Experiment set4IT065 for Pseudomonas simiae WCS417

Compare to:

LB with L-Lysine 60 mM

200 most important genes:

  gene name fitness t score description  
PS417_01915 -4.9 -1.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27800 -4.8 -10.1 exodeoxyribonuclease III compare
PS417_16845 -4.5 -4.3 monovalent cation/H+ antiporter subunit E compare
PS417_27865 -3.9 -6.2 LysR family transcriptional regulator compare
PS417_02555 -3.8 -17.2 exoribonuclease R compare
PS417_23915 -3.8 -7.5 pantoate--beta-alanine ligase compare
PS417_23910 -3.8 -9.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_16840 -3.3 -9.2 monovalent cation/H+ antiporter subunit D compare
PS417_01605 -3.3 -3.1 phosphoglycerate mutase compare
PS417_20985 -3.3 -4.8 porin compare
PS417_16830 -3.3 -14.8 monovalent cation/H+ antiporter subunit A compare
PS417_27870 -3.1 -6.4 ATP-dependent DNA helicase RecG compare
PS417_24705 -3.0 -6.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_21630 -3.0 -4.8 magnesium transporter compare
PS417_20130 -2.9 -12.8 dehydrogenase compare
PS417_06530 -2.9 -5.4 membrane protein compare
PS417_24155 -2.9 -4.0 ATP-binding protein compare
PS417_02485 -2.8 -6.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24835 -2.8 -7.8 hypothetical protein compare
PS417_00405 -2.6 -8.5 DNA polymerase I compare
PS417_25645 -2.5 -8.3 peptidase M23 compare
PS417_01920 -2.5 -2.7 ATP-dependent protease subunit HslV compare
PS417_16850 -2.5 -3.1 cation:proton antiporter compare
PS417_26990 -2.4 -2.4 RNA pyrophosphohydrolase compare
PS417_04170 -2.4 -8.8 stringent starvation protein A compare
PS417_24710 -2.3 -12.0 lipoprotein compare
PS417_02475 -2.3 -5.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_00900 -2.2 -3.6 4-aminobutyrate aminotransferase compare
PS417_22445 -2.1 -4.8 ATP-dependent DNA helicase RuvB compare
PS417_23770 -1.9 -3.2 exodeoxyribonuclease V subunit alpha compare
PS417_22990 -1.9 -2.5 iron dicitrate transport regulator FecR compare
PS417_23995 -1.9 -1.5 preprotein translocase subunit SecG compare
PS417_26800 -1.8 -9.9 cell division protein FtsX compare
PS417_04650 -1.7 -0.9 D-alanine--D-alanine ligase compare
PS417_16855 -1.7 -2.2 cation:proton antiporter compare
PS417_22410 -1.7 -4.9 hypothetical protein compare
PS417_25390 -1.7 -6.3 MFS transporter compare
PS417_07550 -1.6 -6.0 lytic transglycosylase compare
PS417_17945 -1.6 -1.7 hypothetical protein compare
PS417_10025 -1.6 -2.1 bacteriophage lambda NinG family protein compare
PS417_27245 -1.6 -4.3 aminotransferase DegT compare
PS417_01600 -1.5 -3.5 peptidase M23 compare
PS417_24680 -1.5 -9.0 murein transglycosylase compare
PS417_03310 -1.4 -6.8 carbonate dehydratase compare
PS417_08220 -1.4 -1.5 epimerase compare
PS417_05695 -1.4 -4.0 transcriptional regulator compare
PS417_20610 -1.4 -1.6 hypothetical protein compare
PS417_20080 -1.4 -3.5 peptidase P60 compare
PS417_13010 -1.4 -2.6 alpha/beta hydrolase compare
PS417_15325 -1.3 -1.6 type VI secretion protein compare
PS417_05560 -1.3 -2.7 ABC transporter compare
PS417_24895 -1.3 -1.2 hypothetical protein compare
PS417_24615 -1.3 -1.6 hypothetical protein compare
PS417_04475 -1.3 -2.4 hypothetical protein compare
PS417_25910 -1.3 -5.8 amine oxidase compare
PS417_00285 -1.2 -5.2 carbonate dehydratase compare
PS417_14590 -1.2 -1.2 LysR family transcriptional regulator compare
PS417_00180 -1.2 -2.8 tryptophan synthase subunit alpha compare
PS417_24345 -1.2 -3.1 ubiquinol oxidase subunit II compare
PS417_04380 -1.2 -1.5 ABC transporter permease compare
PS417_25405 -1.1 -8.1 catalase conserved
PS417_04275 -1.1 -8.4 hypothetical protein compare
PS417_22780 -1.1 -2.8 XRE family transcriptional regulator compare
PS417_22160 -1.1 -7.6 3-beta hydroxysteroid dehydrogenase compare
PS417_13735 -1.1 -1.9 hypothetical protein compare
PS417_23025 -1.1 -5.3 murein transglycosylase compare
