Experiment set4IT068 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with Ffm_phage 0.001875 MOI

200 most important genes:

  gene name fitness t score description  
GFF388 -6.1 -12.3 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF3890 -4.4 -3.7 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF389 -3.7 -6.1 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF4890 -3.4 -10.6 Transport ATP-binding protein CydC compare
GFF4891 -3.0 -11.3 Transport ATP-binding protein CydD compare
GFF3901 -2.9 -3.8 Phosphomannomutase (EC 5.4.2.8) compare
GFF3712 -2.8 -4.3 Cyclic AMP receptor protein compare
GFF4646 -2.7 -10.5 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF3888 -2.7 -7.0 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF3667 -2.7 -2.6 Cytidylate kinase (EC 2.7.4.25) compare
GFF1634 -2.7 -3.5 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF1888 -2.6 -3.5 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
GFF4647 -2.6 -11.0 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF1256 -2.6 -4.1 Chromosome (plasmid) partitioning protein ParA compare
GFF4355 -2.6 -1.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF2389 -2.4 -2.3 Trk system potassium uptake protein TrkA compare
GFF4027 -2.4 -1.7 Flagellar biosynthesis protein FliS compare
GFF2946 -2.3 -4.1 RNA polymerase sigma-54 factor RpoN compare
GFF4353 -2.3 -5.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF384 -2.2 -3.9 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF4596 -2.2 -4.6 Ferric uptake regulation protein FUR compare
GFF236 -2.1 -1.3 FIG00545237: hypothetical protein compare
GFF824 -2.0 -3.9 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF2475 -1.8 -2.4 Ribonuclease III (EC 3.1.26.3) compare
GFF87 -1.8 -1.8 C4-type zinc finger protein, DksA/TraR family compare
GFF2216 -1.7 -8.2 DNA polymerase I (EC 2.7.7.7) compare
GFF380 -1.7 -8.2 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-) compare
GFF122 -1.7 -7.6 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF1883 -1.7 -8.3 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF1303 -1.7 -2.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF390 -1.7 -2.5 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
GFF55 -1.6 -7.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF3256 -1.6 -2.4 Succinyl-CoA synthetase, alpha subunit-related enzymes compare
GFF121 -1.6 -3.4 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2692 -1.6 -3.9 Peptide transport system ATP-binding protein SapF compare
GFF276 -1.6 -4.2 Potassium uptake protein TrkH compare
GFF1887 -1.6 -5.6 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF2991 -1.5 -2.3 Tyrosine recombinase XerD compare
GFF1879 -1.5 -9.3 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF2430 -1.5 -2.0 Ferredoxin, 2Fe-2S compare
GFF242 -1.5 -3.5 Magnesium and cobalt transport protein CorA compare
GFF1891 -1.5 -3.1 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF982 -1.5 -7.5 Putative cytoplasmic protein USSDB7A compare
GFF20 -1.5 -4.4 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF1881 -1.5 -7.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF1890 -1.5 -8.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF1889 -1.5 -8.8 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF1885 -1.5 -5.8 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF391 -1.5 -1.9 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF267 -1.4 -4.3 Transcriptional activator RfaH compare
GFF1880 -1.4 -8.6 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF230 -1.4 -6.8 Adenylate cyclase (EC 4.6.1.1) compare
GFF603 -1.4 -3.7 NfuA Fe-S protein maturation compare
GFF2047 -1.3 -5.2 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF1886 -1.3 -6.5 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF1750 -1.3 -2.9 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF4600 -1.3 -4.1 SeqA protein, negative modulator of initiation of replication compare
GFF115 -1.3 -3.3 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF4354 -1.3 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4060 -1.3 -1.3 putative cytoplasmic protein compare
GFF1334 -1.3 -1.1 Uncharacterized protein YohL compare
