Experiment set4IT067 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with Ffm_phage 0.01875 MOI

200 most important genes:

  gene name fitness t score description  
GFF388 -6.2 -14.9 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF390 -4.4 -3.0 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
GFF3890 -4.1 -6.8 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF4890 -3.9 -12.0 Transport ATP-binding protein CydC compare
GFF3888 -3.5 -6.6 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF4355 -3.5 -1.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF389 -3.5 -6.4 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF3667 -3.2 -1.9 Cytidylate kinase (EC 2.7.4.25) compare
GFF2434 -3.1 -1.6 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF4891 -2.9 -14.2 Transport ATP-binding protein CydD compare
GFF1634 -2.9 -3.9 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF3712 -2.8 -4.9 Cyclic AMP receptor protein compare
GFF4647 -2.7 -12.8 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF4646 -2.7 -13.2 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF1750 -2.6 -4.5 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF2690 -2.5 -2.7 Peptide transport system permease protein SapC compare
GFF2475 -2.4 -2.4 Ribonuclease III (EC 3.1.26.3) compare
GFF2946 -2.3 -4.6 RNA polymerase sigma-54 factor RpoN compare
GFF1256 -2.3 -4.4 Chromosome (plasmid) partitioning protein ParA compare
GFF2692 -2.2 -6.1 Peptide transport system ATP-binding protein SapF compare
GFF121 -2.1 -3.5 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF384 -2.0 -1.9 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF55 -2.0 -8.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF2216 -2.0 -8.8 DNA polymerase I (EC 2.7.7.7) compare
GFF267 -1.9 -9.8 Transcriptional activator RfaH compare
GFF122 -1.9 -9.0 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF1883 -1.9 -6.2 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF635 -1.9 -4.6 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF4635 -1.9 -3.4 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF380 -1.8 -7.3 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-) compare
GFF381 -1.8 -4.7 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF276 -1.8 -5.5 Potassium uptake protein TrkH compare
GFF2389 -1.7 -2.2 Trk system potassium uptake protein TrkA compare
GFF4596 -1.7 -4.7 Ferric uptake regulation protein FUR compare
GFF1887 -1.7 -8.1 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF3862 -1.7 -3.9 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF230 -1.6 -8.3 Adenylate cyclase (EC 4.6.1.1) compare
GFF1880 -1.6 -7.6 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF1885 -1.6 -8.5 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF1879 -1.6 -10.9 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF387 -1.6 -3.9 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF3166 -1.6 -3.5 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF824 -1.6 -4.2 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF2689 -1.6 -4.9 Peptide transport system permease protein SapB compare
GFF1890 -1.6 -9.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF236 -1.6 -1.3 FIG00545237: hypothetical protein compare
GFF2991 -1.5 -2.9 Tyrosine recombinase XerD compare
GFF1881 -1.5 -8.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF1901 -1.5 -5.2 Phosphate acetyltransferase (EC 2.3.1.8) compare
GFF20 -1.5 -5.4 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF2047 -1.5 -6.5 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF4653 -1.4 -2.9 TolA protein compare
GFF1921 -1.4 -2.5 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF3901 -1.4 -2.2 Phosphomannomutase (EC 5.4.2.8) compare
GFF1889 -1.4 -9.3 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF4600 -1.4 -3.6 SeqA protein, negative modulator of initiation of replication compare
GFF1886 -1.4 -7.1 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF192 -1.4 -6.0 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF1716 -1.3 -3.8 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF883 -1.3 -9.4 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
GFF603 -1.3 -4.0 NfuA Fe-S protein maturation compare
GFF4353 -1.3 -2.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF2948 -1.3 -2.8 PTS system nitrogen-specific IIA component, PtsN compare
GFF2881 -1.3 -7.0 WzxE protein compare
