| | gene | name | fitness | t score | description | |
|---|
| b3792 | wzxE | -6.2 | -4.3 | O-antigen translocase (NCBI) | compare |
| b3035 | tolC | -5.3 | -10.1 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b4172 | hfq | -4.5 | -3.1 | RNA-binding protein Hfq (NCBI) | compare |
| b0053 | surA | -4.3 | -5.1 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3052 | rfaE | -4.1 | -6.2 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b0222 | lpcA | -4.1 | -4.8 | phosphoheptose isomerase (NCBI) | compare |
| b3842 | rfaH | -4.0 | -6.7 | transcriptional activator RfaH (NCBI) | compare |
| b0630 | lipB | -4.0 | -2.7 | protein of lipoate biosynthesis (VIMSS) | compare |
| b3619 | rfaD | -4.0 | -4.7 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3621 | rfaC | -3.9 | -6.9 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3884 | yihW | -3.7 | -8.0 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b2686 | emrB | -3.5 | -12.4 | multidrug efflux system protein (NCBI) | compare |
| b3620 | rfaF | -3.5 | -5.3 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b1236 | galU | -3.4 | -8.2 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b2685 | emrA | -3.4 | -8.7 | multidrug efflux system (NCBI) | compare |
| b0683 | fur | -3.3 | -3.9 | ferric uptake regulator (NCBI) | compare |
| b0200 | gmhB | -3.2 | -2.2 | hypothetical protein (NCBI) | compare |
| b3725 | pstB | -3.1 | -4.3 | phosphate transporter subunit (NCBI) | compare |
| b2285 | nuoE | -3.0 | -3.6 | NADH dehydrogenase subunit E (NCBI) | compare |
| b3630 | rfaP | -3.0 | -15.7 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2279 | nuoK | -2.8 | -3.8 | NADH dehydrogenase subunit K (NCBI) | compare |
| b3631 | rfaG | -2.8 | -19.5 | glucosyltransferase I (NCBI) | compare |
| b3183 | obgE | -2.8 | -2.8 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b4375 | prfC | -2.8 | -10.1 | peptide chain release factor 3 (NCBI) | compare |
| b3728 | pstS | -2.7 | -8.2 | phosphate transporter subunit (NCBI) | compare |
| b2016 | yeeZ | -2.6 | -8.3 | predicted epimerase, with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b2281 | nuoI | -2.5 | -4.8 | NADH dehydrogenase subunit I (NCBI) | compare |
| b3871 | bipA | -2.4 | -12.2 | GTP-binding protein (NCBI) | compare |
| b2820 | recB | -2.4 | -4.3 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b3839 | tatC | -2.4 | -11.6 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3386 | rpe | -2.4 | -2.3 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b0738 | tolR | -2.4 | -5.1 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0688 | pgm | -2.4 | -5.4 | phosphoglucomutase (NCBI) | compare |
| b3398 | yrfF | -2.3 | -3.9 | predicted inner membrane protein (NCBI) | compare |
| b4443 | gcvB | -2.3 | -1.6 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b3844 | fre | -2.2 | -6.3 | NAD(P)H-flavin reductase (NCBI) | compare |
| b3226 | yhcK | -2.2 | -7.6 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b1850 | eda | -2.2 | -3.2 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b2276 | nuoN | -2.1 | -7.1 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b2277 | nuoM | -2.1 | -8.3 | NADH dehydrogenase subunit M (NCBI) | compare |
| b2284 | nuoF | -2.1 | -6.3 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b3162 | deaD | -2.1 | -7.8 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b0739 | tolA | -2.1 | -5.9 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b0439 | lon | -1.9 | -6.7 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b2282 | nuoH | -1.9 | -4.5 | NADH dehydrogenase subunit H (NCBI) | compare |
| b0145 | dksA | -1.9 | -4.2 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b2288 | nuoA | -1.9 | -3.0 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0049 | apaH | -1.9 | -6.1 | diadenosinetetraphosphatase (NCBI) | compare |
| b2287 | nuoB | -1.9 | -4.9 | NADH dehydrogenase subunit B (NCBI) | compare |
