Experiment set4IT068 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine_broth_2216 with Sodium nitrite 20 mM

200 most detrimental genes:

  gene name fitness t score description  
CA264_10920 +4.0 31.3 helix-turn-helix-type transcriptional regulator compare
CA264_19005 +3.9 27.1 SusC/RagA family TonB-linked outer membrane protein compare
CA264_06355 +3.7 27.4 ergothioneine biosynthesis protein EgtB compare
CA264_07245 +3.4 20.4 hypothetical protein compare
CA264_19545 +3.3 17.2 oxidoreductase compare
CA264_19540 +3.3 26.1 hypothetical protein compare
CA264_02025 +3.3 19.6 nitroreductase compare
CA264_13015 +2.5 20.0 sensor histidine kinase compare
CA264_18135 +2.3 13.7 ABC transporter ATP-binding protein compare
CA264_02685 +2.3 9.9 hypothetical protein compare
CA264_19150 +2.1 16.2 TonB dependent receptor compare
CA264_19555 +2.1 8.2 GNAT family N-acetyltransferase compare
CA264_01385 +2.1 13.4 iron ABC transporter substrate-binding protein compare
CA264_01065 +2.0 7.3 MarR family transcriptional regulator compare
CA264_01390 +1.8 11.9 iron ABC transporter permease compare
CA264_02030 +1.8 4.9 hypothetical protein compare
CA264_09365 +1.6 11.1 4-hydroxybutyrate CoA-transferase compare
CA264_14345 +1.6 9.9 hypothetical protein compare
CA264_17885 +1.6 4.4 GAF domain-containing protein compare
CA264_06475 +1.6 1.1 hypothetical protein compare
CA264_03395 +1.5 8.8 phospholipase compare
CA264_14815 +1.3 2.3 transcriptional regulator compare
CA264_14550 +1.3 11.3 cell surface protein SprA compare
CA264_17565 +1.2 1.6 hypothetical protein compare
CA264_09090 +1.2 7.2 NADPH dehydrogenase NamA compare
CA264_08075 +1.2 3.5 gliding motility-associated ABC transporter permease subunit GldF compare
CA264_15115 +1.1 1.2 hypothetical protein compare
CA264_20010 +1.1 2.0 gliding motility lipoprotein GldH compare
CA264_14635 +1.1 6.8 hypothetical protein compare
CA264_10365 +1.1 1.1 hypothetical protein compare
CA264_05005 +1.1 9.5 colicin receptor compare
CA264_00455 +1.1 4.9 PorT-like protein compare
CA264_19010 +1.1 7.5 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_19215 +1.1 5.6 RNA polymerase subunit sigma compare
CA264_20950 +1.1 2.9 hypothetical protein compare
CA264_06095 +1.1 2.5 hypothetical protein compare
CA264_16370 +1.1 5.3 gliding motility lipoprotein GldK compare
CA264_17485 +1.0 1.7 cytochrome C biosynthesis protein compare
CA264_17190 +1.0 1.1 methionine-R-sulfoxide reductase compare
CA264_15230 +1.0 5.6 hypothetical protein compare
CA264_14440 +1.0 6.0 glutamine cyclotransferase compare
CA264_16410 +1.0 7.0 hypothetical protein compare
CA264_14350 +1.0 5.8 hemolysin compare
CA264_02690 +1.0 4.7 rhodanese compare
CA264_13560 +0.9 2.6 membrane protein insertion efficiency factor YidD compare
CA264_15215 +0.9 3.7 hypothetical protein compare
CA264_00250 +0.9 6.1 hypothetical protein compare
CA264_09700 +0.9 1.2 hypothetical protein compare
CA264_09085 +0.9 6.8 sugar hydrolase compare
CA264_09740 +0.9 1.6 hypothetical protein compare
CA264_16340 +0.9 6.3 hypothetical protein compare
CA264_14805 +0.9 1.9 DNA-binding protein compare
CA264_20845 +0.8 1.1 hypothetical protein compare
CA264_10525 +0.8 1.8 molybdenum cofactor biosynthesis protein MoaE compare
CA264_01155 +0.8 3.1 Zn-dependent protease compare
CA264_15175 +0.8 0.4 biopolymer transporter ExbD compare
CA264_21335 +0.8 1.7 hypothetical protein compare
CA264_15205 +0.8 4.0 RNA pseudouridine synthase compare
CA264_21065 +0.8 2.4 transcriptional regulator compare
CA264_16365 +0.8 0.9 gliding motility protein GldL compare
CA264_17800 +0.8 1.3 tRNA-Val compare
CA264_17735 +0.8 6.3 antibiotic ABC transporter ATP-binding protein compare
CA264_12890 +0.8 2.1 iron-binding protein compare
CA264_07775 +0.8 1.6 transcriptional regulator compare