PS417_07875 -1.1 -1.0 hypothetical protein compare
PS417_16720 -1.1 -1.3 membrane protein compare
PS417_05590 -1.1 -4.3 iron ABC transporter ATP-binding protein compare
PS417_21210 -1.1 -2.3 amidotransferase compare
PS417_01560 -1.0 -1.9 imidazoleglycerol-phosphate dehydratase compare
PS417_09035 -1.0 -2.1 hypothetical protein compare
PS417_24350 -1.0 -3.0 cytochrome D ubiquinol oxidase subunit I compare
PS417_27005 -1.0 -1.1 membrane protein compare
PS417_10185 -1.0 -2.3 hypothetical protein compare
PS417_23820 -1.0 -3.8 hypothetical protein compare
PS417_14260 -1.0 -2.3 phosphate ABC transporter permease compare
PS417_28040 -1.0 -4.1 histidine kinase compare
PS417_24755 -1.0 -3.4 phosphoesterase compare
PS417_28185 -1.0 -2.5 homocysteine methyltransferase compare
PS417_00650 -0.9 -1.0 LysR family transcriptional regulator compare
PS417_27265 -0.9 -4.5 iron ABC transporter substrate-binding protein compare
PS417_20070 -0.9 -3.4 hydrolase Nlp/P60 compare
PS417_25270 -0.9 -3.2 NrdR family transcriptional regulator compare
PS417_16000 -0.9 -1.8 chemotaxis protein CheY compare
PS417_18310 -0.9 -1.5 hypothetical protein compare
PS417_04595 -0.9 -2.7 cell division protein MraZ compare
PS417_10455 -0.9 -1.5 membrane protein compare
PS417_03560 -0.9 -2.0 GTP-binding protein compare
PS417_09300 -0.9 -2.2 peptidylprolyl isomerase compare
PS417_04420 -0.9 -5.0 histidinol dehydrogenase compare
PS417_13055 -0.9 -1.7 aminotransferase compare
PS417_25680 -0.9 -4.9 short-chain dehydrogenase compare
PS417_10405 -0.9 -1.2 filamentous hemagglutinin compare
PS417_21830 -0.9 -3.4 TetR family transcriptional regulator compare
PS417_14200 -0.9 -2.1 hypothetical protein compare
PS417_01285 -0.9 -0.9 haloacid dehalogenase compare
PS417_02255 -0.9 -2.5 lipopolysaccharide kinase compare
PS417_24745 -0.9 -2.0 gamma-glutamyl phosphate reductase compare
PS417_15780 -0.9 -1.6 membrane protein compare
PS417_00045 -0.9 -2.1 glycerol acyltransferase compare
PS417_24715 -0.9 -3.9 lytic transglycosylase compare
PS417_26750 -0.9 -3.3 homoserine acetyltransferase compare
PS417_20880 -0.9 -1.8 GntR family transcriptional regulator compare
PS417_16715 -0.9 -1.3 DoxX family protein compare
PS417_27835 -0.9 -3.7 endoribonuclease compare
PS417_26295 -0.9 -3.3 gamma-butyrobetaine dioxygenase compare
PS417_07170 -0.9 -3.1 hypothetical protein compare
PS417_28035 -0.9 -3.8 transcriptional regulator PhoB compare
PS417_14045 -0.9 -3.1 alkyl hydroperoxide reductase compare
PS417_04875 -0.9 -1.3 molybdenum cofactor biosynthesis protein MoaE compare
PS417_18690 -0.9 -2.6 aromatic amino acid aminotransferase compare
PS417_02160 -0.8 -1.1 hypothetical protein compare
PS417_17035 -0.8 -1.3 Cro/Cl family transcriptional regulator compare
PS417_05165 -0.8 -2.1 cytosol aminopeptidase compare
PS417_04385 -0.8 -4.6 organic solvent ABC transporter substrate-binding protein compare
PS417_16490 -0.8 -1.7 cell division protein FtsK compare
PS417_02950 -0.8 -3.5 tRNA-dihydrouridine synthase B compare
PS417_19805 -0.8 -2.6 flagellar M-ring protein FliF compare
PS417_25905 -0.8 -1.7 AsnC family transcriptional regulator compare
PS417_26775 -0.8 -5.6 thiazole synthase compare
PS417_05815 -0.8 -3.3 recombinase RecA compare
PS417_22505 -0.8 -3.7 mechanosensitive ion channel protein MscS compare
PS417_20650 -0.8 -4.6 hypothetical protein compare
PS417_23950 -0.8 -2.5 polynucleotide phosphorylase/polyadenylase compare
PS417_27285 -0.8 -5.4 Xaa-Pro aminopeptidase compare
PS417_07120 -0.8 -3.3 RNA polymerase sigma-H factor compare
PS417_01510 -0.8 -1.7 hypothetical protein compare
PS417_08125 -0.8 -0.9 prephenate dehydratase compare
PS417_24605 -0.8 -1.8 thiamine-phosphate pyrophosphorylase compare
PS417_27510 -0.8 -3.2 disulfide bond formation protein B compare
PS417_15065 -0.8 -1.1 GntR family transcriptional regulator compare
