.8 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12280 -0.8 -1.5 MerR family transcriptional regulator compare
PS417_17110 -0.8 -3.3 spore coat protein compare
PS417_21395 -0.8 -4.2 radical SAM protein compare
PS417_02690 -0.8 -3.2 N-acylglucosamine 2-epimerase compare
PS417_22190 -0.7 -4.8 diguanylate cyclase compare
PS417_08160 -0.7 -1.8 hypothetical protein compare
PS417_02630 -0.7 -1.5 NAD synthetase compare
PS417_02495 -0.7 -3.3 GTPase HflX compare
PS417_02720 -0.7 -1.0 TetR family transcriptional regulator compare
PS417_15875 -0.7 -1.5 LuxR family transcriptional regulator compare
PS417_07945 -0.7 -2.3 hypothetical protein compare
PS417_23215 -0.7 -2.3 RNA methyltransferase compare
PS417_21680 -0.7 -1.6 succinylglutamate desuccinylase compare
PS417_05160 -0.7 -1.1 DNA polymerase III subunit chi compare
PS417_11090 -0.7 -2.8 LacI family transcriptional regulator compare
PS417_15540 -0.7 -1.3 NUDIX hydrolase compare
PS417_08665 -0.7 -2.4 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_14120 -0.7 -4.2 molybdenum ABC transporter permease compare
PS417_23135 -0.7 -1.7 GTP-binding protein compare
PS417_27075 -0.7 -3.0 thiol-disulfide isomerase compare
PS417_07620 -0.7 -1.0 beta-hexosaminidase compare
PS417_22175 -0.7 -1.4 amino acid transporter LysE compare
PS417_23915 -0.7 -3.2 pantoate--beta-alanine ligase compare
PS417_00650 -0.7 -0.8 LysR family transcriptional regulator compare
PS417_14540 -0.7 -1.1 cytochrome C oxidase subunit III compare
PS417_06895 -0.7 -2.6 DNA-binding protein compare
PS417_22445 -0.7 -2.4 ATP-dependent DNA helicase RuvB compare
PS417_15780 -0.7 -2.3 membrane protein compare
PS417_10305 -0.7 -1.5 hypothetical protein compare
PS417_26850 -0.7 -0.6 twin-arginine translocation pathway signal protein compare
PS417_10445 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_00550 -0.7 -0.9 hypothetical protein compare
PS417_26835 -0.7 -2.4 3-mercaptopyruvate sulfurtransferase compare
PS417_07565 -0.6 -1.5 hypothetical protein compare
PS417_26520 -0.6 -3.0 amino acid ABC transporter substrate-binding protein compare
PS417_10025 -0.6 -1.3 bacteriophage lambda NinG family protein compare
PS417_27665 -0.6 -3.2 diguanylate cyclase compare
PS417_09325 -0.6 -2.8 peptidase S41 compare
PS417_08680 -0.6 -1.1 flagellar biosynthesis protein FlhB compare
PS417_14115 -0.6 -3.8 molybdate ABC transporter substrate-binding protein compare
PS417_20700 -0.6 -4.6 cbb3-type cytochrome c oxidase subunit I compare
PS417_04180 -0.6 -2.2 GntR family transcriptional regulator compare
PS417_12160 -0.6 -2.0 Fis family transcriptional regulator compare
PS417_12460 -0.6 -3.3 hypothetical protein compare
PS417_03930 -0.6 -3.6 thymidine phosphorylase compare
PS417_24705 -0.6 -1.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_11585 -0.6 -1.9 LuxR family transcriptional regulator compare
PS417_27510 -0.6 -2.6 disulfide bond formation protein B compare
PS417_03145 -0.6 -1.3 acetyl-CoA acetyltransferase compare
PS417_17735 -0.6 -1.4 LacI family transcriptional regulator compare
PS417_10425 -0.6 -1.3 hypothetical protein compare
PS417_06175 -0.6 -2.6 cysteine sulfinate desulfinase compare
PS417_22085 -0.6 -1.4 aldehyde dehydrogenase compare
PS417_06540 -0.6 -1.1 membrane protein compare
PS417_17490 -0.6 -1.4 ABC transporter ATP-binding protein compare