CA264_07030 +0.8 5.0 UDP-glucose 4-epimerase compare
CA264_05535 +0.8 5.6 hypothetical protein compare
CA264_09245 +0.8 2.3 hypothetical protein compare
CA264_08105 +0.8 2.6 NupC/NupG family nucleoside CNT transporter compare
CA264_10870 +0.8 1.9 division/cell wall cluster transcriptional repressor MraZ compare
CA264_19885 +0.8 3.3 uridine kinase compare
CA264_01425 +0.8 6.4 RelA/SpoT family protein compare
CA264_08945 +0.7 4.0 type 1 glutamine amidotransferase domain-containing protein compare
CA264_14970 +0.7 2.0 gliding motility lipoprotein GldB compare
CA264_19125 +0.7 2.0 hypothetical protein compare
CA264_13650 +0.7 2.1 hypothetical protein compare
CA264_20715 +0.7 2.9 metallophosphatase compare
CA264_09665 +0.7 1.8 hypothetical protein compare
CA264_01815 +0.7 1.0 N-acetyltransferase compare
CA264_13070 +0.7 4.8 ribonuclease bn compare
CA264_06195 +0.7 1.8 YqaE/Pmp3 family membrane protein compare
CA264_13870 +0.7 2.3 hypothetical protein compare
CA264_21225 +0.7 0.9 hypothetical protein compare
CA264_07695 +0.7 2.9 thioesterase compare
CA264_18655 +0.6 2.5 transcriptional repressor compare
CA264_00015 +0.6 2.8 hypothetical protein compare
CA264_01265 +0.6 1.2 50S ribosomal protein L9 compare
CA264_12940 +0.6 3.2 alcohol dehydrogenase compare
CA264_02415 +0.6 2.2 dethiobiotin synthase compare
CA264_19675 +0.6 2.4 RNA pseudouridine synthase compare
CA264_15865 +0.6 2.2 helicase compare
CA264_13315 +0.6 4.0 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA compare
CA264_17750 +0.5 2.2 hypothetical protein compare
CA264_10535 +0.5 1.6 cyclic pyranopterin monophosphate synthase MoaC compare
CA264_17030 +0.5 4.3 hypothetical protein compare
CA264_20465 +0.5 0.8 aspartate carbamoyltransferase compare
CA264_09155 +0.5 2.8 anion permease compare
CA264_04550 +0.5 0.7 nucleoid-associated protein, YbaB/EbfC family compare
CA264_21555 +0.5 2.8 phosphoribosylpyrophosphate synthetase compare
CA264_15010 +0.5 0.8 gliding motility lipoprotein GldD compare
CA264_20635 +0.5 0.8 thioredoxin family protein compare
CA264_14355 +0.5 2.1 hypothetical protein compare
CA264_12150 +0.5 1.6 hypothetical protein compare
CA264_03330 +0.5 1.3 peptide-methionine (R)-S-oxide reductase compare
CA264_16360 +0.5 1.1 gliding motility protein GldM compare
CA264_00660 +0.5 3.7 hypothetical protein compare
CA264_07750 +0.5 0.4 elongation factor P compare
CA264_21640 +0.5 2.2 DDE transposase compare
CA264_18055 +0.5 3.5 hypothetical protein compare
CA264_17320 +0.5 4.2 hypothetical protein compare
CA264_03585 +0.5 1.6 hypothetical protein compare
CA264_20440 +0.5 0.7 thiamine biosynthesis protein ThiS compare
CA264_03025 +0.5 3.8 T9SS C-terminal target domain-containing protein compare
CA264_13480 +0.5 1.0 hypothetical protein compare
CA264_02795 +0.5 2.7 hypothetical protein compare
CA264_10095 +0.5 2.2 4Fe-4S ferredoxin compare
CA264_15600 +0.5 2.5 tRNA glutamyl-Q synthetase compare
CA264_21435 +0.5 0.7 hypothetical protein compare
CA264_19685 +0.5 0.6 DNA-binding response regulator compare
CA264_15770 +0.5 3.3 FAD-dependent oxidoreductase compare
CA264_06185 +0.5 2.7 hypothetical protein compare
CA264_10875 +0.5 1.4 MerP protein compare
CA264_19145 +0.5 3.3 hypothetical protein compare
CA264_08950 +0.5 3.2 short-chain dehydrogenase/reductase compare
CA264_04740 +0.5 1.0 arsenate reductase (glutaredoxin) compare
CA264_01820 +0.5 1.5 hypothetical protein compare
CA264_13430 +0.5 2.8 hypothetical protein compare
CA264_02900 +0.5 1.7 hypothetical protein compare
CA264_21170 +0.5 2.8 hypothetical protein compare
CA264_16355 +0.5 0.7 gliding motility protein GldN compare
CA264_13865 +0.5 1.0 hypothetical protein compare
CA264_08140 +0.5 1.7 oxidoreductase compare
CA264_11620 +0.5 3.7 hypothetical protein compare