| b0737 | tolQ | -1.9 | -4.4 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b3026 | qseC | -1.9 | -6.6 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0014 | dnaK | -1.8 | -2.7 | molecular chaperone DnaK (NCBI) | compare |
| b2283 | nuoG | -1.8 | -8.0 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b2894 | xerD | -1.8 | -2.4 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b2278 | nuoL | -1.8 | -9.3 | NADH dehydrogenase subunit L (NCBI) | compare |
| b2330 | yfcB | -1.7 | -3.3 | putative adenine-specific methylase (VIMSS) | compare |
| b3426 | glpD | -1.7 | -7.5 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b0740 | tolB | -1.7 | -6.2 | translocation protein TolB precursor (NCBI) | compare |
| b3609 | secB | -1.7 | -3.1 | export protein SecB (NCBI) | compare |
| b3741 | gidA | -1.6 | -8.5 | glucose-inhibited division protein A (NCBI) | compare |
| b2576 | srmB | -1.6 | -3.8 | ATP-dependent RNA helicase (NCBI) | compare |
| b3194 | yrbE | -1.6 | -9.2 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2280 | nuoJ | -1.6 | -5.0 | NADH dehydrogenase subunit J (NCBI) | compare |
| b1070 | flgN | -1.6 | -1.9 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b2512 | yfgL | -1.5 | -5.9 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3193 | yrbD | -1.5 | -7.6 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b2906 | visC | -1.5 | -5.7 | hypothetical protein (NCBI) | compare |
| b3727 | pstC | -1.5 | -4.9 | phosphate transporter subunit (NCBI) | compare |
| b2286 | nuoC | -1.5 | -5.6 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b0890 | ftsK | -1.5 | -7.6 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b0471 | ybaB | -1.5 | -3.7 | hypothetical protein (NCBI) | compare |
| b3636 | rpmG | -1.4 | -1.7 | 50S ribosomal protein L33 (NCBI) | compare |
| b1286 | rnb | -1.4 | -3.8 | exoribonuclease II (NCBI) | compare |
| b3192 | yrbC | -1.4 | -8.5 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3764 | yifE | -1.4 | -5.6 | hypothetical protein (NCBI) | compare |
| b3414 | gntY | -1.4 | -6.3 | predicted gluconate transport associated protein (NCBI) | compare |
| b2567 | rnc | -1.4 | -2.0 | ribonuclease III (NCBI) | compare |
| b2518 | ndk | -1.4 | -3.2 | nucleoside diphosphate kinase (NCBI) | compare |
| b3632 | rfaQ | -1.3 | -11.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3290 | trkA | -1.3 | -4.3 | potassium transporter peripheral membrane component (NCBI) | compare |
| b4480 | hdfR | -1.3 | -5.7 | transcriptional regulator HdfR (NCBI) | compare |
| b2822 | recC | -1.3 | -5.7 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b2830 | nudH | -1.3 | -1.7 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3706 | trmE | -1.3 | -5.4 | tRNA modification GTPase (NCBI) | compare |
| b2935 | tktA | -1.3 | -3.1 | transketolase 1, thiamin-binding (NCBI) | compare |
| b3838 | tatB | -1.3 | -5.7 | sec-independent translocase (NCBI) | compare |
| b0726 | sucA | -1.3 | -3.6 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b3195 | yrbF | -1.3 | -8.1 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2808 | gcvA | -1.2 | -5.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2528 | iscA | -1.2 | -2.0 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b0191 | yaeJ | -1.2 | -3.8 | hypothetical protein (NCBI) | compare |
| b3390 | aroK | -1.2 | -2.4 | shikimate kinase I (NCBI) | compare |
| b3199 | yrbK | -1.2 | -2.0 | hypothetical protein (NCBI) | compare |
| b3237 | argR | -1.2 | -3.9 | arginine repressor (NCBI) | compare |
| b4042 | dgkA | -1.2 | -3.1 | diacylglycerol kinase (NCBI) | compare |
| b0949 | uup | -1.1 | -6.3 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b4155 | yjeA | -1.1 | -1.7 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b3463 | ftsE | -1.1 | -4.2 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3164 | pnp | -1.1 | -3.1 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b4239 | treC | -1.1 | -4.1 | trehalose-6-P hydrolase (NCBI) | compare |