GFF1900 -1.3 -5.8 Acetate kinase (EC 2.7.2.1) compare
GFF392 -1.2 -1.8 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF4652 -1.2 -3.6 Tol biopolymer transport system, TolR protein compare
GFF4637 -1.2 -8.1 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF1934 -1.2 -4.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF3377 -1.2 -4.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
GFF4288 -1.2 -6.5 AroM protein compare
GFF1312 -1.2 -1.9 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF1882 -1.2 -4.3 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF2430 -1.2 -2.0 Ferredoxin, 2Fe-2S compare
GFF2431 -1.2 -2.5 Chaperone protein HscA compare
GFF391 -1.2 -1.0 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF4655 -1.2 -2.8 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF876 -1.2 -7.9 UPF0131 protein YtfP compare
GFF115 -1.1 -3.9 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF1499 -1.1 -2.9 Ribosome-binding factor A compare
GFF2173 -1.1 -4.2 Chromosomal replication initiator protein DnaA compare
GFF2409 -1.1 -4.3 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF633 -1.1 -4.6 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF4354 -1.1 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF1891 -1.1 -2.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF4026 -1.1 -2.3 Flagellar biosynthesis protein FliT compare
GFF2348 -1.1 -3.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
GFF158 -1.0 -4.7 Fructose repressor FruR, LacI family compare
GFF2220 -1.0 -6.6 Nitrogen regulation protein NR(I) compare
GFF1303 -1.0 -1.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF4636 -1.0 -4.4 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF2397 -1.0 -5.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF816 -1.0 -1.5 Phage tail assembly protein I compare
GFF3887 -1.0 -3.7 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF4766 -1.0 -1.3 Invasion protein invH precursor compare
GFF2222 -1.0 -5.1 Glutamine synthetase type I (EC 6.3.1.2) compare
GFF2773 -0.9 -3.7 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF630 -0.9 -4.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF4601 -0.9 -4.9 Phosphoglucomutase (EC 5.4.2.2) compare
GFF2148 -0.9 -2.1 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF587 -0.9 -3.1 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF2808 -0.9 -6.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF1884 -0.9 -1.3 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF2149 -0.9 -4.3 Malate dehydrogenase (EC 1.1.1.37) compare
GFF2324 -0.9 -5.4 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF4406 -0.9 -2.6 Putative activity regulator of membrane protease YbbK compare
GFF87 -0.9 -1.3 C4-type zinc finger protein, DksA/TraR family compare
GFF982 -0.9 -6.4 Putative cytoplasmic protein USSDB7A compare
GFF4639 -0.9 -1.5 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF4892 -0.9 -2.8 Thioredoxin reductase (EC 1.8.1.9) compare
GFF2663 -0.9 -1.4 Thiol peroxidase, Tpx-type (EC 1.11.1.15) compare
GFF3230 -0.9 -1.1 Transposase compare
GFF2784 -0.9 -2.5 GTP-binding and nucleic acid-binding protein YchF compare
GFF4654 -0.9 -3.8 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF2992 -0.9 -4.6 Flavodoxin 2 compare
GFF1808 -0.9 -2.2 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF2688 -0.9 -2.4 Peptide transport periplasmic protein SapA compare
GFF4638 -0.9 -3.0 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) compare
GFF1953 -0.9 -2.4 Phosphohistidine phosphatase SixA compare
GFF3264 -0.9 -1.3 hypothetical protein compare
GFF4798 -0.9 -3.1 Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF2880 -0.9 -4.0 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF906 -0.8 -1.0 FIG01047835: hypothetical protein compare
GFF2882 -0.8 -5.2 Lipopolysaccharide biosynthesis protein RffA compare
GFF4605 -0.8 -0.9 hypothetical protein compare
GFF2221 -0.8 -3.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
GFF287 -0.8 -1.4 hypothetical protein compare
GFF1600 -0.8 -1.5 HAD-superfamily hydrolase, subfamily IA compare
GFF4182 -0.8 -3.6 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF827 -0.8 -3.5 HflK protein compare
GFF3828 -0.8 -1.4 Uncharacterized fimbrial chaperone YehC precursor compare
GFF2477 -0.8 -3.7 Translation elongation factor LepA compare
GFF3518 -0.8 -0.9 putative outer membrane protein compare
