Experiment set4IT070 for Agrobacterium fabrum C58

R2A with Ceftazidime hydrate 4 mM

Group: stress
Media: R2A + Ceftazidime hydrate (4 mM)
Culturing: Agro_ML11, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 28 (C), shaken=700 rpm
By: Hans Carlson and Mitchell Thompson on 22-Jun-21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 1 B10

Specific Phenotypes

For 19 genes in this experiment

For stress Ceftazidime hydrate in Agrobacterium fabrum C58

For stress Ceftazidime hydrate across organisms

SEED Subsystems

Subsystem	#Specific
Bacterial Cell Division	1
Bacterial Cytoskeleton	1
Bacterial RNA-metabolizing Zn-dependent hydrolases	1
Copper homeostasis: copper tolerance	1
Multidrug Resistance Efflux Pumps	1
Phosphate metabolism	1
Transport of Manganese	1
cAMP signaling in bacteria	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycosphingolipid biosynthesis - ganglio series
• Fatty acid biosynthesis
• Lysine degradation
• Histidine metabolism
• Tyrosine metabolism
• Phenylalanine metabolism
• Other glycan degradation
• Nucleotide sugars metabolism
• Aminosugars metabolism
• Glycosaminoglycan degradation
• Lipopolysaccharide biosynthesis
• Glycerophospholipid metabolism
• Ether lipid metabolism
• Glycosphingolipid biosynthesis - globo series
• 1- and 2-Methylnaphthalene degradation
• Benzoate degradation via CoA ligation
• Ethylbenzene degradation
• Butanoate metabolism
• Limonene and pinene degradation
• Diterpenoid biosynthesis
• Carotenoid biosynthesis - General
• Anthocyanin biosynthesis
• Alkaloid biosynthesis I
• Alkaloid biosynthesis II
• Biosynthesis of unsaturated fatty acids
• Biosynthesis of type II polyketide backbone
• Biosynthesis of terpenoids and steroids

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
chitin degradation II (Vibrio)	6	2	2
tRNA processing	10	10	2
chitin degradation III (Serratia)	7	2	1
peptidoglycan recycling II	10	2	1
peptidoglycan recycling I	14	8	1