PS417_19605 -0.6 -0.9 hypothetical protein compare
PS417_00045 -0.6 -1.5 glycerol acyltransferase compare
PS417_01265 -0.6 -3.8 CbbBc protein compare
PS417_04705 -0.6 -1.7 hypothetical protein compare
PS417_24905 -0.6 -2.9 DNA-binding protein compare
PS417_02415 -0.6 -2.5 phosphoserine phosphatase compare
PS417_22205 -0.6 -3.7 potassium transporter TrkH compare
PS417_03685 -0.6 -0.9 FAD-dependent oxidoreductase compare
PS417_07950 -0.6 -2.4 MFS transporter compare
PS417_05095 -0.6 -1.9 membrane protein compare
PS417_22795 -0.6 -1.6 exclusion suppressor FxsA compare
PS417_26470 -0.6 -1.4 cytochrome C compare
PS417_06835 -0.6 -1.3 phospholipase compare
PS417_07560 -0.6 -1.0 universal stress protein UspA compare
PS417_17930 -0.6 -1.7 aldehyde dehydrogenase compare
PS417_14245 -0.6 -1.3 hypothetical protein compare
PS417_05100 -0.6 -1.3 RNA polymerase sigma factor compare
PS417_09435 -0.6 -1.8 glyoxalase compare
PS417_06200 -0.6 -3.1 protein-PII uridylyltransferase compare
PS417_14295 -0.6 -1.8 AraC family transcriptional regulator compare
PS417_23360 -0.6 -0.7 hypothetical protein compare
PS417_20610 -0.6 -1.0 hypothetical protein compare
PS417_18630 -0.5 -1.7 tRNA-dihydrouridine synthase C compare
PS417_17830 -0.5 -1.3 4-hydroxyphenylacetate isomerase compare
PS417_03940 -0.5 -2.2 membrane protein compare
PS417_20310 -0.5 -1.9 hypothetical protein compare
PS417_08670 -0.5 -2.1 molybdopterin biosynthesis protein B compare
PS417_20585 -0.5 -2.5 chemotaxis protein compare
PS417_09580 -0.5 -1.8 tyrosyl-trna synthetase compare
PS417_23210 -0.5 -1.3 serine acetyltransferase compare
PS417_02880 -0.5 -1.7 copper chaperone compare
PS417_25645 -0.5 -2.8 peptidase M23 compare
PS417_16885 -0.5 -1.7 hypothetical protein compare
PS417_04760 -0.5 -1.2 hypothetical protein compare
PS417_08675 -0.5 -2.1 molybdenum cofactor biosynthesis protein MoaA compare
PS417_04585 -0.5 -0.9 hypothetical protein compare
PS417_16680 -0.5 -0.8 MFS transporter compare
PS417_27360 -0.5 -2.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_07840 -0.5 -1.7 hypothetical protein compare
PS417_08590 -0.5 -1.2 hypothetical protein compare
PS417_01715 -0.5 -0.9 hypothetical protein compare
PS417_10870 -0.5 -1.4 GABA permease compare
PS417_21015 -0.5 -1.2 EstX protein compare
PS417_20715 -0.5 -1.7 cytochrome Cbb3 compare
PS417_22680 -0.5 -1.9 chemotaxis protein CheY compare
PS417_06465 -0.5 -1.5 transcriptional regulator compare
PS417_07695 -0.5 -2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_22170 -0.5 -1.5 acetyltransferase compare
PS417_09220 -0.5 -0.9 cupin compare
PS417_11715 -0.5 -1.4 chromophore maturation protein PvdO compare
PS417_14240 -0.5 -1.6 isochorismatase compare
PS417_25315 -0.5 -2.9 membrane protein compare
PS417_24630 -0.5 -3.4 ATP-binding protein compare
PS417_24460 -0.5 -1.5 hypothetical protein compare
PS417_25730 -0.5 -1.9 phosphoglycolate phosphatase compare
PS417_10370 -0.5 -2.0 ATPase compare
PS417_25145 -0.5 -1.7 hypothetical protein compare
PS417_02560 -0.5 -1.2 23S rRNA methyltransferase compare
PS417_12515 -0.5 -0.9 lactate dehydrogenase compare


Specific Phenotypes

For 6 genes in this experiment

For stress Paraquat dichloride in Pseudomonas simiae WCS417

For stress Paraquat dichloride across organisms