| b4458 | oxyS | -1.1 | -1.4 | global regulatory RNA (NCBI) | compare |
| b1124 | potC | -1.1 | -4.8 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b3811 | xerC | -1.1 | -2.9 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b0082 | mraW | -1.1 | -3.0 | S-adenosyl-methyltransferase (NCBI) | compare |
| b4394 | yjjX | -1.1 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b1125 | potB | -1.1 | -2.4 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b0431 | cyoB | -1.1 | -6.4 | cytochrome o ubiquinol oxidase subunit I (NCBI) | compare |
| b3863 | polA | -1.1 | -1.6 | DNA polymerase I (NCBI) | compare |
| b3261 | fis | -1.0 | -2.9 | DNA-binding protein Fis (NCBI) | compare |
| b1984 | asnW | -1.0 | -1.1 | tRNA-Asn (NCBI) | compare |
| b2346 | vacJ | -1.0 | -5.6 | predicted lipoprotein (NCBI) | compare |
| b4146 | yjeK | -1.0 | -3.3 | predicted lysine aminomutase (NCBI) | compare |
| b2168 | fruK | -1.0 | -2.0 | 1-phosphofructokinase (NCBI) | compare |
| b0428 | cyoE | -1.0 | -4.4 | protoheme IX farnesyltransferase (NCBI) | compare |
| b3726 | pstA | -1.0 | -4.4 | phosphate transporter subunit (NCBI) | compare |
| b0623 | cspE | -1.0 | -2.4 | cold shock protein E (NCBI) | compare |
| b0430 | cyoC | -1.0 | -2.8 | cytochrome o ubiquinol oxidase subunit III (NCBI) | compare |
| b0429 | cyoD | -1.0 | -3.6 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b0118 | acnB | -1.0 | -3.1 | aconitate hydratase (NCBI) | compare |
| b3962 | udhA | -1.0 | -6.1 | putative oxidoreductase (VIMSS) | compare |
| b1658 | purR | -1.0 | -4.9 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b2553 | glnB | -1.0 | -3.6 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b0765 | modC | -1.0 | -3.8 | molybdate transporter subunit (NCBI) | compare |
| b3229 | sspA | -0.9 | -3.2 | stringent starvation protein A (NCBI) | compare |
| b0724 | sdhB | -0.9 | -3.6 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b0564 | appY | -0.9 | -1.3 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b2188 | yejM | -0.9 | -4.8 | predicted hydrolase, inner membrane (NCBI) | compare |
| b4557 | yidD | -0.9 | -3.4 | hypothetical protein (NCBI) | compare |
| b4178 | yjeB | -0.9 | -3.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4234 | yjgA | -0.9 | -3.6 | hypothetical protein (NCBI) | compare |
| b0767 | ybhE | -0.9 | -3.3 | 6-phosphogluconolactonase (NCBI) | compare |
| b1524 | yneH | -0.9 | -1.4 | predicted glutaminase (NCBI) | compare |
| b2297 | pta | -0.9 | -1.6 | phosphate acetyltransferase (NCBI) | compare |
| b1841 | yobA | -0.9 | -1.3 | hypothetical protein (NCBI) | compare |
| b1138 | ymfE | -0.9 | -1.4 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b0263 | afuB | -0.9 | -2.3 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b4685 | yrbN | -0.9 | -1.5 | expressed protein (RefSeq) | compare |
| b2617 | smpA | -0.8 | -2.9 | small membrane protein A (VIMSS) | compare |
| b1095 | fabF | -0.8 | -5.0 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1248 | b1248 | -0.8 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1863 | ruvC | -0.8 | -1.9 | Holliday junction resolvase (NCBI) | compare |
| b2263 | yfbB | -0.8 | -2.3 | predicted peptidase (NCBI) | compare |
| b1192 | ldcA | -0.8 | -3.4 | L,D-carboxypeptidase A (NCBI) | compare |
| b1684 | sufA | -0.8 | -1.8 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b2953 | yggU | -0.8 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2531 | iscR | -0.8 | -1.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1134 | ymfB | -0.8 | -1.9 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b4699 | fnrS | -0.8 | -1.0 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b2908 | pepP | -0.8 | -3.7 | proline aminopeptidase P II (NCBI) | compare |