CA264_03005 +0.5 2.2 hypothetical protein compare
CA264_20460 +0.5 2.0 hypothetical protein compare
CA264_07375 +0.5 2.9 NADH-dependent alcohol dehydrogenase compare
CA264_15195 +0.5 1.9 phosphate ABC transporter substrate-binding protein, PhoT family compare
CA264_19195 +0.5 3.3 hypothetical protein compare
CA264_03835 +0.5 1.2 hypothetical protein compare
CA264_17500 +0.5 1.5 molecular chaperone DnaK compare
CA264_14360 +0.4 2.5 gamma carbonic anhydrase family protein compare
CA264_03385 +0.4 1.3 hypothetical protein compare
CA264_10255 +0.4 1.2 hypothetical protein compare
CA264_05655 +0.4 3.0 FAD-binding protein compare
CA264_15750 +0.4 2.0 hypothetical protein compare
CA264_05225 +0.4 3.1 MBL fold metallo-hydrolase compare
CA264_10570 +0.4 2.5 hypothetical protein compare
CA264_10000 +0.4 1.9 DNA repair protein compare
CA264_20115 +0.4 2.8 phosphoribosylamine--glycine ligase compare
CA264_13220 +0.4 1.8 kazal domain protein compare
CA264_14160 +0.4 0.9 HupE / UreJ protein compare
CA264_05135 +0.4 2.1 amidohydrolase compare
CA264_10530 +0.4 2.0 hypothetical protein compare
CA264_14560 +0.4 1.1 VanZ family protein compare
CA264_09280 +0.4 2.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CA264_02580 +0.4 1.6 transcriptional regulator compare
CA264_01835 +0.4 1.9 GNAT family N-acetyltransferase compare
CA264_08535 +0.4 2.2 hypothetical protein compare
CA264_03485 +0.4 1.6 dodecin compare
CA264_01040 +0.4 1.7 hypothetical protein compare
CA264_21050 +0.4 1.2 hypothetical protein compare
CA264_12185 +0.4 2.0 5'/3'-nucleotidase SurE compare
CA264_17560 +0.4 3.2 hypothetical protein compare
CA264_14905 +0.4 1.7 hypothetical protein compare
CA264_00190 +0.4 3.5 RagB/SusD family nutrient uptake outer membrane protein compare
CA264_01790 +0.4 1.0 hypothetical protein compare
CA264_02620 +0.4 1.7 two-component sensor histidine kinase compare
CA264_09325 +0.4 1.7 methylglyoxal synthase compare
CA264_20270 +0.4 1.6 hypothetical protein compare
CA264_20980 +0.4 0.9 conjugal transfer protein compare
CA264_16015 +0.4 2.0 DNA-binding protein compare
CA264_15165 +0.4 0.9 flagellar motor protein MotA compare
CA264_12295 +0.4 2.0 transcriptional regulator compare
CA264_02880 +0.4 1.1 hypothetical protein compare
CA264_02080 +0.4 0.4 hypothetical protein compare
CA264_00675 +0.4 2.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA264_18950 +0.4 1.4 hypothetical protein compare
CA264_00565 +0.4 0.7 hypothetical protein compare
CA264_00195 +0.4 1.9 ribonuclease HII compare
CA264_04935 +0.4 1.2 hypothetical protein compare
CA264_05770 +0.4 1.9 cytochrome c class i compare
CA264_17685 +0.4 2.6 hypothetical protein compare
CA264_13725 +0.4 2.1 alpha/beta hydrolase compare
CA264_15760 +0.4 1.3 hypothetical protein compare
CA264_08155 +0.4 1.7 hypothetical protein compare
CA264_14420 +0.4 1.8 hypothetical protein compare
CA264_18830 +0.4 1.3 hypothetical protein compare
CA264_05160 +0.4 2.1 hypothetical protein compare
CA264_00170 +0.4 1.2 ATP:cob(I)alamin adenosyltransferase compare
CA264_21075 +0.4 2.3 ATP-binding protein compare
CA264_01435 +0.4 1.5 anti-anti-sigma factor compare
CA264_17235 +0.4 0.9 gliding motility lipoprotein GldJ compare
CA264_14965 +0.4 2.6 glycosyltransferase WbuB compare
CA264_09815 +0.4 0.7 hypothetical protein compare
CA264_17780 +0.4 1.1 hypothetical protein compare
CA264_12215 +0.4 1.3 cupin compare
CA264_19045 +0.4 1.3 acyl-CoA dehydrogenase compare
CA264_06255 +0.4 2.0 argininosuccinate synthase compare
CA264_15895 +0.4 3.0 hypothetical protein compare
CA264_03635 +0.4 1.8 DoxX family protein compare
CA264_17755 +0.4 2.4 ABC transporter compare


Specific Phenotypes

For 4 genes in this experiment

For stress Sodium nitrite in Pontibacter actiniarum KMM 6156, DSM 19842

For stress Sodium nitrite across organisms