PS417_24935 -0.8 -1.0 hypothetical protein compare
PS417_12740 -0.8 -2.3 secretion protein HlyD compare
PS417_22570 -0.8 -0.8 H-NS histone compare
PS417_08200 -0.8 -2.4 hypothetical protein compare
PS417_21000 -0.8 -1.0 CrfX protein compare
PS417_08205 -0.8 -2.2 acetyltransferase compare
PS417_02805 -0.8 -1.2 urease subunit gamma compare
PS417_27260 -0.8 -4.2 iron ABC transporter permease compare
PS417_13165 -0.8 -1.8 peroxidase compare
PS417_12215 -0.8 -3.4 lytic transglycosylase compare
PS417_22085 -0.8 -2.4 aldehyde dehydrogenase compare
PS417_06370 -0.8 -1.4 cold-shock protein compare
PS417_14065 -0.7 -3.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_26645 -0.7 -1.8 chemotaxis protein compare
PS417_08185 -0.7 -3.1 glycosyl transferase compare
PS417_12735 -0.7 -1.3 peroxidase compare
PS417_05365 -0.7 -1.2 FAD-binding protein compare
PS417_02270 -0.7 -3.4 carbamoyltransferase compare
PS417_16045 -0.7 -1.6 acyl-CoA dehydrogenase compare
PS417_02480 -0.7 -3.0 DNA mismatch repair protein compare
PS417_23455 -0.7 -2.2 LrgA compare
PS417_22795 -0.7 -1.7 exclusion suppressor FxsA compare
PS417_09580 -0.7 -2.5 tyrosyl-trna synthetase compare
PS417_13455 -0.7 -2.3 alkaline proteinase inhibitor compare
PS417_26000 -0.7 -3.8 8-amino-7-oxononanoate synthase compare
PS417_16355 -0.7 -4.4 hypothetical protein compare
PS417_22620 -0.7 -2.8 pyruvate kinase compare
PS417_08990 -0.7 -2.2 ABC transporter substrate-binding protein compare
PS417_20950 -0.7 -1.8 hypothetical protein compare
PS417_15975 -0.7 -1.1 glutamate carboxypeptidase compare
PS417_26175 -0.7 -0.9 sarcosine oxidase subunit gamma compare
PS417_26530 -0.7 -0.9 hypothetical protein compare
PS417_23775 -0.7 -0.7 exodeoxyribonuclease V subunit beta compare
PS417_20855 -0.7 -1.3 hypothetical protein compare
PS417_08195 -0.7 -4.4 hypothetical protein compare
PS417_23755 -0.7 -1.4 membrane protein compare
PS417_18360 -0.7 -2.0 hypothetical protein compare
PS417_15035 -0.7 -1.2 alkylhydroperoxidase compare
PS417_00510 -0.7 -0.9 membrane protein compare
PS417_23160 -0.7 -1.9 50S rRNA methyltransferase compare
PS417_10010 -0.7 -2.1 Replication protein P compare
PS417_00895 -0.7 -2.7 succinate-semialdehyde dehydrogenase compare
PS417_16080 -0.7 -1.9 AraC family transcriptional regulator compare
PS417_23135 -0.7 -1.1 GTP-binding protein compare
PS417_10220 -0.7 -2.2 hypothetical protein compare
PS417_24365 -0.7 -2.6 FAD-binding molybdopterin dehydrogenase compare
PS417_05230 -0.7 -2.9 membrane protein compare
PS417_15380 -0.7 -2.1 hypothetical protein compare
PS417_20800 -0.7 -3.3 recombination protein RecR compare
PS417_19605 -0.7 -0.8 hypothetical protein compare
PS417_11455 -0.7 -1.9 hypothetical protein compare
PS417_04365 -0.6 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01550 -0.6 -3.9 cell envelope biogenesis protein AsmA compare
PS417_23490 -0.6 -1.1 dihydrofolate reductase compare
PS417_22640 -0.6 -2.0 cytochrome C biogenesis protein CcmE compare
PS417_01095 -0.6 -0.8 amino acid ABC transporter ATP-binding protein compare
PS417_08225 -0.6 -2.8 acetolactate synthase compare
PS417_26730 -0.6 -1.0 pyrroline-5-carboxylate reductase compare
PS417_00915 -0.6 -1.9 aminotransferase compare
PS417_12840 -0.6 -1.2 TetR family transcriptional regulator compare
PS417_11230 -0.6 -1.8 hydroxyacid dehydrogenase compare
PS417_14680 -0.6 -2.2 LysR family transcriptional regulator compare
PS417_08190 -0.6 -4.3 membrane protein compare
PS417_06150 -0.6 -1.6 SAM-dependent methlyltransferase compare
PS417_12220 -0.6 -2.0 hydroxyacylglutathione hydrolase compare
PS417_11945 -0.6 -1.4 hypothetical protein compare
PS417_07615 -0.6 -3.1 TetR family transcriptional regulator compare
PS417_09465 -0.6 -2.9 FMN reductase compare


Specific Phenotypes

For 10 genes in this experiment

For stress L-Lysine in Pseudomonas simiae WCS417

For stress L-Lysine across organisms