| b0957 | ompA | -0.8 | -3.2 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b1604 | ydgH | -0.8 | -3.6 | hypothetical protein (NCBI) | compare |
| b0736 | ybgC | -0.8 | -2.4 | predicted acyl-CoA thioesterase (NCBI) | compare |
| b2699 | recA | -0.8 | -1.7 | recombinase A (NCBI) | compare |
| b0462 | acrB | -0.8 | -6.5 | multidrug efflux system protein (NCBI) | compare |
| b1291 | sapD | -0.8 | -1.3 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3405 | ompR | -0.8 | -2.9 | osmolarity response regulator (NCBI) | compare |
| b1429 | tehA | -0.8 | -1.8 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b0051 | ksgA | -0.8 | -3.1 | dimethyladenosine transferase (NCBI) | compare |
| b4246 | pyrL | -0.8 | -1.9 | pyrBI operon leader peptide (NCBI) | compare |
| b2424 | cysU | -0.8 | -2.1 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b1013 | ycdC | -0.8 | -2.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4704 | arrS | -0.7 | -1.4 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b2569 | lepA | -0.7 | -3.1 | GTP-binding protein LepA (NCBI) | compare |
| b0463 | acrA | -0.7 | -4.9 | multidrug efflux system (NCBI) | compare |
| b2689 | yqaA | -0.7 | -3.1 | conserved inner membrane protein (NCBI) | compare |
| b3963 | fabR | -0.7 | -4.5 | DNA-binding transcriptional repressor (RefSeq) | compare |
| b0741 | pal | -0.7 | -2.8 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1623 | add | -0.7 | -3.2 | adenosine deaminase (NCBI) | compare |
| b3131 | agaR | -0.7 | -2.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1284 | yciT | -0.7 | -3.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3625 | rfaY | -0.7 | -5.1 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0149 | mrcB | -0.7 | -5.2 | penicillin-binding protein 1b (NCBI) | compare |
| b1989 | asnV | -0.7 | -1.9 | tRNA-Asn (NCBI) | compare |
| b0723 | sdhA | -0.7 | -4.3 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b2498 | upp | -0.7 | -2.0 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2646 | ypjF | -0.7 | -2.0 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b0406 | tgt | -0.7 | -4.0 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b0721 | sdhC | -0.7 | -2.0 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b0677 | nagA | -0.7 | -3.4 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b3613 | yibP | -0.7 | -3.0 | putative membrane protein (VIMSS) | compare |
| b0008 | talB | -0.7 | -4.2 | transaldolase B (NCBI) | compare |
| b1558 | cspF | -0.7 | -2.0 | Qin prophage; cold shock protein (NCBI) | compare |
| b3644 | yicC | -0.7 | -3.5 | hypothetical protein (NCBI) | compare |
| b0432 | cyoA | -0.7 | -4.7 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b3616 | tdh | -0.7 | -3.3 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b1292 | sapC | -0.7 | -1.9 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0178 | hlpA | -0.7 | -1.5 | periplasmic chaperone (NCBI) | compare |
| b2937 | speB | -0.7 | -4.0 | agmatinase (NCBI) | compare |
| b2003 | yeeT | -0.7 | -2.3 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b2051 | wcaH | -0.6 | -1.0 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b2340 | sixA | -0.6 | -2.5 | phosphohistidine phosphatase (NCBI) | compare |
| b1443 | ydcV | -0.6 | -2.1 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b1130 | phoP | -0.6 | -3.9 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b0763 | modA | -0.6 | -3.0 | molybdate transporter subunit (NCBI) | compare |
| b2325 | yfcL | -0.6 | -2.4 | hypothetical protein (NCBI) | compare |
| b1818 | manY | -0.6 | -1.7 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b3349 | slyD | -0.6 | -3.2 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b4609 | ryfD | -0.6 | -2.3 | Novel sRNA, function unknown (RefSeq) | compare |
| b3094 | exuR | -0.6 | -3.1 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | compare |
| b3163 | nlpI | -0.6 | -2.6 | hypothetical protein (NCBI) | compare |