GFF4636 -1.2 -4.2 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF3502 -1.2 -1.2 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF2434 -1.2 -0.9 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF635 -1.2 -3.6 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF2689 -1.2 -2.3 Peptide transport system permease protein SapB compare
GFF1882 -1.2 -3.7 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF1716 -1.2 -4.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF381 -1.2 -2.8 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF633 -1.2 -4.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF119 -1.2 -1.0 hypothetical protein compare
GFF3862 -1.2 -2.7 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF761 -1.2 -2.0 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
GFF1920 -1.1 -1.1 hypothetical protein compare
GFF2891 -1.1 -3.5 Thioredoxin compare
GFF1088 -1.1 -0.9 FIG01045785: hypothetical protein compare
GFF4635 -1.1 -2.3 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF2623 -1.1 -1.1 Putative inner membrane protein compare
GFF4637 -1.1 -6.9 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF2881 -1.1 -5.7 WzxE protein compare
GFF249 -1.1 -1.1 L-lysine permease compare
GFF2690 -1.1 -1.5 Peptide transport system permease protein SapC compare
GFF1953 -1.0 -2.5 Phosphohistidine phosphatase SixA compare
GFF2104 -1.0 -2.2 ATP-dependent RNA helicase SrmB compare
GFF3577 -1.0 -1.5 FIG00637899: hypothetical protein compare
GFF2719 -1.0 -3.6 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF3465 -1.0 -2.3 hypothetical protein compare
GFF1681 -1.0 -2.4 Ferritin-like protein 2 compare
GFF4732 -1.0 -1.4 SPI1-associated transcriptional regulator SprB compare
GFF701 -1.0 -1.3 Hypothetical Zinc-finger containing protein compare
GFF4182 -0.9 -4.6 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF4145 -0.9 -0.9 hypothetical protein compare
GFF2160 -0.9 -1.2 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF192 -0.9 -5.4 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF4634 -0.9 -4.2 Citrate synthase (si) (EC 2.3.3.1) compare
GFF1921 -0.9 -1.4 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF4639 -0.9 -1.2 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF2773 -0.9 -3.7 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF4026 -0.9 -2.0 Flagellar biosynthesis protein FliT compare
GFF1900 -0.9 -4.3 Acetate kinase (EC 2.7.2.1) compare
GFF3787 -0.9 -2.4 Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator compare
GFF4605 -0.9 -0.9 hypothetical protein compare
GFF1985 -0.9 -1.9 tRNA-Ala-GGC compare
GFF158 -0.9 -6.3 Fructose repressor FruR, LacI family compare
GFF1149 -0.9 -1.7 unnamed protein product compare
GFF2833 -0.9 -2.1 PTS system, mannose-specific IID component (EC 2.7.1.69) compare
GFF2348 -0.9 -2.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
GFF357 -0.9 -2.0 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF2771 -0.9 -2.8 FIG002708: Protein SirB1 compare
GFF1312 -0.9 -2.1 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF2230 -0.9 -2.5 Outer membrane sugar transport protein YshA compare
GFF3166 -0.9 -1.9 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF2948 -0.8 -2.9 PTS system nitrogen-specific IIA component, PtsN compare
GFF4654 -0.8 -3.1 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF3370 -0.8 -2.0 COG1399 protein, clustered with ribosomal protein L32p compare
GFF752 -0.8 -1.4 Inner membrane protein compare
GFF1934 -0.8 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF3685 -0.8 -3.8 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF2149 -0.8 -3.4 Malate dehydrogenase (EC 1.1.1.37) compare
GFF3544 -0.8 -1.1 Electron transfer flavoprotein, beta subunit compare
GFF1285 -0.8 -2.5 FIG01049612: hypothetical protein compare
GFF2220 -0.8 -4.2 Nitrogen regulation protein NR(I) compare
GFF2784 -0.8 -1.7 GTP-binding and nucleic acid-binding protein YchF compare
GFF4288 -0.8 -3.3 AroM protein compare
GFF2397 -0.8 -4.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF3149 -0.8 -4.8 Type I secretion outer membrane protein, TolC precursor compare
GFF4586 -0.8 -1.2 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) compare
GFF1581 -0.8 -1.8 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
GFF4740 -0.8 -3.9 MxiG protein; Pathogenicity 1 island effector protein compare
GFF3183 -0.8 -1.0 FIG01046167: hypothetical protein compare
GFF2882 -0.8 -4.4 Lipopolysaccharide biosynthesis protein RffA compare
GFF2825 -0.8 -1.3 FIG00638134: hypothetical protein compare