GFF618 -0.8 -2.7 33 kDa chaperonin (Heat shock protein 33) (HSP33) compare
GFF629 -0.8 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
GFF701 -0.8 -1.2 Hypothetical Zinc-finger containing protein compare
GFF2154 -0.8 -1.8 L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) compare
GFF3548 -0.8 -3.0 3-dehydroquinate dehydratase I (EC 4.2.1.10) compare
GFF2433 -0.8 -2.5 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF4374 -0.8 -1.0 LSU ribosomal protein L36p compare
GFF522 -0.8 -5.0 Low-affinity inorganic phosphate transporter compare
GFF3417 -0.8 -3.1 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
GFF379 -0.8 -3.8 Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-) compare
GFF3706 -0.7 -1.7 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
GFF3252 -0.7 -2.4 Inner membrane protein YccF compare
GFF1156 -0.7 -1.2 IncF plasmid conjugative transfer pilus assembly protein TraL compare
GFF2639 -0.7 -1.6 Heat shock protein hslJ compare
GFF1411 -0.7 -3.7 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF3877 -0.7 -1.9 GDP-mannose mannosyl hydrolase (EC 3.6.1.-) compare
GFF2528 -0.7 -2.5 Hexuronate utilization operon transcriptional repressor ExuR compare
GFF2219 -0.7 -4.2 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
GFF1792 -0.7 -1.6 Spermidine export protein MdtJ compare
GFF3479 -0.7 -3.1 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
GFF3041 -0.7 -1.0 hypothetical protein compare
GFF2104 -0.7 -1.6 ATP-dependent RNA helicase SrmB compare
GFF3632 -0.7 -1.7 Transcriptional regulator SlyA compare
GFF4243 -0.7 -0.7 Probable secreted protein compare
GFF2954 -0.7 -4.3 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF1343 -0.7 -0.9 Attachment invasion locus protein precursor compare
GFF1736 -0.7 -0.9 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
GFF1828 -0.7 -3.8 Thiamin biosynthesis lipoprotein ApbE compare
GFF1239 -0.7 -1.3 Gifsy-2 prophage lysozyme( EC:3.2.1.17 ) compare
GFF739 -0.7 -2.7 Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) compare
GFF383 -0.7 -0.9 Lipopolysaccharide 1,6-galactosyltransferase (EC 2.4.1.-) compare
GFF1971 -0.7 -1.6 hypothetical protein compare
GFF1056 -0.7 -3.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF2753 -0.7 -3.9 Hnr protein compare
GFF3826 -0.7 -1.6 FIG00510335: hypothetical protein compare
GFF1522 -0.6 -3.3 Galactitol utilization operon repressor compare
GFF4701 -0.6 -3.2 Glucitol operon repressor compare
GFF119 -0.6 -0.7 hypothetical protein compare
GFF4585 -0.6 -3.5 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
GFF2276 -0.6 -0.7 Manganese superoxide dismutase (EC 1.15.1.1) compare
GFF23 -0.6 -2.4 Methionine ABC transporter substrate-binding protein compare
GFF4732 -0.6 -1.2 SPI1-associated transcriptional regulator SprB compare
GFF2891 -0.6 -2.0 Thioredoxin compare
GFF713 -0.6 -0.8 FIG01047037: hypothetical protein compare
GFF1055 -0.6 -1.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF1935 -0.6 -1.5 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
GFF2138 -0.6 -3.6 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
GFF880 -0.6 -4.6 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
GFF3685 -0.6 -3.6 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF357 -0.6 -1.5 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF4350 -0.6 -0.7 hypothetical protein compare
GFF213 -0.6 -3.5 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) compare
GFF4450 -0.6 -2.4 Fimbrial periplasmic chaperone SfmC compare
GFF1088 -0.6 -0.7 FIG01045785: hypothetical protein compare
GFF652 -0.6 -3.5 UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF979 -0.6 -3.8 Uxu operon transcriptional regulator compare
GFF2061 -0.6 -3.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
GFF616 -0.6 -1.3 hypothetical protein compare
GFF1773 -0.6 -1.1 Chaperone protein TorD compare
GFF3137 -0.6 -3.2 Protein ygiW precursor compare
GFF828 -0.6 -2.2 HflC protein compare
GFF2863 -0.6 -0.8 FIG074102: hypothetical protein compare
GFF2469 -0.6 -0.9 Transcriptional regulator, LysR family compare
GFF3149 -0.6 -3.5 Type I secretion outer membrane protein, TolC precursor compare
GFF110 -0.6 -2.3 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF214 -0.6 -3.7 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) compare
GFF1408 -0.6 -3.2 Chorismate--pyruvate lyase (EC 4.1.3.40) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage Ffm_phage across organisms