GFF4601 -0.8 -4.1 Phosphoglucomutase (EC 5.4.2.2) compare
GFF4675 -0.8 -2.1 putative RecA/RadA recombinase compare
GFF2627 -0.8 -1.4 putative amino acid ABC transporter compare
GFF3533 -0.8 -2.1 FIG00638687: hypothetical protein compare
GFF991 -0.8 -0.6 hypothetical protein compare
GFF4585 -0.7 -3.3 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
GFF4638 -0.7 -2.7 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) compare
GFF2173 -0.7 -2.5 Chromosomal replication initiator protein DnaA compare
GFF4473 -0.7 -0.9 FIG01046818: hypothetical protein compare
GFF3583 -0.7 -1.2 Type III secretion protein SsaB compare
GFF2880 -0.7 -2.9 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF3632 -0.7 -1.7 Transcriptional regulator SlyA compare
GFF4314 -0.7 -0.7 hypothetical protein compare
GFF2477 -0.7 -3.1 Translation elongation factor LepA compare
GFF3112 -0.7 -1.7 Putative membrane protein compare
GFF3772 -0.7 -1.1 1-phosphofructokinase (EC 2.7.1.56) compare
GFF2072 -0.7 -2.1 Ethanolamine ammonia-lyase light chain (EC 4.3.1.7) compare
GFF4233 -0.7 -0.8 Fimbrial protein precursor compare
GFF1737 -0.7 -1.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
GFF3104 -0.7 -0.8 Hydrogenase maturation protease (EC 3.4.24.-) compare
GFF379 -0.7 -3.6 Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-) compare
GFF3887 -0.7 -2.9 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF3270 -0.7 -2.2 FIG01046223: hypothetical protein compare
GFF883 -0.7 -3.1 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
GFF630 -0.7 -3.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF156 -0.7 -1.0 rRNA small subunit methyltransferase H compare
GFF2469 -0.7 -1.5 Transcriptional regulator, LysR family compare
GFF2583 -0.7 -0.9 FIG00638150: hypothetical protein compare
GFF2663 -0.7 -1.0 Thiol peroxidase, Tpx-type (EC 1.11.1.15) compare
GFF4736 -0.7 -2.7 Oxygen-regulated invasion protein OrgA compare
GFF2219 -0.7 -3.6 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
GFF3137 -0.7 -2.2 Protein ygiW precursor compare
GFF4317 -0.7 -2.6 Ribonucleotide reductase transcriptional regulator NrdR compare
GFF2222 -0.6 -3.6 Glutamine synthetase type I (EC 6.3.1.2) compare
GFF400 -0.6 -0.8 Glutaredoxin 3 (Grx3) compare
GFF618 -0.6 -1.5 33 kDa chaperonin (Heat shock protein 33) (HSP33) compare
GFF4720 -0.6 -1.9 [NiFe] hydrogenase nickel incorporation protein HypA compare
GFF522 -0.6 -3.5 Low-affinity inorganic phosphate transporter compare
GFF1363 -0.6 -1.6 hypothetical protein compare
GFF2063 -0.6 -0.9 Inner membrane protein YfeZ compare
GFF72 -0.6 -1.1 Minor fimbrial subunit StfE compare
GFF2664 -0.6 -1.6 FIG01200701: possible membrane protein compare
GFF30 -0.6 -1.8 YaeQ protein compare
GFF2433 -0.6 -1.6 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF508 -0.6 -3.0 Transcriptional regulator, GntR family compare
GFF2218 -0.6 -2.6 Protein of unknown function DUF414 compare
GFF1014 -0.6 -0.7 PTS system, mannose-specific IIC component (EC 2.7.1.69) compare
GFF4584 -0.6 -2.9 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family compare
GFF4798 -0.6 -1.6 Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF3767 -0.6 -1.7 Putative inner membrane protein compare
GFF4652 -0.6 -1.6 Tol biopolymer transport system, TolR protein compare
GFF2314 -0.6 -2.4 ATP-dependent protease HslV (EC 3.4.25.-) compare
GFF3585 -0.6 -1.9 Secretion system apparatus SsaD compare
GFF2656 -0.6 -2.3 Fumarate and nitrate reduction regulatory protein compare
GFF3963 -0.6 -2.0 Additional substrate-specific component CbiN of cobalt ECF transporter compare
GFF1193 -0.6 -2.3 Endonuclease (EC 3.1.-.-) compare
GFF1901 -0.6 -2.3 Phosphate acetyltransferase (EC 2.3.1.8) compare
GFF2992 -0.6 -3.2 Flavodoxin 2 compare
GFF2270 -0.6 -1.3 hypothetical protein compare
GFF2867 -0.6 -1.0 hypothetical protein compare
GFF3163 -0.6 -2.1 hypothetical protein compare
GFF3417 -0.6 -3.1 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
GFF443 -0.6 -0.8 FIG01045230: hypothetical protein compare
GFF876 -0.6 -4.2 UPF0131 protein YtfP compare
GFF3377 -0.6 -2.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
GFF3139 -0.6 -3.2 Sensory histidine kinase QseC compare
GFF3510 -0.6 -2.7 L-cystine uptake protein TcyP compare
GFF1735 -0.6 -2.2 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage Ffm_phage across organisms